Wall clock time and date at job start Tue Mar 31 2020 22:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86811 * 119.99783 * 2 1 4 4 H 1.48498 * 109.47087 * 270.00060 * 3 2 1 5 5 H 1.48498 * 109.46812 * 29.99940 * 3 2 1 6 6 H 1.48500 * 109.46643 * 149.99755 * 3 2 1 7 7 C 1.38815 * 120.00570 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00306 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99424 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99603 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47361 * 174.37145 * 10 9 7 12 12 C 1.53001 * 115.54826 * 294.95092 * 11 10 9 13 13 C 1.52997 * 109.47313 * 279.32442 * 12 11 10 14 14 N 1.46499 * 109.47785 * 175.45523 * 13 12 11 15 15 C 1.34774 * 120.00207 * 179.97438 * 14 13 12 16 16 O 1.21604 * 120.00234 * 0.02562 * 15 14 13 17 17 C 1.47432 * 119.99578 * 180.02562 * 15 14 13 18 18 C 1.38736 * 120.33724 * 359.72844 * 17 15 14 19 19 C 1.38868 * 120.73107 * 179.73473 * 18 17 15 20 20 C 1.36351 * 121.05431 * 0.54959 * 19 18 17 21 21 C 1.40432 * 120.08185 * 359.71474 * 20 19 18 22 22 C 1.40814 * 121.25373 * 180.02562 * 21 20 19 23 23 C 1.36632 * 118.14952 * 180.02562 * 22 21 20 24 24 C 1.39231 * 119.91104 * 359.97438 * 23 22 21 25 25 N 1.31233 * 121.69751 * 0.03220 * 24 23 22 26 26 C 1.33347 * 121.35378 * 359.94367 * 25 24 23 27 27 C 1.52994 * 117.51732 * 80.64644 * 11 10 9 28 28 C 1.52993 * 117.50136 * 149.27911 * 11 10 9 29 29 H 0.96996 * 120.00315 * 0.02562 * 1 2 3 30 30 H 0.96996 * 119.99849 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.47605 * 54.36688 * 10 9 7 32 32 H 1.09000 * 109.47155 * 294.36788 * 10 9 7 33 33 H 1.09000 * 109.47553 * 159.31749 * 12 11 10 34 34 H 1.09005 * 109.47293 * 39.32075 * 12 11 10 35 35 H 1.09004 * 109.46928 * 295.45660 * 13 12 11 36 36 H 1.09003 * 109.47395 * 55.45189 * 13 12 11 37 37 H 0.96999 * 119.99255 * 359.97438 * 14 13 12 38 38 H 1.08005 * 119.63658 * 359.97438 * 18 17 15 39 39 H 1.08001 * 119.47568 * 180.28410 * 19 18 17 40 40 H 1.08004 * 119.95528 * 179.74556 * 20 19 18 41 41 H 1.07993 * 120.92225 * 359.97438 * 22 21 20 42 42 H 1.08000 * 120.04310 * 179.97438 * 23 22 21 43 43 H 1.07998 * 119.15187 * 179.97438 * 24 23 22 44 44 H 1.09010 * 117.49880 * 214.97558 * 27 11 10 45 45 H 1.08995 * 117.50339 * 359.97438 * 27 11 10 46 46 H 1.08994 * 117.49984 * 359.97438 * 28 11 10 47 47 H 1.09007 * 117.50026 * 145.00270 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0700 -4.8163 0.1386 12 6 0.3073 -4.8768 1.4636 13 6 1.1945 -5.5154 2.5341 14 7 0.5062 -5.4750 3.8267 15 6 1.1012 -5.9850 4.9232 16 8 2.2095 -6.4783 4.8397 17 6 0.4082 -5.9448 6.2239 18 6 -0.8541 -5.3787 6.3281 19 6 -1.5165 -5.3414 7.5480 20 6 -0.9423 -5.8484 8.6760 21 6 0.3364 -6.4258 8.6164 22 6 0.9523 -6.9573 9.7657 23 6 2.1979 -7.5035 9.6354 24 6 2.8206 -7.5231 8.3902 25 7 2.2422 -7.0262 7.3221 26 6 1.0274 -6.4795 7.3818 27 6 0.3335 -5.2737 -1.1220 28 6 1.4406 -6.1444 -0.5244 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3880 -0.0016 31 1 2.7578 -3.6724 0.8342 32 1 2.6078 -3.7589 -0.9373 33 1 -0.5956 -5.4740 1.3362 34 1 0.0348 -3.8675 1.7723 35 1 1.4007 -6.5512 2.2645 36 1 2.1325 -4.9647 2.6046 37 1 -0.3777 -5.0812 3.8933 38 1 -1.3284 -4.9658 5.4500 39 1 -2.5005 -4.8999 7.6051 40 1 -1.4719 -5.8064 9.6164 41 1 0.4544 -6.9330 10.7237 42 1 2.6988 -7.9195 10.4971 43 1 3.8054 -7.9575 8.3013 44 1 -0.6946 -5.6177 -1.0074 45 1 0.5524 -4.7482 -2.0514 46 1 2.3882 -6.1919 -1.0609 47 1 1.1409 -7.0613 -0.0168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166006165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:11 Heat of formation + Delta-G solvation = 36.532997 kcal Electronic energy + Delta-G solvation = -27955.921483 eV Core-core repulsion = 24103.737901 eV Total energy + Delta-G solvation = -3852.183582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.97056 -40.46142 -39.46995 -37.91979 -36.10252 -35.70510 -34.43132 -32.78637 -31.97938 -31.46766 -30.36166 -27.82577 -25.82277 -25.05763 -24.62764 -24.40848 -23.69550 -22.83552 -21.53194 -20.03415 -19.26110 -19.03777 -18.69120 -17.84979 -17.11607 -16.82841 -16.74123 -16.57249 -16.10805 -15.71510 -15.68120 -15.31246 -15.19144 -14.96222 -14.81199 -14.70797 -14.17696 -14.03999 -13.87242 -13.82457 -13.20731 -13.08572 -12.98029 -12.80209 -12.75136 -12.55926 -12.30707 -12.27071 -12.15650 -11.93897 -11.84438 -11.49246 -11.15771 -11.07600 -10.90499 -10.58671 -10.13692 -10.11647 -9.81291 -9.28591 -8.97938 -7.95322 -5.22785 -0.84123 -0.17450 0.75217 1.45439 1.46703 1.55239 1.77171 2.10275 2.22856 2.53575 2.89397 3.15955 3.33197 3.37250 3.53605 3.75065 3.81444 3.83465 3.87156 3.94411 3.98697 4.05085 4.07071 4.19490 4.23470 4.40664 4.42881 4.47171 4.50674 4.61905 4.70781 4.83398 4.91339 4.92722 4.95441 4.98728 5.07501 5.09938 5.17448 5.20684 5.26487 5.33717 5.35731 5.36851 5.43645 5.48120 5.56048 5.83619 6.27312 6.53687 7.06770 7.26839 7.34436 8.09993 8.37007 9.27875 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011474 B = 0.002442 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.617354 B =11465.049365 C =12487.324024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.070 4.070 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.247 4.247 8 H 0.068 0.932 9 N -0.734 5.734 10 C 0.188 3.812 11 C -0.140 4.140 12 C -0.075 4.075 13 C 0.138 3.862 14 N -0.718 5.718 15 C 0.545 3.455 16 O -0.552 6.552 17 C -0.153 4.153 18 C -0.048 4.048 19 C -0.132 4.132 20 C -0.055 4.055 21 C -0.131 4.131 22 C -0.050 4.050 23 C -0.176 4.176 24 C 0.118 3.882 25 N -0.501 5.501 26 C 0.130 3.870 27 C -0.160 4.160 28 C -0.153 4.153 29 H 0.252 0.748 30 H 0.378 0.622 31 H 0.014 0.986 32 H 0.013 0.987 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.038 0.962 37 H 0.410 0.590 38 H 0.154 0.846 39 H 0.172 0.828 40 H 0.177 0.823 41 H 0.183 0.817 42 H 0.175 0.825 43 H 0.171 0.829 44 H 0.110 0.890 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.283 -18.304 21.418 28.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.798 3.202 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.379 4.379 8 H 0.086 0.914 9 N -0.377 5.377 10 C 0.061 3.939 11 C -0.141 4.141 12 C -0.113 4.113 13 C 0.014 3.986 14 N -0.372 5.372 15 C 0.333 3.667 16 O -0.430 6.430 17 C -0.157 4.157 18 C -0.068 4.068 19 C -0.149 4.149 20 C -0.073 4.073 21 C -0.134 4.134 22 C -0.075 4.075 23 C -0.195 4.195 24 C -0.054 4.054 25 N -0.209 5.209 26 C 0.007 3.993 27 C -0.197 4.197 28 C -0.190 4.190 29 H 0.061 0.939 30 H 0.210 0.790 31 H 0.032 0.968 32 H 0.031 0.969 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.247 0.753 38 H 0.171 0.829 39 H 0.190 0.810 40 H 0.194 0.806 41 H 0.200 0.800 42 H 0.193 0.807 43 H 0.188 0.812 44 H 0.128 0.872 45 H 0.100 0.900 46 H 0.114 0.886 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.955 -18.527 20.450 28.036 hybrid contribution -0.150 1.412 0.216 1.437 sum -5.105 -17.115 20.666 27.314 Atomic orbital electron populations 1.69794 1.06301 1.26018 1.59368 1.25478 0.96434 1.00713 1.03686 0.85205 0.77653 0.79831 0.77470 1.21310 1.21795 1.20038 1.19584 0.91266 0.85610 1.41397 0.91445 1.42409 1.05652 1.00513 1.89106 1.20223 0.92676 0.84252 0.96719 1.21395 1.02316 0.96104 0.94272 1.21095 0.97546 1.01134 0.91508 1.21136 0.95262 1.00583 0.81622 1.45878 1.21810 1.61558 1.07932 1.18449 0.85534 0.78235 0.84468 1.90799 1.20596 1.45550 1.86059 1.19918 0.97134 1.06492 0.92173 1.21836 0.91481 0.92983 1.00514 1.21292 1.02093 1.00362 0.91191 1.21697 0.91982 0.92763 1.00859 1.19201 0.97485 1.02778 0.93890 1.21998 0.94617 0.92561 0.98342 1.22303 0.96638 1.01256 0.99340 1.23646 1.00272 0.92986 0.88474 1.68254 1.09846 1.09862 1.32905 1.18970 0.91130 0.96447 0.92731 1.23011 0.97940 1.02846 0.95937 1.23052 0.99817 0.93401 1.02732 0.93923 0.78993 0.96828 0.96904 0.88986 0.92111 0.91254 0.94321 0.75295 0.82881 0.81027 0.80610 0.79953 0.80730 0.81181 0.87184 0.90044 0.88649 0.86899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.00 13.06 21.65 0.28 -58.71 16 2 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 3 Si 0.97 47.19 29.55 68.60 2.03 49.21 16 4 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.25 -14.26 9.99 84.03 0.84 -13.42 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 9 N -0.73 -38.24 5.30 -343.45 -1.82 -40.06 16 10 C 0.19 8.02 6.10 86.38 0.53 8.55 16 11 C -0.14 -4.56 1.52 -52.19 -0.08 -4.64 16 12 C -0.08 -2.23 5.24 30.59 0.16 -2.07 16 13 C 0.14 4.28 5.51 86.38 0.48 4.76 16 14 N -0.72 -20.54 5.51 -466.37 -2.57 -23.11 16 15 C 0.55 18.50 7.76 86.67 0.67 19.17 16 16 O -0.55 -23.52 15.19 -4.04 -0.06 -23.58 16 17 C -0.15 -4.27 5.90 -19.86 -0.12 -4.39 16 18 C -0.05 -0.88 9.52 22.54 0.21 -0.67 16 19 C -0.13 -1.62 9.93 21.98 0.22 -1.40 16 20 C -0.05 -0.64 9.75 22.36 0.22 -0.43 16 21 C -0.13 -2.45 5.74 -21.29 -0.12 -2.57 16 22 C -0.05 -0.61 9.90 22.52 0.22 -0.39 16 23 C -0.18 -2.34 10.03 22.13 0.22 -2.12 16 24 C 0.12 2.55 11.15 85.02 0.95 3.50 16 25 N -0.50 -15.78 8.44 -187.96 -1.59 -17.36 16 26 C 0.13 3.67 6.61 40.61 0.27 3.94 16 27 C -0.16 -4.58 9.90 30.59 0.30 -4.28 16 28 C -0.15 -3.97 9.57 30.59 0.29 -3.68 16 29 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.38 20.48 7.46 -92.71 -0.69 19.79 16 31 H 0.01 0.62 7.69 -2.38 -0.02 0.60 16 32 H 0.01 0.57 8.09 -2.39 -0.02 0.55 16 33 H 0.09 2.19 7.94 -2.39 -0.02 2.17 16 34 H 0.06 2.14 7.64 -2.38 -0.02 2.12 16 35 H 0.07 2.09 7.80 -2.39 -0.02 2.07 16 36 H 0.04 1.46 7.69 -2.39 -0.02 1.44 16 37 H 0.41 9.06 6.50 -92.71 -0.60 8.46 16 38 H 0.15 2.08 6.37 -2.91 -0.02 2.06 16 39 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 40 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 41 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 42 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 43 H 0.17 2.87 8.06 -2.91 -0.02 2.84 16 44 H 0.11 2.67 8.08 -2.38 -0.02 2.66 16 45 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 46 H 0.10 2.44 8.14 -2.39 -0.02 2.43 16 47 H 0.11 2.47 7.98 -2.38 -0.02 2.45 16 Total: -1.00 -84.79 393.91 1.72 -83.08 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: -0.29 Total: 34.34 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 5.73 Total: -3.80 kcal Atomic # 7 Polarization: -133.56 SS G_CDS: -5.69 Total: -139.25 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.06 Total: -23.58 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.21 kcal Total: -84.79 1.72 -83.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166006165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.608 kcal (2) G-P(sol) polarization free energy of solvation -84.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds