Wall clock time and date at job start Tue Mar 31 2020 23:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99910 * 2 1 4 4 H 1.48507 * 109.46997 * 270.00029 * 3 2 1 5 5 H 1.48496 * 109.47477 * 30.00095 * 3 2 1 6 6 H 1.48496 * 109.47265 * 150.00218 * 3 2 1 7 7 C 1.38807 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00022 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00191 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47489 * 180.02562 * 10 9 7 12 12 C 1.53045 * 109.46382 * 175.00021 * 11 10 9 13 13 C 1.53191 * 109.31300 * 181.37194 * 12 11 10 14 14 N 1.46926 * 108.77772 * 305.36381 * 13 12 11 15 15 C 1.34768 * 120.63354 * 233.59179 * 14 13 12 16 16 O 1.21590 * 120.00345 * 5.67922 * 15 14 13 17 17 C 1.47555 * 120.00344 * 185.68944 * 15 14 13 18 18 C 1.38693 * 120.38808 * 54.16927 * 17 15 14 19 19 C 1.38967 * 120.53985 * 180.02562 * 18 17 15 20 20 C 1.36213 * 121.23795 * 359.97438 * 19 18 17 21 21 C 1.40712 * 120.19628 * 0.03070 * 20 19 18 22 22 N 1.33690 * 120.93729 * 179.97438 * 21 20 19 23 23 C 1.31065 * 121.34171 * 180.02562 * 22 21 20 24 24 C 1.39336 * 121.70641 * 359.64271 * 23 22 21 25 25 C 1.36681 * 119.86645 * 0.65926 * 24 23 22 26 26 C 1.40474 * 118.17129 * 359.41146 * 25 24 23 27 27 C 1.46937 * 118.73673 * 53.85874 * 14 13 12 28 28 C 1.53044 * 109.44856 * 295.06140 * 11 10 9 29 29 H 0.97003 * 119.99427 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00114 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47173 * 60.00024 * 10 9 7 32 32 H 1.09005 * 109.47354 * 300.00816 * 10 9 7 33 33 H 1.08994 * 109.46015 * 55.02476 * 11 10 9 34 34 H 1.08997 * 109.49222 * 61.42047 * 12 11 10 35 35 H 1.08994 * 109.49518 * 301.32737 * 12 11 10 36 36 H 1.09004 * 109.58199 * 185.58029 * 13 12 11 37 37 H 1.08993 * 109.70300 * 65.22386 * 13 12 11 38 38 H 1.08006 * 119.73241 * 0.02562 * 18 17 15 39 39 H 1.08008 * 119.38215 * 179.97438 * 19 18 17 40 40 H 1.07993 * 119.90178 * 180.02562 * 20 19 18 41 41 H 1.08001 * 119.14733 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.07355 * 180.34434 * 24 23 22 43 43 H 1.08003 * 120.91417 * 179.68877 * 25 24 23 44 44 H 1.09002 * 109.58272 * 65.92913 * 27 14 13 45 45 H 1.08993 * 109.58596 * 186.35255 * 27 14 13 46 46 H 1.09001 * 109.49955 * 298.57233 * 28 11 10 47 47 H 1.08997 * 109.49743 * 58.66637 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.0639 -4.8196 -0.0012 12 6 1.8252 -6.1413 -0.1269 13 6 0.8248 -7.3010 -0.1617 14 7 -0.0415 -7.2139 1.0218 15 6 -0.1835 -8.2691 1.8480 16 8 0.4859 -9.2696 1.6770 17 6 -1.1514 -8.2104 2.9602 18 6 -2.4800 -7.8947 2.7181 19 6 -3.3942 -7.8381 3.7632 20 6 -3.0155 -8.0895 5.0473 21 6 -1.6779 -8.4137 5.3401 22 7 -1.2900 -8.6627 6.5950 23 6 -0.0462 -8.9649 6.8768 24 6 0.9296 -9.0489 5.8858 25 6 0.5998 -8.7995 4.5830 26 6 -0.7346 -8.4751 4.2871 27 6 -0.7549 -5.9564 1.2841 28 6 0.2676 -4.8101 1.3058 29 1 -0.4849 0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 2.6847 -3.7145 0.8894 32 1 2.6848 -3.7145 -0.8905 33 1 0.3805 -4.7127 -0.8435 34 1 2.4907 -6.2605 0.7280 35 1 2.4104 -6.1379 -1.0464 36 1 1.3634 -8.2486 -0.1514 37 1 0.2177 -7.2356 -1.0646 38 1 -2.8069 -7.6913 1.7090 39 1 -4.4242 -7.5900 3.5534 40 1 -3.7440 -8.0398 5.8429 41 1 0.2284 -9.1591 7.9032 42 1 1.9456 -9.3054 6.1470 43 1 1.3437 -8.8549 3.8019 44 1 -1.4880 -5.7811 0.4967 45 1 -1.2589 -6.0166 2.2487 46 1 0.9478 -4.9418 2.1472 47 1 -0.2558 -3.8592 1.4059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205811847.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:18 Heat of formation + Delta-G solvation = 30.205600 kcal Electronic energy + Delta-G solvation = -28971.788816 eV Core-core repulsion = 25119.330857 eV Total energy + Delta-G solvation = -3852.457958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.40153 -40.01558 -37.82414 -37.18126 -34.99269 -33.76100 -32.92372 -31.40973 -30.89353 -30.41135 -30.09178 -26.85536 -24.94490 -24.16385 -23.88356 -23.24330 -23.03677 -21.56389 -20.32729 -19.30817 -18.58656 -17.53032 -17.24544 -17.12804 -16.58233 -16.00968 -15.30966 -14.97692 -14.81055 -14.57642 -14.46951 -14.28355 -14.12903 -13.77617 -13.69044 -13.49110 -13.44304 -12.98803 -12.88397 -12.46665 -12.34816 -12.25655 -12.00232 -11.82141 -11.66933 -11.20943 -11.02474 -10.86062 -10.83100 -10.46127 -10.43787 -10.34576 -10.18018 -10.00806 -9.67535 -9.65741 -9.10888 -8.89423 -8.75536 -8.51965 -6.93882 -5.79236 -3.07326 -0.07160 0.50868 1.51914 2.36786 2.60784 2.88867 3.41874 3.47314 3.48727 3.80211 3.96772 4.10542 4.43051 4.47065 4.54784 4.56750 4.68757 4.80713 4.82557 4.93850 5.01154 5.03278 5.09859 5.15127 5.30115 5.42760 5.47332 5.50208 5.52213 5.59370 5.65904 5.72484 5.76024 5.89505 5.90677 5.97167 6.01058 6.04975 6.14371 6.17828 6.23571 6.37340 6.42735 6.46232 6.58575 6.76765 6.88331 7.21197 7.59425 7.68215 7.91667 8.40212 9.51439 10.09172 10.43895 11.43746 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013233 B = 0.002642 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.375510 B =10596.895842 C =11183.657801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.094 4.094 12 C -0.126 4.126 13 C 0.112 3.888 14 N -0.598 5.598 15 C 0.561 3.439 16 O -0.539 6.539 17 C -0.100 4.100 18 C -0.079 4.079 19 C -0.105 4.105 20 C -0.074 4.074 21 C 0.123 3.877 22 N -0.474 5.474 23 C 0.133 3.867 24 C -0.173 4.173 25 C -0.049 4.049 26 C -0.069 4.069 27 C 0.100 3.900 28 C -0.124 4.124 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.017 0.983 32 H 0.019 0.981 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.161 0.839 42 H 0.140 0.860 43 H 0.144 0.856 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.063 0.937 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.739 -20.551 8.441 22.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.113 4.113 12 C -0.164 4.164 13 C -0.010 4.010 14 N -0.330 5.330 15 C 0.349 3.651 16 O -0.417 6.417 17 C -0.104 4.104 18 C -0.097 4.097 19 C -0.125 4.125 20 C -0.092 4.092 21 C 0.002 3.998 22 N -0.182 5.182 23 C -0.039 4.039 24 C -0.193 4.193 25 C -0.075 4.075 26 C -0.072 4.072 27 C -0.022 4.022 28 C -0.162 4.162 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.179 0.821 42 H 0.158 0.842 43 H 0.161 0.839 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.082 0.918 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.958 -20.870 8.941 23.239 hybrid contribution 0.823 1.053 -0.694 1.506 sum -4.134 -19.816 8.247 21.858 Atomic orbital electron populations 1.69653 1.05078 1.25631 1.57945 1.24724 0.95535 0.97657 1.03082 0.86196 0.78672 0.83859 0.77518 1.21739 1.21763 1.20793 1.19229 0.91035 0.84222 1.42488 0.91279 1.42368 1.05802 0.99975 1.89475 1.20662 0.93149 0.85368 0.97754 1.21318 0.97886 0.94443 0.97663 1.21909 0.97706 0.93990 1.02817 1.21692 0.92536 1.00319 0.86432 1.48132 1.46282 1.12734 1.25857 1.18185 0.82254 0.83130 0.81509 1.90784 1.46270 1.31743 1.72890 1.19856 0.94783 1.03083 0.92651 1.21403 0.91773 0.96324 1.00245 1.20849 1.00258 0.99329 0.92030 1.20972 0.93862 0.97088 0.97321 1.18811 0.94025 0.98601 0.88328 1.68059 1.18597 1.11955 1.19604 1.23001 0.88028 0.92860 1.00033 1.21968 1.01608 1.02131 0.93582 1.21635 0.95183 0.93136 0.97556 1.18546 0.94796 1.00993 0.92869 1.22142 0.95052 0.82879 1.02162 1.21994 0.97882 0.98101 0.98215 0.93538 0.78282 0.96468 0.96344 0.90880 0.91555 0.90473 0.89079 0.91151 0.84647 0.84345 0.84235 0.82143 0.84220 0.83865 0.90774 0.89678 0.91816 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -17.98 5.32 -59.91 -0.32 -18.30 16 10 C 0.16 3.08 5.65 -4.05 -0.02 3.05 16 11 C -0.09 -1.41 2.19 -90.58 -0.20 -1.61 16 12 C -0.13 -1.56 5.36 -26.61 -0.14 -1.70 16 13 C 0.11 1.30 6.44 -3.71 -0.02 1.27 16 14 N -0.60 -7.25 2.97 -173.72 -0.52 -7.76 16 15 C 0.56 7.46 6.46 -12.46 -0.08 7.38 16 16 O -0.54 -8.53 15.16 5.29 0.08 -8.45 16 17 C -0.10 -1.20 4.63 -104.66 -0.48 -1.68 16 18 C -0.08 -0.75 7.75 -39.14 -0.30 -1.05 16 19 C -0.10 -0.87 9.92 -40.04 -0.40 -1.26 16 20 C -0.07 -0.71 9.96 -39.38 -0.39 -1.10 16 21 C 0.12 1.47 6.60 -84.88 -0.56 0.91 16 22 N -0.47 -5.56 10.34 -10.99 -0.11 -5.67 16 23 C 0.13 1.25 11.15 -17.47 -0.19 1.06 16 24 C -0.17 -1.62 10.03 -39.74 -0.40 -2.01 16 25 C -0.05 -0.58 9.30 -39.30 -0.37 -0.94 16 26 C -0.07 -0.86 5.76 -106.53 -0.61 -1.48 16 27 C 0.10 1.16 5.61 -3.48 -0.02 1.14 16 28 C -0.12 -1.78 5.26 -26.39 -0.14 -1.92 16 29 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.38 9.74 6.84 -40.82 -0.28 9.46 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.14 1.05 7.75 -52.48 -0.41 0.64 16 39 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 40 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.16 0.95 8.06 -52.49 -0.42 0.52 16 42 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.14 1.75 6.50 -52.48 -0.34 1.41 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 0.93 5.38 -51.93 -0.28 0.65 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.09 1.48 7.15 -51.93 -0.37 1.11 16 LS Contribution 379.39 15.07 5.72 5.72 Total: -1.00 -33.47 379.39 -10.69 -44.17 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.66 Total: 7.27 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -4.58 Total: -7.20 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.22 Total: -58.73 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.08 Total: -8.45 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.47 -10.69 -44.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205811847.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.373 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds