Wall clock time and date at job start Tue Mar 31 2020 22:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86811 * 119.99783 * 2 1 4 4 H 1.48498 * 109.47087 * 270.00060 * 3 2 1 5 5 H 1.48498 * 109.46812 * 29.99940 * 3 2 1 6 6 H 1.48500 * 109.46643 * 149.99755 * 3 2 1 7 7 C 1.38815 * 120.00570 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00306 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99424 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99603 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47361 * 174.37145 * 10 9 7 12 12 C 1.53001 * 115.54826 * 294.95092 * 11 10 9 13 13 C 1.52997 * 109.47313 * 279.32442 * 12 11 10 14 14 N 1.46499 * 109.47785 * 175.45523 * 13 12 11 15 15 C 1.34774 * 120.00207 * 179.97438 * 14 13 12 16 16 O 1.21604 * 120.00234 * 0.02562 * 15 14 13 17 17 C 1.47432 * 119.99578 * 180.02562 * 15 14 13 18 18 C 1.38736 * 120.33724 * 359.72844 * 17 15 14 19 19 C 1.38868 * 120.73107 * 179.73473 * 18 17 15 20 20 C 1.36351 * 121.05431 * 0.54959 * 19 18 17 21 21 C 1.40432 * 120.08185 * 359.71474 * 20 19 18 22 22 C 1.40814 * 121.25373 * 180.02562 * 21 20 19 23 23 C 1.36632 * 118.14952 * 180.02562 * 22 21 20 24 24 C 1.39231 * 119.91104 * 359.97438 * 23 22 21 25 25 N 1.31233 * 121.69751 * 0.03220 * 24 23 22 26 26 C 1.33347 * 121.35378 * 359.94367 * 25 24 23 27 27 C 1.52994 * 117.51732 * 80.64644 * 11 10 9 28 28 C 1.52993 * 117.50136 * 149.27911 * 11 10 9 29 29 H 0.96996 * 120.00315 * 0.02562 * 1 2 3 30 30 H 0.96996 * 119.99849 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.47605 * 54.36688 * 10 9 7 32 32 H 1.09000 * 109.47155 * 294.36788 * 10 9 7 33 33 H 1.09000 * 109.47553 * 159.31749 * 12 11 10 34 34 H 1.09005 * 109.47293 * 39.32075 * 12 11 10 35 35 H 1.09004 * 109.46928 * 295.45660 * 13 12 11 36 36 H 1.09003 * 109.47395 * 55.45189 * 13 12 11 37 37 H 0.96999 * 119.99255 * 359.97438 * 14 13 12 38 38 H 1.08005 * 119.63658 * 359.97438 * 18 17 15 39 39 H 1.08001 * 119.47568 * 180.28410 * 19 18 17 40 40 H 1.08004 * 119.95528 * 179.74556 * 20 19 18 41 41 H 1.07993 * 120.92225 * 359.97438 * 22 21 20 42 42 H 1.08000 * 120.04310 * 179.97438 * 23 22 21 43 43 H 1.07998 * 119.15187 * 179.97438 * 24 23 22 44 44 H 1.09010 * 117.49880 * 214.97558 * 27 11 10 45 45 H 1.08995 * 117.50339 * 359.97438 * 27 11 10 46 46 H 1.08994 * 117.49984 * 359.97438 * 28 11 10 47 47 H 1.09007 * 117.50026 * 145.00270 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0700 -4.8163 0.1386 12 6 0.3073 -4.8768 1.4636 13 6 1.1945 -5.5154 2.5341 14 7 0.5062 -5.4750 3.8267 15 6 1.1012 -5.9850 4.9232 16 8 2.2095 -6.4783 4.8397 17 6 0.4082 -5.9448 6.2239 18 6 -0.8541 -5.3787 6.3281 19 6 -1.5165 -5.3414 7.5480 20 6 -0.9423 -5.8484 8.6760 21 6 0.3364 -6.4258 8.6164 22 6 0.9523 -6.9573 9.7657 23 6 2.1979 -7.5035 9.6354 24 6 2.8206 -7.5231 8.3902 25 7 2.2422 -7.0262 7.3221 26 6 1.0274 -6.4795 7.3818 27 6 0.3335 -5.2737 -1.1220 28 6 1.4406 -6.1444 -0.5244 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3880 -0.0016 31 1 2.7578 -3.6724 0.8342 32 1 2.6078 -3.7589 -0.9373 33 1 -0.5956 -5.4740 1.3362 34 1 0.0348 -3.8675 1.7723 35 1 1.4007 -6.5512 2.2645 36 1 2.1325 -4.9647 2.6046 37 1 -0.3777 -5.0812 3.8933 38 1 -1.3284 -4.9658 5.4500 39 1 -2.5005 -4.8999 7.6051 40 1 -1.4719 -5.8064 9.6164 41 1 0.4544 -6.9330 10.7237 42 1 2.6988 -7.9195 10.4971 43 1 3.8054 -7.9575 8.3013 44 1 -0.6946 -5.6177 -1.0074 45 1 0.5524 -4.7482 -2.0514 46 1 2.3882 -6.1919 -1.0609 47 1 1.1409 -7.0613 -0.0168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166006165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:12 Heat of formation + Delta-G solvation = 60.313650 kcal Electronic energy + Delta-G solvation = -27954.890276 eV Core-core repulsion = 24103.737901 eV Total energy + Delta-G solvation = -3851.152375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.20970 -39.34561 -38.17065 -37.18553 -34.71370 -33.87965 -33.69535 -31.10516 -30.76623 -30.70850 -29.34069 -25.96715 -24.97422 -24.09807 -23.70316 -22.77092 -22.57138 -21.63985 -20.47991 -18.73966 -18.45496 -17.80457 -17.10822 -17.02013 -16.19562 -15.72818 -15.51440 -15.06350 -14.98076 -14.61451 -14.44025 -14.25901 -14.15244 -13.91701 -13.31556 -13.28531 -13.23558 -13.01760 -12.63374 -12.43420 -12.20090 -12.02871 -11.86043 -11.64507 -11.40080 -11.08531 -10.93203 -10.82117 -10.76261 -10.54275 -10.13591 -10.01240 -9.87454 -9.62170 -9.32319 -9.24522 -9.12245 -8.91097 -8.81426 -8.54414 -6.86941 -5.73528 -3.00962 -0.13456 0.51091 1.48256 2.48784 3.17272 3.21785 3.45814 3.51150 3.52750 3.94037 4.01217 4.10403 4.24095 4.39495 4.48946 4.57646 4.64239 4.68500 4.78593 4.96119 5.06808 5.09918 5.16118 5.20786 5.33089 5.38716 5.54734 5.57812 5.59910 5.64282 5.71515 5.74048 5.83627 5.85043 5.96057 5.99648 6.14682 6.21676 6.26463 6.26736 6.46307 6.48021 6.50278 6.54095 6.64068 6.81413 6.89140 7.59761 7.73861 7.79693 8.38848 8.45877 9.57499 10.16108 10.52030 11.49424 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011474 B = 0.002442 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.617354 B =11465.049365 C =12487.324024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.187 3.813 11 C -0.118 4.118 12 C -0.091 4.091 13 C 0.128 3.872 14 N -0.727 5.727 15 C 0.550 3.450 16 O -0.500 6.500 17 C -0.105 4.105 18 C -0.062 4.062 19 C -0.124 4.124 20 C -0.074 4.074 21 C -0.112 4.112 22 C -0.059 4.059 23 C -0.176 4.176 24 C 0.131 3.869 25 N -0.437 5.437 26 C 0.161 3.839 27 C -0.165 4.165 28 C -0.177 4.177 29 H 0.254 0.746 30 H 0.385 0.615 31 H 0.027 0.973 32 H 0.017 0.983 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.396 0.604 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.160 0.840 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.351 -17.639 19.043 26.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.371 5.371 10 C 0.060 3.940 11 C -0.119 4.119 12 C -0.129 4.129 13 C 0.005 3.995 14 N -0.380 5.380 15 C 0.336 3.664 16 O -0.374 6.374 17 C -0.109 4.109 18 C -0.083 4.083 19 C -0.142 4.142 20 C -0.093 4.093 21 C -0.114 4.114 22 C -0.085 4.085 23 C -0.196 4.196 24 C -0.042 4.042 25 N -0.143 5.143 26 C 0.038 3.962 27 C -0.202 4.202 28 C -0.215 4.215 29 H 0.064 0.936 30 H 0.218 0.782 31 H 0.045 0.955 32 H 0.034 0.966 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.231 0.769 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.177 0.823 44 H 0.106 0.894 45 H 0.114 0.886 46 H 0.110 0.890 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.017 -17.850 18.080 25.585 hybrid contribution -0.772 1.257 0.874 1.714 sum -3.789 -16.593 18.954 25.474 Atomic orbital electron populations 1.69656 1.05046 1.25500 1.58134 1.24707 0.95512 0.97567 1.03248 0.86211 0.78714 0.83949 0.77488 1.21790 1.21829 1.20780 1.19244 0.91036 0.84191 1.42202 0.91279 1.42289 1.05887 0.99651 1.89302 1.20187 0.91934 0.84179 0.97726 1.21554 1.01699 0.96004 0.92681 1.21256 0.96842 1.02245 0.92529 1.21342 0.96392 1.00968 0.80812 1.45983 1.21418 1.61967 1.08667 1.17886 0.85970 0.79344 0.83243 1.90852 1.18352 1.43041 1.85174 1.19979 0.95184 1.02352 0.93344 1.21518 0.93011 0.95101 0.98665 1.20868 1.00790 1.00344 0.92194 1.21164 0.93314 0.95629 0.99155 1.18844 0.96325 1.01898 0.94331 1.21459 0.94863 0.94632 0.97590 1.21971 0.96376 1.01622 0.99600 1.23206 0.99621 0.93629 0.87727 1.68341 1.08206 1.07287 1.30479 1.18627 0.90769 0.95617 0.91183 1.22961 0.96444 1.03135 0.97666 1.22972 1.00014 0.94091 1.04416 0.93631 0.78171 0.95502 0.96562 0.91996 0.89474 0.91727 0.90910 0.76896 0.84535 0.84624 0.84839 0.84270 0.84441 0.82270 0.89355 0.88628 0.88953 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.39 5.30 -59.91 -0.32 -18.70 16 10 C 0.19 3.86 6.10 -4.04 -0.02 3.84 16 11 C -0.12 -1.93 1.52 -154.51 -0.23 -2.17 16 12 C -0.09 -1.35 5.24 -26.73 -0.14 -1.49 16 13 C 0.13 1.90 5.51 -4.04 -0.02 1.88 16 14 N -0.73 -9.92 5.51 -61.38 -0.34 -10.26 16 15 C 0.55 8.67 7.76 -12.52 -0.10 8.58 16 16 O -0.50 -9.73 15.19 5.27 0.08 -9.65 16 17 C -0.10 -1.39 5.90 -104.62 -0.62 -2.01 16 18 C -0.06 -0.60 9.52 -39.16 -0.37 -0.98 16 19 C -0.12 -0.95 9.93 -40.03 -0.40 -1.35 16 20 C -0.07 -0.57 9.75 -39.44 -0.38 -0.95 16 21 C -0.11 -1.13 5.74 -106.82 -0.61 -1.75 16 22 C -0.06 -0.46 9.90 -39.19 -0.39 -0.84 16 23 C -0.18 -1.33 10.03 -39.79 -0.40 -1.73 16 24 C 0.13 1.36 11.15 -17.44 -0.19 1.17 16 25 N -0.44 -6.40 8.44 -10.76 -0.09 -6.49 16 26 C 0.16 2.19 6.61 -84.58 -0.56 1.63 16 27 C -0.16 -2.47 9.90 -26.73 -0.26 -2.73 16 28 C -0.18 -2.44 9.57 -26.73 -0.26 -2.70 16 29 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.38 10.13 7.46 -40.82 -0.30 9.83 16 31 H 0.03 0.58 7.69 -51.92 -0.40 0.18 16 32 H 0.02 0.35 8.09 -51.93 -0.42 -0.07 16 33 H 0.06 0.79 7.94 -51.93 -0.41 0.38 16 34 H 0.09 1.49 7.64 -51.93 -0.40 1.10 16 35 H 0.06 0.95 7.80 -51.93 -0.41 0.54 16 36 H 0.07 1.26 7.69 -51.93 -0.40 0.87 16 37 H 0.40 4.31 6.50 -40.82 -0.27 4.04 16 38 H 0.14 1.01 6.37 -52.48 -0.33 0.68 16 39 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 41 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 43 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 44 H 0.09 1.19 8.08 -51.92 -0.42 0.77 16 45 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 46 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.09 1.10 7.98 -51.93 -0.41 0.69 16 LS Contribution 393.91 15.07 5.94 5.94 Total: -1.00 -36.20 393.91 -10.92 -47.11 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -6.68 Total: 10.76 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -5.21 Total: -8.93 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -0.02 Total: -62.89 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.20 -10.92 -47.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166006165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.428 kcal (2) G-P(sol) polarization free energy of solvation -36.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds