Wall clock time and date at job start Tue Mar 31 2020 22:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 120.00113 * 2 1 4 4 H 1.48500 * 109.46831 * 240.00267 * 3 2 1 5 5 H 1.48503 * 109.47165 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47351 * 119.99836 * 3 2 1 7 7 C 1.38814 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99311 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00148 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00009 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47235 * 174.37342 * 10 9 7 12 12 C 1.53000 * 115.54837 * 294.94808 * 11 10 9 13 13 C 1.52999 * 109.47254 * 279.32695 * 12 11 10 14 14 N 1.46500 * 109.47096 * 175.45486 * 13 12 11 15 15 C 1.34783 * 120.00280 * 179.97438 * 14 13 12 16 16 O 1.21550 * 119.99774 * 0.02562 * 15 14 13 17 17 C 1.47886 * 120.00336 * 179.97438 * 15 14 13 18 18 C 1.40599 * 119.72796 * 0.02815 * 17 15 14 19 19 C 1.35850 * 120.94983 * 179.97438 * 18 17 15 20 20 C 1.40485 * 119.88213 * 0.03818 * 19 18 17 21 21 C 1.40485 * 121.84273 * 179.97438 * 20 19 18 22 22 N 1.31207 * 119.94684 * 179.97438 * 21 20 19 23 23 C 1.32562 * 122.79908 * 359.69968 * 22 21 20 24 24 C 1.36218 * 121.84645 * 0.60002 * 23 22 21 25 25 C 1.40760 * 118.67569 * 359.42511 * 24 23 22 26 26 C 1.38524 * 119.73127 * 179.97438 * 17 15 14 27 27 C 1.52995 * 117.52266 * 80.65502 * 11 10 9 28 28 C 1.52995 * 60.00568 * 107.48036 * 27 11 10 29 29 H 0.97001 * 119.99465 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00346 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.47020 * 54.36835 * 10 9 7 32 32 H 1.09002 * 109.47177 * 294.37629 * 10 9 7 33 33 H 1.08999 * 109.47362 * 159.32503 * 12 11 10 34 34 H 1.08998 * 109.47310 * 39.32563 * 12 11 10 35 35 H 1.08999 * 109.47507 * 55.45765 * 13 12 11 36 36 H 1.09001 * 109.47349 * 295.45541 * 13 12 11 37 37 H 0.97004 * 120.00306 * 0.02562 * 14 13 12 38 38 H 1.08007 * 119.52538 * 359.97438 * 18 17 15 39 39 H 1.08007 * 120.05474 * 180.02562 * 19 18 17 40 40 H 1.08003 * 120.02500 * 359.95814 * 21 20 19 41 41 H 1.08002 * 119.08188 * 180.32379 * 23 22 21 42 42 H 1.08008 * 120.66722 * 179.69556 * 24 23 22 43 43 H 1.08004 * 120.36403 * 359.97438 * 26 17 15 44 44 H 1.09004 * 117.50121 * 214.97290 * 27 11 10 45 45 H 1.09005 * 117.49554 * 359.97438 * 27 11 10 46 46 H 1.08996 * 117.50282 * 252.51581 * 28 27 11 47 47 H 1.09001 * 117.50039 * 107.48476 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0698 -4.8162 0.1420 12 6 0.3081 -4.8760 1.4675 13 6 1.1961 -5.5143 2.5376 14 7 0.5087 -5.4732 3.8307 15 6 1.1044 -5.9828 4.9271 16 8 2.2121 -6.4760 4.8431 17 6 0.4107 -5.9409 6.2325 18 6 -0.8703 -5.3685 6.3233 19 6 -1.5302 -5.3174 7.5097 20 6 -0.9305 -5.8409 8.6673 21 6 -1.5752 -5.8092 9.9150 22 7 -0.9808 -6.3096 10.9723 23 6 0.2231 -6.8624 10.9249 24 6 0.9345 -6.9374 9.7656 25 6 0.3623 -6.4216 8.5875 26 6 1.0280 -6.4667 7.3556 27 6 0.3323 -5.2742 -1.1178 28 6 1.4397 -6.1447 -0.5208 29 1 -0.4849 0.8401 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.7582 -3.6721 0.8359 32 1 2.6070 -3.7594 -0.9355 33 1 -0.5949 -5.4732 1.3411 34 1 0.0359 -3.8667 1.7761 35 1 2.1341 -4.9636 2.6072 36 1 1.4020 -6.5502 2.2684 37 1 -0.3755 -5.0799 3.8977 38 1 -1.3364 -4.9638 5.4371 39 1 -2.5140 -4.8748 7.5628 40 1 -2.5593 -5.3731 10.0040 41 1 0.6540 -7.2606 11.8317 42 1 1.9161 -7.3876 9.7498 43 1 2.0115 -6.9068 7.2824 44 1 -0.6956 -5.6181 -1.0024 45 1 0.5508 -4.7492 -2.0478 46 1 2.3870 -6.1926 -1.0578 47 1 1.1405 -7.0613 -0.0123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167652124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:57 Heat of formation + Delta-G solvation = 28.334822 kcal Electronic energy + Delta-G solvation = -27522.326276 eV Core-core repulsion = 23669.787195 eV Total energy + Delta-G solvation = -3852.539081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.96043 -40.81269 -39.55800 -38.01012 -36.21840 -35.77085 -34.03215 -32.78059 -32.74295 -30.87970 -30.65001 -27.84339 -26.31258 -24.81610 -24.63744 -24.34530 -23.28641 -22.88609 -22.05145 -20.19439 -19.36604 -18.88430 -18.68820 -17.77513 -17.24518 -16.89297 -16.79933 -16.59208 -16.11212 -15.93447 -15.67224 -15.28690 -15.23444 -14.98745 -14.79730 -14.66689 -14.62800 -14.21415 -13.88878 -13.81123 -13.46027 -13.17622 -13.07246 -13.00860 -12.76819 -12.57640 -12.27863 -12.18616 -12.11991 -11.92879 -11.85190 -11.28133 -11.25101 -11.07230 -10.89411 -10.58519 -10.52389 -10.35340 -10.05752 -9.13852 -8.96979 -7.94582 -5.21825 -0.85662 -0.36787 0.78889 1.43382 1.46402 1.48512 1.54622 2.00919 2.28898 2.54268 2.89879 3.03704 3.38040 3.45497 3.49200 3.51483 3.72480 3.79747 3.83586 3.85881 3.96406 3.98775 4.05798 4.08457 4.21758 4.29935 4.41089 4.48712 4.57632 4.62109 4.67078 4.73481 4.84791 4.90810 4.93300 4.97245 5.01530 5.08910 5.15980 5.17863 5.23818 5.27119 5.34797 5.35702 5.38989 5.48957 5.59487 5.69348 6.28021 6.41387 6.94561 7.06135 7.35325 8.11345 8.37716 9.28316 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011512 B = 0.002234 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.583720 B =12529.270278 C =13973.482184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.070 4.070 3 Si 0.968 3.032 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.068 0.932 9 N -0.734 5.734 10 C 0.187 3.813 11 C -0.139 4.139 12 C -0.077 4.077 13 C 0.132 3.868 14 N -0.709 5.709 15 C 0.551 3.449 16 O -0.579 6.579 17 C -0.122 4.122 18 C -0.103 4.103 19 C -0.076 4.076 20 C -0.110 4.110 21 C 0.146 3.854 22 N -0.507 5.507 23 C 0.066 3.934 24 C -0.151 4.151 25 C -0.050 4.050 26 C -0.056 4.056 27 C -0.163 4.163 28 C -0.151 4.151 29 H 0.252 0.748 30 H 0.377 0.623 31 H 0.017 0.983 32 H 0.012 0.988 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.414 0.586 38 H 0.154 0.846 39 H 0.177 0.823 40 H 0.197 0.803 41 H 0.177 0.823 42 H 0.158 0.842 43 H 0.139 0.861 44 H 0.110 0.890 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.020 -17.485 16.806 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.798 3.202 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.378 4.378 8 H 0.086 0.914 9 N -0.377 5.377 10 C 0.060 3.940 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.009 3.991 14 N -0.361 5.361 15 C 0.339 3.661 16 O -0.460 6.460 17 C -0.126 4.126 18 C -0.121 4.121 19 C -0.095 4.095 20 C -0.112 4.112 21 C -0.026 4.026 22 N -0.216 5.216 23 C -0.076 4.076 24 C -0.171 4.171 25 C -0.056 4.056 26 C -0.075 4.075 27 C -0.200 4.200 28 C -0.189 4.189 29 H 0.060 0.940 30 H 0.210 0.790 31 H 0.035 0.965 32 H 0.030 0.970 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.252 0.748 38 H 0.171 0.829 39 H 0.195 0.805 40 H 0.214 0.786 41 H 0.194 0.806 42 H 0.176 0.824 43 H 0.157 0.843 44 H 0.128 0.872 45 H 0.098 0.902 46 H 0.113 0.887 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.377 -17.763 17.583 25.566 hybrid contribution 0.631 1.354 -1.093 1.852 sum -4.746 -16.409 16.490 23.742 Atomic orbital electron populations 1.69791 1.06279 1.26058 1.59329 1.25467 0.96415 1.00688 1.03736 0.85291 0.77319 0.79622 0.78008 1.20645 1.21836 1.20757 1.19545 0.91281 0.85596 1.41427 0.91371 1.42407 1.05655 1.00522 1.89122 1.20239 0.92711 0.84207 0.96798 1.21399 1.02274 0.96088 0.94283 1.21110 0.97617 1.01263 0.91507 1.21244 0.95416 1.01071 0.81368 1.45873 1.21874 1.60358 1.07961 1.18633 0.85083 0.77599 0.84789 1.90753 1.21275 1.47322 1.86622 1.20005 0.96665 1.03189 0.92749 1.21229 0.92692 0.97997 1.00178 1.21292 1.01262 0.96976 0.89969 1.19456 0.94683 1.00035 0.97047 1.23794 0.99955 0.93002 0.85835 1.67461 1.11459 1.09659 1.32977 1.22607 0.90197 0.96072 0.98729 1.22230 1.02253 1.00401 0.92209 1.18351 0.94584 0.98425 0.94193 1.21453 0.99655 0.95901 0.90498 1.23012 0.97994 1.03010 0.96000 1.23062 0.99736 0.93399 1.02675 0.93956 0.79004 0.96520 0.97042 0.88919 0.92051 0.93713 0.90630 0.74810 0.82877 0.80542 0.78608 0.80637 0.82426 0.84336 0.87214 0.90232 0.88690 0.86680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.87 13.06 21.65 0.28 -57.58 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 3 Si 0.97 46.21 29.55 68.60 2.03 48.24 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 8 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 9 N -0.73 -36.87 5.30 -343.46 -1.82 -38.68 16 10 C 0.19 7.55 6.10 86.38 0.53 8.08 16 11 C -0.14 -4.20 1.52 -52.18 -0.08 -4.28 16 12 C -0.08 -2.06 5.24 30.59 0.16 -1.89 16 13 C 0.13 3.53 5.51 86.38 0.48 4.01 16 14 N -0.71 -16.70 5.50 -465.93 -2.56 -19.26 16 15 C 0.55 14.95 7.77 86.80 0.67 15.63 16 16 O -0.58 -20.16 16.30 -3.87 -0.06 -20.22 16 17 C -0.12 -2.65 5.87 -20.08 -0.12 -2.77 16 18 C -0.10 -1.58 9.44 22.29 0.21 -1.37 16 19 C -0.08 -0.94 9.77 22.26 0.22 -0.72 16 20 C -0.11 -1.76 5.75 -21.26 -0.12 -1.88 16 21 C 0.15 2.04 11.04 85.33 0.94 2.98 16 22 N -0.51 -8.84 10.29 -195.50 -2.01 -10.85 16 23 C 0.07 1.00 11.07 84.11 0.93 1.93 16 24 C -0.15 -2.37 9.88 22.42 0.22 -2.15 16 25 C -0.05 -0.95 5.74 -21.29 -0.12 -1.07 16 26 C -0.06 -1.20 9.38 22.79 0.21 -0.99 16 27 C -0.16 -4.36 9.90 30.59 0.30 -4.06 16 28 C -0.15 -3.57 9.57 30.60 0.29 -3.28 16 29 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 30 H 0.38 19.81 7.46 -92.71 -0.69 19.11 16 31 H 0.02 0.71 7.69 -2.38 -0.02 0.69 16 32 H 0.01 0.48 8.09 -2.39 -0.02 0.46 16 33 H 0.09 1.93 7.94 -2.39 -0.02 1.91 16 34 H 0.06 1.98 7.64 -2.39 -0.02 1.96 16 35 H 0.04 1.47 7.69 -2.39 -0.02 1.45 16 36 H 0.08 1.90 7.80 -2.39 -0.02 1.88 16 37 H 0.41 7.34 6.45 -92.71 -0.60 6.74 16 38 H 0.15 1.63 6.34 -2.91 -0.02 1.61 16 39 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 40 H 0.20 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 42 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.14 3.05 7.62 -2.91 -0.02 3.03 16 44 H 0.11 2.48 8.08 -2.38 -0.02 2.46 16 45 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 46 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.11 2.18 7.98 -2.39 -0.02 2.16 16 Total: -1.00 -74.99 395.79 1.60 -73.40 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -0.29 Total: 33.37 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 6.03 Total: -8.40 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -6.11 Total: -126.38 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.06 Total: -20.22 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -74.99 1.60 -73.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167652124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.731 kcal (2) G-P(sol) polarization free energy of solvation -74.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds