Wall clock time and date at job start Tue Mar 31 2020 22:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00277 * 2 1 4 4 H 1.48501 * 109.47020 * 271.19978 * 3 2 1 5 5 H 1.48498 * 109.47013 * 31.20068 * 3 2 1 6 6 H 1.48501 * 109.47520 * 151.20164 * 3 2 1 7 7 C 1.38818 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99798 * 3.50624 * 7 2 1 9 9 N 1.36932 * 120.00344 * 183.50120 * 7 2 1 10 10 C 1.46501 * 120.00281 * 184.91381 * 9 7 2 11 11 C 1.53001 * 109.47113 * 185.11868 * 10 9 7 12 12 C 1.52997 * 115.54764 * 65.20558 * 11 10 9 13 13 C 1.53002 * 109.47537 * 40.14084 * 12 11 10 14 14 N 1.46497 * 109.47587 * 178.80694 * 13 12 11 15 15 C 1.34772 * 120.00104 * 184.87464 * 14 13 12 16 16 O 1.21496 * 120.00223 * 354.21313 * 15 14 13 17 17 C 1.48275 * 119.99910 * 174.47901 * 15 14 13 18 18 C 1.40282 * 119.24237 * 179.72488 * 17 15 14 19 19 C 1.36503 * 119.81826 * 179.97438 * 18 17 15 20 20 C 1.40762 * 118.24474 * 0.02562 * 19 18 17 21 21 C 1.40425 * 121.28197 * 180.02562 * 20 19 18 22 22 C 1.36132 * 119.64591 * 180.02562 * 21 20 19 23 23 C 1.39438 * 120.91744 * 359.95416 * 22 21 20 24 24 C 1.35993 * 121.08316 * 0.02562 * 23 22 21 25 25 C 1.40828 * 119.73782 * 0.02562 * 24 23 22 26 26 N 1.31877 * 119.24152 * 359.46021 * 17 15 14 27 27 C 1.52995 * 117.51701 * 210.90475 * 11 10 9 28 28 C 1.52997 * 117.49934 * 279.53591 * 11 10 9 29 29 H 0.97004 * 119.99815 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99698 * 4.91768 * 9 7 2 31 31 H 1.09001 * 109.46576 * 65.11863 * 10 9 7 32 32 H 1.08996 * 109.47310 * 305.12004 * 10 9 7 33 33 H 1.09001 * 109.47385 * 280.13512 * 12 11 10 34 34 H 1.08998 * 109.46951 * 160.14007 * 12 11 10 35 35 H 1.08995 * 109.46886 * 58.80356 * 13 12 11 36 36 H 1.09000 * 109.46768 * 298.81069 * 13 12 11 37 37 H 0.97007 * 119.99892 * 4.87410 * 14 13 12 38 38 H 1.07997 * 120.08833 * 0.02562 * 18 17 15 39 39 H 1.08004 * 120.87568 * 179.97438 * 19 18 17 40 40 H 1.07992 * 120.17632 * 359.97136 * 21 20 19 41 41 H 1.07999 * 119.53941 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.45743 * 180.02562 * 23 22 21 43 43 H 1.08002 * 120.12933 * 180.02562 * 24 23 22 44 44 H 1.09003 * 117.50113 * 214.97183 * 27 11 10 45 45 H 1.09001 * 117.50327 * 359.97438 * 27 11 10 46 46 H 1.09002 * 117.50216 * 359.97342 * 28 11 10 47 47 H 1.08998 * 117.50061 * 145.00131 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4723 2.0610 -1.3998 5 1 1.4606 2.6451 0.7253 6 1 3.5603 1.4329 0.6744 7 6 2.0102 -1.2022 0.0005 8 1 1.4717 -2.1366 -0.0562 9 7 3.3777 -1.2034 0.0730 10 6 4.1159 -2.4642 -0.0348 11 6 5.6048 -2.2054 0.2041 12 6 5.9746 -1.7305 1.6107 13 6 5.1462 -2.4985 2.6426 14 7 5.5206 -2.0641 3.9907 15 6 4.9895 -2.6759 5.0677 16 8 4.1228 -3.5151 4.9238 17 6 5.4587 -2.3207 6.4286 18 6 4.8909 -2.9633 7.5388 19 6 5.3144 -2.6457 8.7970 20 6 6.3198 -1.6702 8.9350 21 6 6.8032 -1.2951 10.1989 22 6 7.7760 -0.3475 10.2938 23 6 8.3013 0.2567 9.1521 24 6 7.8581 -0.0814 7.9117 25 6 6.8520 -1.0566 7.7712 26 7 6.4041 -1.4117 6.5673 27 6 6.6045 -3.1071 -0.5227 28 6 6.4226 -1.6539 -0.9655 29 1 -0.4850 0.8401 -0.0004 30 1 3.8575 -0.3693 0.1957 31 1 3.9752 -2.8835 -1.0311 32 1 3.7451 -3.1672 0.7110 33 1 5.7683 -0.6639 1.7001 34 1 7.0347 -1.9115 1.7883 35 1 5.3366 -3.5667 2.5391 36 1 4.0870 -2.3007 2.4782 37 1 6.1508 -1.3360 4.1081 38 1 4.1213 -3.7078 7.3983 39 1 4.8887 -3.1295 9.6637 40 1 6.4048 -1.7552 11.0910 41 1 8.1462 -0.0600 11.2667 42 1 9.0728 1.0055 9.2547 43 1 8.2762 0.3962 7.0379 44 1 7.5258 -3.3620 0.0012 45 1 6.2017 -3.8853 -1.1710 46 1 5.9000 -1.4759 -1.9054 47 1 7.2241 -0.9528 -0.7329 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167842996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:18 Heat of formation + Delta-G solvation = 34.242758 kcal Electronic energy + Delta-G solvation = -27994.037692 eV Core-core repulsion = 24141.754798 eV Total energy + Delta-G solvation = -3852.282894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.08188 -40.68254 -39.61363 -37.88610 -36.20971 -35.93892 -34.61200 -33.23793 -32.14919 -31.25837 -30.70698 -28.07566 -26.51398 -24.89511 -24.29851 -24.09266 -23.10488 -23.06259 -22.03631 -20.51777 -19.62585 -19.07307 -18.77004 -18.20405 -17.12247 -16.85803 -16.64747 -16.41959 -16.28178 -15.79966 -15.62810 -15.46047 -15.26117 -15.10481 -14.95984 -14.70480 -14.43278 -14.17659 -14.05746 -13.99783 -13.44877 -13.09183 -12.88244 -12.78605 -12.64855 -12.59754 -12.47976 -12.24465 -12.21106 -11.93918 -11.85260 -11.67337 -11.49689 -11.10742 -10.97846 -10.69303 -10.57706 -10.23718 -9.83818 -9.29340 -9.28121 -8.03956 -5.36469 -0.89050 -0.37678 0.89402 1.33346 1.33713 1.38935 1.45615 1.93581 2.17432 2.46635 2.82733 2.90261 3.05381 3.26743 3.54088 3.62822 3.69619 3.74548 3.79706 3.84450 3.93193 4.04029 4.08856 4.14301 4.23064 4.35893 4.38470 4.45195 4.49082 4.57981 4.74724 4.84890 4.87466 4.93182 4.97001 5.01489 5.07315 5.08392 5.11220 5.19386 5.27063 5.35393 5.35762 5.36499 5.41969 5.47700 5.74688 5.84233 6.20444 6.27903 6.62622 7.02658 7.07742 7.83978 8.05839 9.18188 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011508 B = 0.002579 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.543524 B =10854.109150 C =11476.308283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.067 4.067 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.250 1.250 7 C -0.231 4.231 8 H 0.050 0.950 9 N -0.748 5.748 10 C 0.187 3.813 11 C -0.149 4.149 12 C -0.073 4.073 13 C 0.123 3.877 14 N -0.697 5.697 15 C 0.559 3.441 16 O -0.568 6.568 17 C 0.098 3.902 18 C -0.146 4.146 19 C -0.047 4.047 20 C -0.101 4.101 21 C -0.102 4.102 22 C -0.103 4.103 23 C -0.092 4.092 24 C -0.108 4.108 25 C 0.096 3.904 26 N -0.456 5.456 27 C -0.146 4.146 28 C -0.164 4.164 29 H 0.257 0.743 30 H 0.368 0.632 31 H 0.020 0.980 32 H 0.023 0.977 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.417 0.583 38 H 0.147 0.853 39 H 0.183 0.817 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.161 0.839 43 H 0.142 0.858 44 H 0.119 0.881 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.690 -1.413 22.336 34.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.258 4.258 3 Si 0.786 3.214 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.175 1.175 7 C -0.362 4.362 8 H 0.068 0.932 9 N -0.394 5.394 10 C 0.061 3.939 11 C -0.150 4.150 12 C -0.111 4.111 13 C 0.000 4.000 14 N -0.348 5.348 15 C 0.344 3.656 16 O -0.446 6.446 17 C -0.055 4.055 18 C -0.167 4.167 19 C -0.073 4.073 20 C -0.104 4.104 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.112 4.112 24 C -0.126 4.126 25 C -0.028 4.028 26 N -0.168 5.168 27 C -0.184 4.184 28 C -0.201 4.201 29 H 0.066 0.934 30 H 0.201 0.799 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.255 0.745 38 H 0.165 0.835 39 H 0.201 0.799 40 H 0.180 0.820 41 H 0.181 0.819 42 H 0.179 0.821 43 H 0.160 0.840 44 H 0.137 0.863 45 H 0.114 0.886 46 H 0.103 0.897 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 25.305 -1.685 21.435 33.206 hybrid contribution -0.834 0.737 0.174 1.127 sum 24.471 -0.948 21.609 32.660 Atomic orbital electron populations 1.69906 1.07260 1.26640 1.59862 1.25550 0.96140 1.01383 1.02688 0.85347 0.78596 0.79355 0.78101 1.20238 1.22412 1.17485 1.19013 0.83070 0.93247 1.40904 0.93244 1.42604 1.02307 1.05320 1.89163 1.20286 0.88684 0.87565 0.97366 1.21447 0.92045 1.07874 0.93586 1.21119 1.00141 0.99367 0.90449 1.21392 0.99320 0.99212 0.80069 1.45791 1.46356 1.37297 1.05378 1.18353 0.81245 0.81235 0.84731 1.90779 1.31828 1.35349 1.86635 1.21134 0.95109 0.95467 0.93776 1.21827 1.01292 1.01101 0.92452 1.21877 0.93363 0.94083 0.97940 1.19322 0.97757 0.97706 0.95565 1.21393 0.97112 0.97920 0.95654 1.21496 0.95322 0.94871 1.00374 1.21378 0.99378 0.99200 0.91251 1.21087 0.95428 0.96131 0.99960 1.19324 0.97829 0.97949 0.87684 1.67709 1.10004 1.11912 1.27178 1.23142 0.99656 0.93320 1.02236 1.23042 1.02009 0.97647 0.97405 0.93389 0.79865 0.96229 0.95937 0.91642 0.88192 0.91321 0.93562 0.74518 0.83486 0.79928 0.81963 0.81853 0.82092 0.84004 0.86303 0.88631 0.89674 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -66.02 13.97 21.65 0.30 -65.72 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 3 Si 0.96 47.37 27.90 68.60 1.91 49.28 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 6 H -0.25 -11.04 6.30 99.48 0.63 -10.41 16 7 C -0.23 -13.92 10.47 84.04 0.88 -13.04 16 8 H 0.05 3.30 8.06 -2.91 -0.02 3.27 16 9 N -0.75 -36.42 5.29 -343.45 -1.82 -38.24 16 10 C 0.19 7.51 5.32 86.38 0.46 7.97 16 11 C -0.15 -4.31 1.83 -52.19 -0.10 -4.41 16 12 C -0.07 -1.94 5.37 30.59 0.16 -1.78 16 13 C 0.12 4.01 4.80 86.38 0.41 4.42 16 14 N -0.70 -21.13 5.53 -465.58 -2.58 -23.71 16 15 C 0.56 19.02 7.81 86.91 0.68 19.70 16 16 O -0.57 -23.38 16.29 -3.70 -0.06 -23.44 16 17 C 0.10 2.79 6.75 42.31 0.29 3.07 16 18 C -0.15 -3.47 9.54 22.36 0.21 -3.26 16 19 C -0.05 -0.79 9.88 22.48 0.22 -0.57 16 20 C -0.10 -1.76 5.75 -21.22 -0.12 -1.88 16 21 C -0.10 -1.03 9.77 22.31 0.22 -0.81 16 22 C -0.10 -0.78 9.96 22.07 0.22 -0.56 16 23 C -0.09 -0.88 9.94 22.04 0.22 -0.66 16 24 C -0.11 -1.70 9.99 22.38 0.22 -1.47 16 25 C 0.10 2.06 6.61 40.47 0.27 2.33 16 26 N -0.46 -11.83 9.48 -177.77 -1.69 -13.52 16 27 C -0.15 -3.21 9.87 30.59 0.30 -2.91 16 28 C -0.16 -4.01 9.97 30.59 0.31 -3.71 16 29 H 0.26 16.35 8.31 -92.70 -0.77 15.58 16 30 H 0.37 17.01 5.46 -92.70 -0.51 16.51 16 31 H 0.02 0.81 8.09 -2.39 -0.02 0.79 16 32 H 0.02 0.98 6.69 -2.39 -0.02 0.96 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.10 1.97 7.95 -2.39 -0.02 1.95 16 35 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.05 1.94 6.84 -2.39 -0.02 1.92 16 37 H 0.42 10.72 7.80 -92.70 -0.72 10.00 16 38 H 0.15 3.49 7.60 -2.91 -0.02 3.47 16 39 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 41 H 0.16 0.14 8.06 -2.91 -0.02 0.12 16 42 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 43 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 44 H 0.12 2.01 8.09 -2.39 -0.02 1.99 16 45 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -82.93 393.97 1.09 -81.84 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: -0.31 Total: 34.69 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 5.32 Total: -1.19 kcal Atomic # 7 Polarization: -135.41 SS G_CDS: -5.77 Total: -141.18 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.06 Total: -23.44 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 1.91 Total: 49.28 kcal Total: -82.93 1.09 -81.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167842996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.083 kcal (2) G-P(sol) polarization free energy of solvation -82.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds