Wall clock time and date at job start Tue Mar 31 2020 22:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00137 * 2 1 4 4 H 1.48498 * 109.46949 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46820 * 299.99538 * 3 2 1 6 6 H 1.48497 * 109.46961 * 59.99601 * 3 2 1 7 7 C 1.38810 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99957 * 164.51542 * 7 2 1 9 9 N 1.36939 * 120.00205 * 344.51418 * 7 2 1 10 10 C 1.47000 * 121.37519 * 335.97906 * 9 7 2 11 11 C 1.50327 * 109.16339 * 222.96589 * 10 9 7 12 12 C 1.29452 * 123.65264 * 349.27440 * 11 10 9 13 13 C 1.50695 * 117.69233 * 180.57855 * 12 11 10 14 14 C 1.53000 * 109.47225 * 95.00476 * 13 12 11 15 15 N 1.46494 * 109.47191 * 179.97438 * 14 13 12 16 16 C 1.34784 * 120.00109 * 179.97438 * 15 14 13 17 17 O 1.21574 * 119.99459 * 0.02562 * 16 15 14 18 18 C 1.47650 * 119.99976 * 179.97438 * 16 15 14 19 19 C 1.40202 * 119.97535 * 359.73090 * 18 16 15 20 20 C 1.36322 * 120.67123 * 179.68984 * 19 18 16 21 21 C 1.39380 * 120.23185 * 0.60089 * 20 19 18 22 22 N 1.37397 * 133.24636 * 179.70374 * 21 20 19 23 23 H 0.97000 * 125.00823 * 359.97438 * 22 21 20 24 24 C 1.36859 * 109.98030 * 179.97438 * 22 21 20 25 25 C 1.34193 * 109.95802 * 0.02562 * 24 22 21 26 26 C 1.40870 * 119.63872 * 359.68020 * 21 20 19 27 27 C 1.39156 * 119.97240 * 179.97438 * 18 16 15 28 28 C 1.49965 * 124.61263 * 0.34455 * 12 11 10 29 29 C 1.47340 * 121.37537 * 155.99196 * 9 7 2 30 30 H 0.97002 * 119.99820 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.52979 * 103.05631 * 10 9 7 32 32 H 1.08999 * 109.52447 * 342.86621 * 10 9 7 33 33 H 1.08007 * 118.17039 * 168.99539 * 11 10 9 34 34 H 1.09004 * 109.46594 * 215.00062 * 13 12 11 35 35 H 1.08997 * 109.47427 * 334.99700 * 13 12 11 36 36 H 1.08999 * 109.46897 * 299.99806 * 14 13 12 37 37 H 1.09000 * 109.46858 * 59.99555 * 14 13 12 38 38 H 0.97000 * 120.00167 * 0.02562 * 15 14 13 39 39 H 1.08002 * 119.67040 * 359.97438 * 19 18 16 40 40 H 1.08000 * 119.88830 * 180.28067 * 20 19 18 41 41 H 1.08001 * 125.02036 * 180.02562 * 24 22 21 42 42 H 1.08001 * 126.53945 * 180.02562 * 25 24 22 43 43 H 1.07997 * 120.30170 * 0.02562 * 27 18 16 44 44 H 1.08998 * 109.43384 * 221.05427 * 28 12 11 45 45 H 1.09000 * 109.13218 * 101.66209 * 28 12 11 46 46 H 1.08996 * 109.78029 * 237.78998 * 29 9 7 47 47 H 1.09002 * 109.77908 * 358.60056 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0608 -1.2192 -0.2492 9 7 1.3628 -2.3664 0.3177 10 6 0.1443 -2.3650 1.1401 11 6 0.2246 -3.4821 2.1428 12 6 1.1231 -4.4133 2.1090 13 6 1.0701 -5.4767 3.1754 14 6 0.2971 -6.6880 2.6499 15 7 0.2461 -7.7220 3.6864 16 6 -0.3890 -8.8863 3.4462 17 8 -0.9191 -9.0785 2.3691 18 6 -0.4399 -9.9286 4.4907 19 6 0.1774 -9.7090 5.7302 20 6 0.1338 -10.6590 6.7068 21 6 -0.5173 -11.8702 6.4791 22 7 -0.7172 -12.9907 7.2487 23 1 -0.3972 -13.1064 8.1570 24 6 -1.4345 -13.9197 6.5447 25 6 -1.7191 -13.4475 5.3212 26 6 -1.1364 -12.1053 5.2358 27 6 -1.0962 -11.1303 4.2422 28 6 2.2101 -4.5113 1.0805 29 6 1.8589 -3.6722 -0.1510 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7266 -2.5110 0.5012 32 1 0.0585 -1.4122 1.6624 33 1 -0.5056 -3.5066 2.9383 34 1 2.0841 -5.7788 3.4379 35 1 0.5688 -5.0810 4.0587 36 1 -0.7168 -6.3859 2.3874 37 1 0.7985 -7.0837 1.7667 38 1 0.6687 -7.5684 4.5459 39 1 0.6888 -8.7758 5.9148 40 1 0.6098 -10.4747 7.6586 41 1 -1.7281 -14.8894 6.9186 42 1 -2.2729 -13.9586 4.5475 43 1 -1.5694 -11.3055 3.2873 44 1 2.3357 -5.5525 0.7836 45 1 3.1430 -4.1470 1.5108 46 1 1.0846 -4.1745 -0.7308 47 1 2.7475 -3.5300 -0.7661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161063280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:10 Heat of formation + Delta-G solvation = 36.327611 kcal Electronic energy + Delta-G solvation = -27323.397295 eV Core-core repulsion = 23471.204807 eV Total energy + Delta-G solvation = -3852.192488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.23196 -40.78704 -39.46551 -37.56602 -36.74198 -35.12932 -33.20687 -32.95923 -31.55321 -31.08705 -29.95191 -29.55664 -27.14718 -25.12035 -24.38850 -23.62532 -23.33724 -22.45637 -21.80237 -21.22154 -19.45465 -19.14056 -18.36573 -17.66935 -17.19370 -17.00625 -16.73517 -16.50982 -15.83260 -15.55295 -15.40142 -15.35732 -15.10649 -14.97640 -14.87185 -14.78727 -14.28797 -14.04752 -13.86363 -13.68487 -13.43084 -13.32433 -13.20334 -12.82659 -12.79825 -12.59994 -12.54846 -12.33312 -12.12052 -11.90737 -11.87153 -11.66256 -11.26932 -11.00145 -10.80744 -10.68889 -10.15996 -9.47584 -9.25169 -8.74659 -8.74165 -7.87477 -5.29764 -0.07170 0.26966 1.42842 1.46976 1.47704 1.59021 1.79394 1.91344 2.19154 2.24568 2.51523 2.95362 3.29275 3.66167 3.69626 3.78302 3.94265 3.98271 4.11735 4.11935 4.21218 4.29234 4.31266 4.43480 4.56008 4.60296 4.69022 4.70412 4.74566 4.88127 4.92479 4.95833 4.99139 5.07544 5.10245 5.18899 5.24733 5.33868 5.39137 5.41997 5.43575 5.51325 5.61658 5.63086 5.72923 5.89402 6.08295 6.29752 6.34241 6.56486 6.69376 7.13680 7.23014 7.83729 8.38907 9.21353 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.038698 B = 0.001618 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.380963 B =17305.136216 C =17505.515251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.057 4.057 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.257 4.257 8 H 0.072 0.928 9 N -0.615 5.615 10 C 0.206 3.794 11 C -0.174 4.174 12 C -0.120 4.120 13 C -0.078 4.078 14 C 0.132 3.868 15 N -0.710 5.710 16 C 0.556 3.444 17 O -0.591 6.591 18 C -0.180 4.180 19 C -0.070 4.070 20 C -0.127 4.127 21 C 0.105 3.895 22 N -0.580 5.580 23 H 0.434 0.566 24 C 0.068 3.932 25 C -0.229 4.229 26 C -0.148 4.148 27 C -0.023 4.023 28 C -0.087 4.087 29 C 0.135 3.865 30 H 0.249 0.751 31 H 0.001 0.999 32 H 0.056 0.944 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.416 0.584 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.214 0.786 42 H 0.156 0.844 43 H 0.117 0.883 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.016 0.984 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.282 -29.499 21.761 36.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.252 4.252 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.387 4.387 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.081 3.919 11 C -0.194 4.194 12 C -0.121 4.121 13 C -0.115 4.115 14 C 0.008 3.992 15 N -0.362 5.362 16 C 0.346 3.654 17 O -0.473 6.473 18 C -0.184 4.184 19 C -0.090 4.090 20 C -0.147 4.147 21 C -0.006 4.006 22 N -0.184 5.184 23 H 0.275 0.725 24 C -0.058 4.058 25 C -0.253 4.253 26 C -0.153 4.153 27 C -0.043 4.043 28 C -0.126 4.126 29 C 0.009 3.991 30 H 0.058 0.942 31 H 0.019 0.981 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.254 0.746 39 H 0.174 0.826 40 H 0.177 0.823 41 H 0.231 0.769 42 H 0.173 0.827 43 H 0.135 0.865 44 H 0.104 0.896 45 H 0.088 0.912 46 H 0.034 0.966 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.882 -29.533 21.127 36.323 hybrid contribution 0.041 1.326 -0.071 1.329 sum 0.923 -28.207 21.056 35.211 Atomic orbital electron populations 1.70211 1.06700 1.25706 1.56309 1.25808 0.96180 1.01543 1.01658 0.85132 0.78563 0.79592 0.76726 1.18907 1.22002 1.21661 1.19593 0.92596 0.85587 1.40913 0.91036 1.44425 1.29410 1.02064 1.57965 1.19353 0.87258 0.95280 0.89994 1.22825 0.99354 0.97240 0.99950 1.20576 0.97147 0.96273 0.98120 1.20806 1.01854 0.92191 0.96678 1.21201 1.00053 0.87182 0.90741 1.45765 1.56334 1.15337 1.18784 1.18612 0.77436 0.82482 0.86891 1.90756 1.48249 1.80754 1.27582 1.19551 1.07570 0.95373 0.95927 1.20879 0.97376 1.00026 0.90702 1.20028 1.02497 0.90707 1.01488 1.18677 0.99960 0.90392 0.91525 1.41880 1.47972 1.12407 1.16154 0.72520 1.22478 0.95661 0.95924 0.91694 1.22064 1.09220 0.94320 0.99697 1.19462 1.04612 0.96760 0.94452 1.20675 0.94639 0.91080 0.97918 1.20716 0.96932 0.99979 0.94950 1.21155 0.97050 0.86070 0.94801 0.94168 0.98124 0.92621 0.86884 0.88633 0.89615 0.93299 0.92272 0.74567 0.82573 0.82253 0.76922 0.82679 0.86520 0.89647 0.91169 0.96594 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.51 11.08 21.65 0.24 -57.27 16 2 C -0.06 -3.30 5.01 84.86 0.43 -2.87 16 3 Si 0.97 45.86 29.58 68.60 2.03 47.89 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.26 -14.58 9.71 84.03 0.82 -13.76 16 8 H 0.07 3.91 7.88 -2.91 -0.02 3.89 16 9 N -0.61 -32.33 3.01 -703.40 -2.12 -34.45 16 10 C 0.21 10.57 5.23 85.42 0.45 11.02 16 11 C -0.17 -6.85 9.47 27.11 0.26 -6.60 16 12 C -0.12 -3.99 5.11 -15.14 -0.08 -4.06 16 13 C -0.08 -1.78 5.32 29.85 0.16 -1.62 16 14 C 0.13 3.35 5.66 86.38 0.49 3.84 16 15 N -0.71 -14.99 5.51 -466.17 -2.57 -17.56 16 16 C 0.56 15.09 7.76 86.73 0.67 15.77 16 17 O -0.59 -21.68 16.33 -3.95 -0.06 -21.74 16 18 C -0.18 -3.96 5.87 -20.09 -0.12 -4.08 16 19 C -0.07 -0.99 9.46 22.30 0.21 -0.78 16 20 C -0.13 -1.46 10.00 22.10 0.22 -1.24 16 21 C 0.10 1.47 7.27 39.19 0.28 1.76 16 22 N -0.58 -4.21 6.05 -187.48 -1.13 -5.34 16 23 H 0.43 0.06 8.96 -92.71 -0.83 -0.77 16 24 C 0.07 0.49 11.81 82.99 0.98 1.47 16 25 C -0.23 -3.19 11.09 23.52 0.26 -2.93 16 26 C -0.15 -2.84 6.36 -20.21 -0.13 -2.97 16 27 C -0.02 -0.55 9.64 22.74 0.22 -0.33 16 28 C -0.09 -2.95 5.94 29.65 0.18 -2.77 16 29 C 0.13 5.80 6.58 86.25 0.57 6.37 16 30 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 31 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.06 3.18 6.41 -2.39 -0.02 3.16 16 33 H 0.11 3.88 7.73 -2.91 -0.02 3.86 16 34 H 0.10 1.76 8.11 -2.38 -0.02 1.74 16 35 H 0.09 1.73 7.78 -2.39 -0.02 1.71 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.06 1.65 8.07 -2.39 -0.02 1.63 16 38 H 0.42 5.52 6.48 -92.71 -0.60 4.92 16 39 H 0.16 1.19 6.36 -2.91 -0.02 1.17 16 40 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 41 H 0.21 -0.36 8.06 -2.91 -0.02 -0.38 16 42 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 43 H 0.12 3.05 7.64 -2.91 -0.02 3.03 16 44 H 0.09 2.40 8.07 -2.39 -0.02 2.38 16 45 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 2.48 7.96 -2.39 -0.02 2.46 16 Total: -1.00 -81.53 386.69 1.82 -79.71 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -0.43 Total: 12.57 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 5.86 Total: -3.80 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -5.58 Total: -114.63 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.06 Total: -21.74 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -81.53 1.82 -79.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161063280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.038 kcal (2) G-P(sol) polarization free energy of solvation -81.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds