Wall clock time and date at job start Tue Mar 31 2020 22:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 120.00113 * 2 1 4 4 H 1.48500 * 109.46831 * 240.00267 * 3 2 1 5 5 H 1.48503 * 109.47165 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47351 * 119.99836 * 3 2 1 7 7 C 1.38814 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99311 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00148 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00009 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47235 * 174.37342 * 10 9 7 12 12 C 1.53000 * 115.54837 * 294.94808 * 11 10 9 13 13 C 1.52999 * 109.47254 * 279.32695 * 12 11 10 14 14 N 1.46500 * 109.47096 * 175.45486 * 13 12 11 15 15 C 1.34783 * 120.00280 * 179.97438 * 14 13 12 16 16 O 1.21550 * 119.99774 * 0.02562 * 15 14 13 17 17 C 1.47886 * 120.00336 * 179.97438 * 15 14 13 18 18 C 1.40599 * 119.72796 * 0.02815 * 17 15 14 19 19 C 1.35850 * 120.94983 * 179.97438 * 18 17 15 20 20 C 1.40485 * 119.88213 * 0.03818 * 19 18 17 21 21 C 1.40485 * 121.84273 * 179.97438 * 20 19 18 22 22 N 1.31207 * 119.94684 * 179.97438 * 21 20 19 23 23 C 1.32562 * 122.79908 * 359.69968 * 22 21 20 24 24 C 1.36218 * 121.84645 * 0.60002 * 23 22 21 25 25 C 1.40760 * 118.67569 * 359.42511 * 24 23 22 26 26 C 1.38524 * 119.73127 * 179.97438 * 17 15 14 27 27 C 1.52995 * 117.52266 * 80.65502 * 11 10 9 28 28 C 1.52995 * 60.00568 * 107.48036 * 27 11 10 29 29 H 0.97001 * 119.99465 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00346 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.47020 * 54.36835 * 10 9 7 32 32 H 1.09002 * 109.47177 * 294.37629 * 10 9 7 33 33 H 1.08999 * 109.47362 * 159.32503 * 12 11 10 34 34 H 1.08998 * 109.47310 * 39.32563 * 12 11 10 35 35 H 1.08999 * 109.47507 * 55.45765 * 13 12 11 36 36 H 1.09001 * 109.47349 * 295.45541 * 13 12 11 37 37 H 0.97004 * 120.00306 * 0.02562 * 14 13 12 38 38 H 1.08007 * 119.52538 * 359.97438 * 18 17 15 39 39 H 1.08007 * 120.05474 * 180.02562 * 19 18 17 40 40 H 1.08003 * 120.02500 * 359.95814 * 21 20 19 41 41 H 1.08002 * 119.08188 * 180.32379 * 23 22 21 42 42 H 1.08008 * 120.66722 * 179.69556 * 24 23 22 43 43 H 1.08004 * 120.36403 * 359.97438 * 26 17 15 44 44 H 1.09004 * 117.50121 * 214.97290 * 27 11 10 45 45 H 1.09005 * 117.49554 * 359.97438 * 27 11 10 46 46 H 1.08996 * 117.50282 * 252.51581 * 28 27 11 47 47 H 1.09001 * 117.50039 * 107.48476 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0698 -4.8162 0.1420 12 6 0.3081 -4.8760 1.4675 13 6 1.1961 -5.5143 2.5376 14 7 0.5087 -5.4732 3.8307 15 6 1.1044 -5.9828 4.9271 16 8 2.2121 -6.4760 4.8431 17 6 0.4107 -5.9409 6.2325 18 6 -0.8703 -5.3685 6.3233 19 6 -1.5302 -5.3174 7.5097 20 6 -0.9305 -5.8409 8.6673 21 6 -1.5752 -5.8092 9.9150 22 7 -0.9808 -6.3096 10.9723 23 6 0.2231 -6.8624 10.9249 24 6 0.9345 -6.9374 9.7656 25 6 0.3623 -6.4216 8.5875 26 6 1.0280 -6.4667 7.3556 27 6 0.3323 -5.2742 -1.1178 28 6 1.4397 -6.1447 -0.5208 29 1 -0.4849 0.8401 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.7582 -3.6721 0.8359 32 1 2.6070 -3.7594 -0.9355 33 1 -0.5949 -5.4732 1.3411 34 1 0.0359 -3.8667 1.7761 35 1 2.1341 -4.9636 2.6072 36 1 1.4020 -6.5502 2.2684 37 1 -0.3755 -5.0799 3.8977 38 1 -1.3364 -4.9638 5.4371 39 1 -2.5140 -4.8748 7.5628 40 1 -2.5593 -5.3731 10.0040 41 1 0.6540 -7.2606 11.8317 42 1 1.9161 -7.3876 9.7498 43 1 2.0115 -6.9068 7.2824 44 1 -0.6956 -5.6181 -1.0024 45 1 0.5508 -4.7492 -2.0478 46 1 2.3870 -6.1926 -1.0578 47 1 1.1405 -7.0613 -0.0123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167652124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:58 Heat of formation + Delta-G solvation = 49.339044 kcal Electronic energy + Delta-G solvation = -27521.415465 eV Core-core repulsion = 23669.787195 eV Total energy + Delta-G solvation = -3851.628270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.26738 -39.83802 -38.33969 -37.26677 -35.01943 -33.93528 -33.38990 -31.95989 -30.78783 -30.01978 -29.82866 -26.11086 -25.36791 -24.17388 -23.35744 -22.77567 -22.53189 -21.78260 -21.07686 -19.04714 -18.20083 -17.98490 -17.08377 -17.02279 -16.43568 -15.87744 -15.66326 -15.33008 -15.08194 -14.66133 -14.49018 -14.30896 -14.19225 -14.04238 -13.91360 -13.45019 -13.22080 -13.13644 -12.76867 -12.70128 -12.35712 -12.24160 -11.94905 -11.49855 -11.48609 -11.15847 -10.98359 -10.83658 -10.65363 -10.64444 -10.22814 -10.11801 -9.92880 -9.87790 -9.67120 -9.52163 -9.35052 -9.08386 -8.85937 -8.49974 -6.91692 -5.77491 -3.05278 -0.16480 0.30000 1.45970 2.21693 2.98820 3.12992 3.43601 3.47974 3.48815 3.71020 4.00101 4.02862 4.11060 4.27033 4.35479 4.47095 4.60356 4.60641 4.74715 4.82166 4.98400 5.05450 5.12203 5.18707 5.27067 5.28321 5.31345 5.49081 5.52790 5.57139 5.62271 5.64484 5.71472 5.85946 5.88882 5.90204 6.11535 6.15557 6.19399 6.20644 6.30282 6.37638 6.40885 6.44175 6.52395 6.74085 6.82519 7.37311 7.55521 7.69232 8.05773 8.41861 9.53429 10.11482 10.47349 11.45294 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011512 B = 0.002234 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.583720 B =12529.270278 C =13973.482184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.187 3.813 11 C -0.119 4.119 12 C -0.092 4.092 13 C 0.124 3.876 14 N -0.718 5.718 15 C 0.553 3.447 16 O -0.536 6.536 17 C -0.109 4.109 18 C -0.094 4.094 19 C -0.089 4.089 20 C -0.098 4.098 21 C 0.144 3.856 22 N -0.485 5.485 23 C 0.072 3.928 24 C -0.144 4.144 25 C -0.034 4.034 26 C -0.044 4.044 27 C -0.164 4.164 28 C -0.178 4.178 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.027 0.973 32 H 0.017 0.983 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.401 0.599 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.166 0.834 41 H 0.155 0.845 42 H 0.142 0.858 43 H 0.147 0.853 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.675 -16.819 16.074 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.371 5.371 10 C 0.060 3.940 11 C -0.120 4.120 12 C -0.129 4.129 13 C 0.001 3.999 14 N -0.370 5.370 15 C 0.340 3.660 16 O -0.414 6.414 17 C -0.114 4.114 18 C -0.112 4.112 19 C -0.109 4.109 20 C -0.101 4.101 21 C -0.028 4.028 22 N -0.192 5.192 23 C -0.071 4.071 24 C -0.164 4.164 25 C -0.040 4.040 26 C -0.063 4.063 27 C -0.201 4.201 28 C -0.215 4.215 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.044 0.956 32 H 0.035 0.965 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.236 0.764 38 H 0.151 0.849 39 H 0.159 0.841 40 H 0.183 0.817 41 H 0.172 0.828 42 H 0.159 0.841 43 H 0.165 0.835 44 H 0.107 0.893 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.035 -17.082 16.856 24.335 hybrid contribution 0.184 1.195 -0.901 1.508 sum -3.852 -15.887 15.955 22.842 Atomic orbital electron populations 1.69652 1.05049 1.25674 1.57917 1.24714 0.95525 0.97597 1.03133 0.86280 0.78539 0.83594 0.77867 1.21307 1.21705 1.21302 1.19189 0.90999 0.84184 1.42529 0.91330 1.42279 1.05878 0.99627 1.89350 1.20186 0.91911 0.84192 0.97743 1.21556 1.01767 0.96050 0.92663 1.21261 0.96840 1.02316 0.92511 1.21428 0.96540 1.01202 0.80698 1.45974 1.21469 1.60848 1.08675 1.18205 0.85529 0.78471 0.83799 1.90785 1.19381 1.45298 1.85911 1.20078 0.95481 1.01679 0.94116 1.21031 0.93586 0.97850 0.98753 1.20905 1.00251 0.98560 0.91154 1.19174 0.94863 0.99983 0.96037 1.23277 0.99023 0.93884 0.86588 1.67399 1.10763 1.08839 1.32230 1.22213 0.90439 0.96551 0.97904 1.22011 1.01407 1.00334 0.92609 1.18149 0.93820 0.97810 0.94181 1.21441 0.99654 0.95353 0.89893 1.22965 0.96446 1.03056 0.97656 1.22978 1.00084 0.94022 1.04430 0.93539 0.78164 0.95557 0.96532 0.91890 0.89371 0.90667 0.91488 0.76391 0.84863 0.84112 0.81677 0.82785 0.84052 0.83526 0.89313 0.88572 0.88913 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.92 5.30 -59.91 -0.32 -18.24 16 10 C 0.19 3.72 6.10 -4.05 -0.02 3.70 16 11 C -0.12 -1.85 1.52 -154.51 -0.23 -2.08 16 12 C -0.09 -1.26 5.24 -26.73 -0.14 -1.40 16 13 C 0.12 1.68 5.51 -4.04 -0.02 1.65 16 14 N -0.72 -8.62 5.50 -61.24 -0.34 -8.96 16 15 C 0.55 7.41 7.77 -12.31 -0.10 7.31 16 16 O -0.54 -8.99 16.30 5.32 0.09 -8.90 16 17 C -0.11 -1.19 5.87 -104.95 -0.62 -1.81 16 18 C -0.09 -0.80 9.44 -39.55 -0.37 -1.17 16 19 C -0.09 -0.67 9.77 -39.59 -0.39 -1.05 16 20 C -0.10 -0.87 5.75 -106.78 -0.61 -1.48 16 21 C 0.14 1.17 11.04 -16.97 -0.19 0.98 16 22 N -0.48 -4.61 10.29 -13.15 -0.14 -4.75 16 23 C 0.07 0.59 11.07 -17.96 -0.20 0.39 16 24 C -0.14 -1.16 9.88 -39.36 -0.39 -1.55 16 25 C -0.03 -0.33 5.74 -106.83 -0.61 -0.95 16 26 C -0.04 -0.47 9.38 -38.78 -0.36 -0.83 16 27 C -0.16 -2.34 9.90 -26.74 -0.26 -2.60 16 28 C -0.18 -2.30 9.57 -26.73 -0.26 -2.55 16 29 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.38 9.89 7.46 -40.82 -0.30 9.59 16 31 H 0.03 0.54 7.69 -51.92 -0.40 0.14 16 32 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 33 H 0.06 0.74 7.94 -51.93 -0.41 0.33 16 34 H 0.09 1.43 7.64 -51.93 -0.40 1.03 16 35 H 0.08 1.19 7.69 -51.93 -0.40 0.80 16 36 H 0.07 0.88 7.80 -51.93 -0.41 0.48 16 37 H 0.40 3.80 6.45 -40.82 -0.26 3.53 16 38 H 0.13 0.86 6.34 -52.48 -0.33 0.53 16 39 H 0.14 0.64 8.06 -52.48 -0.42 0.21 16 40 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 42 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.15 1.49 7.62 -52.48 -0.40 1.09 16 44 H 0.09 1.13 8.08 -51.93 -0.42 0.71 16 45 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 46 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.09 1.02 7.98 -51.93 -0.41 0.60 16 LS Contribution 395.79 15.07 5.96 5.96 Total: -1.00 -34.03 395.79 -10.71 -44.74 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.65 Total: 10.51 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -5.03 Total: -10.69 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.07 Total: -58.95 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.03 -10.71 -44.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167652124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.078 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds