Wall clock time and date at job start Tue Mar 31 2020 22:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00277 * 2 1 4 4 H 1.48501 * 109.47020 * 271.19978 * 3 2 1 5 5 H 1.48498 * 109.47013 * 31.20068 * 3 2 1 6 6 H 1.48501 * 109.47520 * 151.20164 * 3 2 1 7 7 C 1.38818 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99798 * 3.50624 * 7 2 1 9 9 N 1.36932 * 120.00344 * 183.50120 * 7 2 1 10 10 C 1.46501 * 120.00281 * 184.91381 * 9 7 2 11 11 C 1.53001 * 109.47113 * 185.11868 * 10 9 7 12 12 C 1.52997 * 115.54764 * 65.20558 * 11 10 9 13 13 C 1.53002 * 109.47537 * 40.14084 * 12 11 10 14 14 N 1.46497 * 109.47587 * 178.80694 * 13 12 11 15 15 C 1.34772 * 120.00104 * 184.87464 * 14 13 12 16 16 O 1.21496 * 120.00223 * 354.21313 * 15 14 13 17 17 C 1.48275 * 119.99910 * 174.47901 * 15 14 13 18 18 C 1.40282 * 119.24237 * 179.72488 * 17 15 14 19 19 C 1.36503 * 119.81826 * 179.97438 * 18 17 15 20 20 C 1.40762 * 118.24474 * 0.02562 * 19 18 17 21 21 C 1.40425 * 121.28197 * 180.02562 * 20 19 18 22 22 C 1.36132 * 119.64591 * 180.02562 * 21 20 19 23 23 C 1.39438 * 120.91744 * 359.95416 * 22 21 20 24 24 C 1.35993 * 121.08316 * 0.02562 * 23 22 21 25 25 C 1.40828 * 119.73782 * 0.02562 * 24 23 22 26 26 N 1.31877 * 119.24152 * 359.46021 * 17 15 14 27 27 C 1.52995 * 117.51701 * 210.90475 * 11 10 9 28 28 C 1.52997 * 117.49934 * 279.53591 * 11 10 9 29 29 H 0.97004 * 119.99815 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99698 * 4.91768 * 9 7 2 31 31 H 1.09001 * 109.46576 * 65.11863 * 10 9 7 32 32 H 1.08996 * 109.47310 * 305.12004 * 10 9 7 33 33 H 1.09001 * 109.47385 * 280.13512 * 12 11 10 34 34 H 1.08998 * 109.46951 * 160.14007 * 12 11 10 35 35 H 1.08995 * 109.46886 * 58.80356 * 13 12 11 36 36 H 1.09000 * 109.46768 * 298.81069 * 13 12 11 37 37 H 0.97007 * 119.99892 * 4.87410 * 14 13 12 38 38 H 1.07997 * 120.08833 * 0.02562 * 18 17 15 39 39 H 1.08004 * 120.87568 * 179.97438 * 19 18 17 40 40 H 1.07992 * 120.17632 * 359.97136 * 21 20 19 41 41 H 1.07999 * 119.53941 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.45743 * 180.02562 * 23 22 21 43 43 H 1.08002 * 120.12933 * 180.02562 * 24 23 22 44 44 H 1.09003 * 117.50113 * 214.97183 * 27 11 10 45 45 H 1.09001 * 117.50327 * 359.97438 * 27 11 10 46 46 H 1.09002 * 117.50216 * 359.97342 * 28 11 10 47 47 H 1.08998 * 117.50061 * 145.00131 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4723 2.0610 -1.3998 5 1 1.4606 2.6451 0.7253 6 1 3.5603 1.4329 0.6744 7 6 2.0102 -1.2022 0.0005 8 1 1.4717 -2.1366 -0.0562 9 7 3.3777 -1.2034 0.0730 10 6 4.1159 -2.4642 -0.0348 11 6 5.6048 -2.2054 0.2041 12 6 5.9746 -1.7305 1.6107 13 6 5.1462 -2.4985 2.6426 14 7 5.5206 -2.0641 3.9907 15 6 4.9895 -2.6759 5.0677 16 8 4.1228 -3.5151 4.9238 17 6 5.4587 -2.3207 6.4286 18 6 4.8909 -2.9633 7.5388 19 6 5.3144 -2.6457 8.7970 20 6 6.3198 -1.6702 8.9350 21 6 6.8032 -1.2951 10.1989 22 6 7.7760 -0.3475 10.2938 23 6 8.3013 0.2567 9.1521 24 6 7.8581 -0.0814 7.9117 25 6 6.8520 -1.0566 7.7712 26 7 6.4041 -1.4117 6.5673 27 6 6.6045 -3.1071 -0.5227 28 6 6.4226 -1.6539 -0.9655 29 1 -0.4850 0.8401 -0.0004 30 1 3.8575 -0.3693 0.1957 31 1 3.9752 -2.8835 -1.0311 32 1 3.7451 -3.1672 0.7110 33 1 5.7683 -0.6639 1.7001 34 1 7.0347 -1.9115 1.7883 35 1 5.3366 -3.5667 2.5391 36 1 4.0870 -2.3007 2.4782 37 1 6.1508 -1.3360 4.1081 38 1 4.1213 -3.7078 7.3983 39 1 4.8887 -3.1295 9.6637 40 1 6.4048 -1.7552 11.0910 41 1 8.1462 -0.0600 11.2667 42 1 9.0728 1.0055 9.2547 43 1 8.2762 0.3962 7.0379 44 1 7.5258 -3.3620 0.0012 45 1 6.2017 -3.8853 -1.1710 46 1 5.9000 -1.4759 -1.9054 47 1 7.2241 -0.9528 -0.7329 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167842996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:20 Heat of formation + Delta-G solvation = 57.714927 kcal Electronic energy + Delta-G solvation = -27993.019862 eV Core-core repulsion = 24141.754798 eV Total energy + Delta-G solvation = -3851.265064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.29340 -39.55639 -38.38518 -37.15082 -34.91454 -34.02177 -33.87585 -31.32314 -31.05013 -30.52227 -29.74518 -26.28265 -25.57794 -24.12840 -23.10972 -22.48834 -22.43767 -21.78549 -20.88304 -19.07913 -18.42701 -18.03266 -17.53920 -17.25220 -15.94012 -15.66912 -15.57781 -15.09509 -14.94178 -14.77934 -14.73931 -14.42736 -14.15931 -13.93100 -13.66136 -13.47420 -13.36979 -13.09603 -12.58513 -12.34433 -12.08515 -12.07760 -11.89288 -11.86051 -11.55418 -11.41072 -11.10644 -10.96726 -10.88090 -10.71868 -10.38622 -10.13046 -9.86493 -9.73428 -9.55796 -9.42635 -9.18732 -8.88447 -8.82503 -8.67298 -7.15463 -5.71147 -3.05869 -0.14700 0.32995 1.57145 2.18745 3.04886 3.08042 3.39852 3.43794 3.48549 3.76264 3.81722 3.97016 4.16182 4.37211 4.42352 4.56666 4.63947 4.74482 4.76011 4.90265 4.94294 4.98071 5.08582 5.10129 5.26552 5.36328 5.43046 5.55273 5.57939 5.62596 5.68336 5.71035 5.74321 5.81834 5.90600 5.93461 6.00114 6.08852 6.11118 6.22955 6.31605 6.36051 6.40014 6.42120 6.53513 6.71559 6.77182 7.28412 7.61577 8.07099 8.20308 8.48371 9.28426 10.00343 10.21489 11.47450 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011508 B = 0.002579 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.543524 B =10854.109150 C =11476.308283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.240 4.240 8 H 0.089 0.911 9 N -0.751 5.751 10 C 0.188 3.812 11 C -0.127 4.127 12 C -0.085 4.085 13 C 0.115 3.885 14 N -0.706 5.706 15 C 0.564 3.436 16 O -0.523 6.523 17 C 0.124 3.876 18 C -0.123 4.123 19 C -0.063 4.063 20 C -0.089 4.089 21 C -0.100 4.100 22 C -0.110 4.110 23 C -0.105 4.105 24 C -0.085 4.085 25 C 0.123 3.877 26 N -0.445 5.445 27 C -0.171 4.171 28 C -0.170 4.170 29 H 0.258 0.742 30 H 0.362 0.638 31 H 0.025 0.975 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.407 0.593 38 H 0.153 0.847 39 H 0.147 0.853 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.139 0.861 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.220 -3.048 19.793 29.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.717 3.283 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.370 4.370 8 H 0.107 0.893 9 N -0.397 5.397 10 C 0.061 3.939 11 C -0.128 4.128 12 C -0.123 4.123 13 C -0.007 4.007 14 N -0.356 5.356 15 C 0.347 3.653 16 O -0.398 6.398 17 C -0.029 4.029 18 C -0.144 4.144 19 C -0.089 4.089 20 C -0.091 4.091 21 C -0.119 4.119 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.103 4.103 25 C 0.000 4.000 26 N -0.157 5.157 27 C -0.209 4.209 28 C -0.207 4.207 29 H 0.068 0.932 30 H 0.195 0.805 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.243 0.757 38 H 0.171 0.829 39 H 0.164 0.836 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.156 0.844 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 20.763 -3.310 18.903 28.273 hybrid contribution 0.495 1.294 0.812 1.606 sum 21.258 -2.016 19.715 29.063 Atomic orbital electron populations 1.69709 1.05108 1.25684 1.57739 1.24676 0.95195 0.97115 1.02184 0.86527 0.79043 0.85145 0.77626 1.21213 1.21918 1.20500 1.19059 0.80794 0.94678 1.42452 0.89278 1.42679 1.04050 1.03478 1.89474 1.20228 0.85576 0.89693 0.98355 1.21646 0.94730 1.04296 0.92103 1.21183 0.98665 1.00414 0.92053 1.21610 1.01551 0.98768 0.78777 1.45858 1.46566 1.37267 1.05948 1.17853 0.81977 0.81995 0.83436 1.90823 1.29852 1.33387 1.85779 1.21465 0.93233 0.93424 0.94822 1.21802 1.00488 1.00361 0.91742 1.21484 0.94397 0.95000 0.97975 1.18996 0.97674 0.97741 0.94735 1.21013 0.97136 0.97794 0.95950 1.21007 0.96524 0.96223 0.99032 1.20943 0.99848 0.99691 0.92044 1.20898 0.95119 0.95794 0.98503 1.18857 0.96739 0.96780 0.87641 1.67826 1.10092 1.12023 1.25716 1.23027 1.00168 0.93900 1.03804 1.22962 1.02379 0.96191 0.99195 0.93153 0.80456 0.95732 0.94359 0.90918 0.91780 0.91201 0.88885 0.75714 0.82929 0.83573 0.84989 0.85343 0.85065 0.84366 0.89161 0.88743 0.88450 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.99 13.97 55.49 0.78 -29.22 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.89 22.62 27.90 -169.99 -4.74 17.88 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.28 -6.63 6.30 56.52 0.36 -6.27 16 7 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.75 -17.88 5.29 -59.91 -0.32 -18.20 16 10 C 0.19 3.68 5.32 -4.04 -0.02 3.66 16 11 C -0.13 -1.92 1.83 -154.51 -0.28 -2.21 16 12 C -0.09 -1.19 5.37 -26.73 -0.14 -1.34 16 13 C 0.12 1.81 4.80 -4.04 -0.02 1.79 16 14 N -0.71 -10.27 5.53 -61.12 -0.34 -10.60 16 15 C 0.56 8.94 7.81 -12.13 -0.09 8.84 16 16 O -0.52 -9.90 16.29 5.37 0.09 -9.81 16 17 C 0.12 1.68 6.75 -82.95 -0.56 1.12 16 18 C -0.12 -1.40 9.54 -39.44 -0.38 -1.78 16 19 C -0.06 -0.56 9.88 -39.25 -0.39 -0.95 16 20 C -0.09 -0.86 5.75 -106.71 -0.61 -1.47 16 21 C -0.10 -0.70 9.77 -39.52 -0.39 -1.08 16 22 C -0.11 -0.67 9.96 -39.89 -0.40 -1.06 16 23 C -0.11 -0.69 9.94 -39.94 -0.40 -1.09 16 24 C -0.08 -0.74 9.99 -39.41 -0.39 -1.14 16 25 C 0.12 1.37 6.61 -84.85 -0.56 0.81 16 26 N -0.44 -5.65 9.48 -7.54 -0.07 -5.72 16 27 C -0.17 -2.14 9.87 -26.73 -0.26 -2.40 16 28 C -0.17 -2.33 9.97 -26.73 -0.27 -2.60 16 29 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 30 H 0.36 8.49 5.46 -40.82 -0.22 8.26 16 31 H 0.02 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.04 0.78 6.69 -51.93 -0.35 0.43 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.74 7.95 -51.93 -0.41 0.33 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.81 6.84 -51.93 -0.36 1.46 16 37 H 0.41 5.17 7.80 -40.82 -0.32 4.85 16 38 H 0.15 1.65 7.60 -52.49 -0.40 1.25 16 39 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 42 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 45 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 47 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 393.97 15.07 5.94 5.94 Total: -1.00 -35.06 393.97 -10.81 -45.88 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -6.73 Total: 11.79 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -5.42 Total: -7.93 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: 0.05 Total: -63.74 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.74 Total: 17.88 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.06 -10.81 -45.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167842996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.591 kcal (2) G-P(sol) polarization free energy of solvation -35.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds