Wall clock time and date at job start Tue Mar 31 2020 23:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99910 * 2 1 4 4 H 1.48507 * 109.46997 * 270.00029 * 3 2 1 5 5 H 1.48496 * 109.47477 * 30.00095 * 3 2 1 6 6 H 1.48496 * 109.47265 * 150.00218 * 3 2 1 7 7 C 1.38807 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00022 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00191 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47489 * 180.02562 * 10 9 7 12 12 C 1.53045 * 109.46382 * 175.00021 * 11 10 9 13 13 C 1.53191 * 109.31300 * 181.37194 * 12 11 10 14 14 N 1.46926 * 108.77772 * 305.36381 * 13 12 11 15 15 C 1.34768 * 120.63354 * 233.59179 * 14 13 12 16 16 O 1.21590 * 120.00345 * 5.67922 * 15 14 13 17 17 C 1.47555 * 120.00344 * 185.68944 * 15 14 13 18 18 C 1.38693 * 120.38808 * 54.16927 * 17 15 14 19 19 C 1.38967 * 120.53985 * 180.02562 * 18 17 15 20 20 C 1.36213 * 121.23795 * 359.97438 * 19 18 17 21 21 C 1.40712 * 120.19628 * 0.03070 * 20 19 18 22 22 N 1.33690 * 120.93729 * 179.97438 * 21 20 19 23 23 C 1.31065 * 121.34171 * 180.02562 * 22 21 20 24 24 C 1.39336 * 121.70641 * 359.64271 * 23 22 21 25 25 C 1.36681 * 119.86645 * 0.65926 * 24 23 22 26 26 C 1.40474 * 118.17129 * 359.41146 * 25 24 23 27 27 C 1.46937 * 118.73673 * 53.85874 * 14 13 12 28 28 C 1.53044 * 109.44856 * 295.06140 * 11 10 9 29 29 H 0.97003 * 119.99427 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00114 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47173 * 60.00024 * 10 9 7 32 32 H 1.09005 * 109.47354 * 300.00816 * 10 9 7 33 33 H 1.08994 * 109.46015 * 55.02476 * 11 10 9 34 34 H 1.08997 * 109.49222 * 61.42047 * 12 11 10 35 35 H 1.08994 * 109.49518 * 301.32737 * 12 11 10 36 36 H 1.09004 * 109.58199 * 185.58029 * 13 12 11 37 37 H 1.08993 * 109.70300 * 65.22386 * 13 12 11 38 38 H 1.08006 * 119.73241 * 0.02562 * 18 17 15 39 39 H 1.08008 * 119.38215 * 179.97438 * 19 18 17 40 40 H 1.07993 * 119.90178 * 180.02562 * 20 19 18 41 41 H 1.08001 * 119.14733 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.07355 * 180.34434 * 24 23 22 43 43 H 1.08003 * 120.91417 * 179.68877 * 25 24 23 44 44 H 1.09002 * 109.58272 * 65.92913 * 27 14 13 45 45 H 1.08993 * 109.58596 * 186.35255 * 27 14 13 46 46 H 1.09001 * 109.49955 * 298.57233 * 28 11 10 47 47 H 1.08997 * 109.49743 * 58.66637 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.0639 -4.8196 -0.0012 12 6 1.8252 -6.1413 -0.1269 13 6 0.8248 -7.3010 -0.1617 14 7 -0.0415 -7.2139 1.0218 15 6 -0.1835 -8.2691 1.8480 16 8 0.4859 -9.2696 1.6770 17 6 -1.1514 -8.2104 2.9602 18 6 -2.4800 -7.8947 2.7181 19 6 -3.3942 -7.8381 3.7632 20 6 -3.0155 -8.0895 5.0473 21 6 -1.6779 -8.4137 5.3401 22 7 -1.2900 -8.6627 6.5950 23 6 -0.0462 -8.9649 6.8768 24 6 0.9296 -9.0489 5.8858 25 6 0.5998 -8.7995 4.5830 26 6 -0.7346 -8.4751 4.2871 27 6 -0.7549 -5.9564 1.2841 28 6 0.2676 -4.8101 1.3058 29 1 -0.4849 0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 2.6847 -3.7145 0.8894 32 1 2.6848 -3.7145 -0.8905 33 1 0.3805 -4.7127 -0.8435 34 1 2.4907 -6.2605 0.7280 35 1 2.4104 -6.1379 -1.0464 36 1 1.3634 -8.2486 -0.1514 37 1 0.2177 -7.2356 -1.0646 38 1 -2.8069 -7.6913 1.7090 39 1 -4.4242 -7.5900 3.5534 40 1 -3.7440 -8.0398 5.8429 41 1 0.2284 -9.1591 7.9032 42 1 1.9456 -9.3054 6.1470 43 1 1.3437 -8.8549 3.8019 44 1 -1.4880 -5.7811 0.4967 45 1 -1.2589 -6.0166 2.2487 46 1 0.9478 -4.9418 2.1472 47 1 -0.2558 -3.8592 1.4059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205811847.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:17 Heat of formation + Delta-G solvation = 10.317249 kcal Electronic energy + Delta-G solvation = -28972.651239 eV Core-core repulsion = 25119.330857 eV Total energy + Delta-G solvation = -3853.320382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.23191 -40.96531 -38.98272 -37.95819 -36.58330 -34.66250 -34.39697 -32.63409 -31.94185 -31.62510 -31.03568 -28.29254 -26.06356 -25.33198 -24.71947 -24.34234 -24.25921 -22.85467 -21.50641 -20.29518 -19.44876 -19.09496 -18.30056 -18.05508 -17.57361 -16.93944 -16.69937 -16.21948 -15.74814 -15.63295 -15.46045 -15.37424 -15.33174 -15.22226 -14.98886 -14.53032 -14.27058 -14.14897 -14.03776 -13.82181 -13.52210 -13.18476 -13.05944 -12.94043 -12.76726 -12.71007 -12.39774 -12.24147 -12.16397 -11.96755 -11.70397 -11.65253 -11.56976 -11.34462 -11.17899 -10.92204 -10.50950 -9.84689 -9.77570 -9.31668 -8.98168 -7.95138 -5.22882 -0.84528 -0.23758 0.68332 1.45942 1.47525 1.48409 1.56841 1.78257 2.00140 2.55987 3.01934 3.21815 3.29197 3.38363 3.67035 3.72950 3.74101 3.76745 3.80703 3.88125 3.95734 4.05547 4.13930 4.27213 4.31750 4.36608 4.39562 4.44425 4.55807 4.68610 4.71472 4.73307 4.77710 4.84085 4.93305 4.96635 4.99577 5.04321 5.06272 5.14251 5.22373 5.25312 5.28429 5.45530 5.47251 5.52242 5.52905 5.75336 6.22171 6.28001 6.82403 6.92821 7.34828 8.10684 8.35225 9.28110 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013233 B = 0.002642 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.375510 B =10596.895842 C =11183.657801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.247 4.247 8 H 0.071 0.929 9 N -0.742 5.742 10 C 0.157 3.843 11 C -0.083 4.083 12 C -0.116 4.116 13 C 0.114 3.886 14 N -0.596 5.596 15 C 0.564 3.436 16 O -0.571 6.571 17 C -0.127 4.127 18 C -0.070 4.070 19 C -0.098 4.098 20 C -0.079 4.079 21 C 0.100 3.900 22 N -0.493 5.493 23 C 0.129 3.871 24 C -0.164 4.164 25 C -0.077 4.077 26 C -0.088 4.088 27 C 0.110 3.890 28 C -0.118 4.118 29 H 0.252 0.748 30 H 0.377 0.623 31 H 0.010 0.990 32 H 0.020 0.980 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.156 0.844 39 H 0.175 0.825 40 H 0.156 0.844 41 H 0.196 0.804 42 H 0.168 0.832 43 H 0.130 0.870 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.050 0.950 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.363 -21.017 8.682 23.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.385 5.385 10 C 0.030 3.970 11 C -0.102 4.102 12 C -0.154 4.154 13 C -0.008 4.008 14 N -0.327 5.327 15 C 0.353 3.647 16 O -0.452 6.452 17 C -0.131 4.131 18 C -0.088 4.088 19 C -0.117 4.117 20 C -0.097 4.097 21 C -0.021 4.021 22 N -0.202 5.202 23 C -0.043 4.043 24 C -0.184 4.184 25 C -0.103 4.103 26 C -0.091 4.091 27 C -0.012 4.012 28 C -0.156 4.156 29 H 0.060 0.940 30 H 0.209 0.791 31 H 0.028 0.972 32 H 0.038 0.962 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.173 0.827 39 H 0.192 0.808 40 H 0.174 0.826 41 H 0.213 0.787 42 H 0.186 0.814 43 H 0.147 0.853 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.068 0.932 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.558 -21.352 9.174 23.895 hybrid contribution 1.063 1.154 -0.721 1.727 sum -4.495 -20.198 8.453 22.352 Atomic orbital electron populations 1.69792 1.06379 1.26052 1.59400 1.25497 0.96420 1.00837 1.03690 0.85195 0.77696 0.79761 0.77442 1.21378 1.22056 1.19779 1.19595 0.91377 0.85573 1.41327 0.91151 1.42538 1.05700 1.00941 1.89300 1.20807 0.93906 0.85075 0.97163 1.21198 0.97096 0.93872 0.98022 1.21819 0.97649 0.92755 1.03213 1.21725 0.92552 0.99501 0.86995 1.48164 1.46178 1.12565 1.25790 1.18405 0.82028 0.82738 0.81566 1.90755 1.47695 1.33010 1.73711 1.19852 0.95619 1.05555 0.92074 1.21730 0.90872 0.94565 1.01650 1.21226 1.01615 0.97875 0.91004 1.21293 0.93313 0.96567 0.98556 1.19162 0.95005 0.99499 0.88393 1.68104 1.19748 1.12692 1.19607 1.23605 0.87356 0.91740 1.01600 1.22302 1.03027 1.00405 0.92626 1.21687 0.95109 0.95096 0.98398 1.18744 0.95278 1.01604 0.93440 1.22088 0.94284 0.81352 1.03497 1.21871 0.98104 0.98276 0.97394 0.93951 0.79052 0.97196 0.96203 0.90584 0.92429 0.89024 0.89399 0.89173 0.82662 0.80783 0.82602 0.78720 0.81442 0.85255 0.88717 0.88853 0.93153 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.79 13.06 21.65 0.28 -57.51 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 3 Si 0.97 45.75 29.55 68.60 2.03 47.77 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.25 -13.70 9.99 84.03 0.84 -12.86 16 8 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 9 N -0.74 -36.75 5.32 -343.47 -1.83 -38.58 16 10 C 0.16 6.10 5.65 86.38 0.49 6.59 16 11 C -0.08 -2.43 2.19 -10.76 -0.02 -2.46 16 12 C -0.12 -2.75 5.36 30.67 0.16 -2.59 16 13 C 0.11 2.48 6.44 86.36 0.56 3.04 16 14 N -0.60 -13.88 2.97 -821.79 -2.44 -16.31 16 15 C 0.56 14.91 6.46 86.70 0.56 15.47 16 16 O -0.57 -18.43 15.16 -4.00 -0.06 -18.49 16 17 C -0.13 -3.00 4.63 -19.89 -0.09 -3.09 16 18 C -0.07 -1.20 7.75 22.55 0.17 -1.02 16 19 C -0.10 -1.37 9.92 21.97 0.22 -1.16 16 20 C -0.08 -1.40 9.96 22.40 0.22 -1.18 16 21 C 0.10 2.35 6.60 40.27 0.27 2.61 16 22 N -0.49 -11.20 10.34 -188.68 -1.95 -13.15 16 23 C 0.13 2.28 11.15 85.07 0.95 3.23 16 24 C -0.16 -2.97 10.03 22.17 0.22 -2.75 16 25 C -0.08 -1.86 9.30 22.45 0.21 -1.65 16 26 C -0.09 -2.22 5.76 -21.10 -0.12 -2.34 16 27 C 0.11 2.40 5.61 86.51 0.49 2.89 16 28 C -0.12 -3.39 5.26 30.82 0.16 -3.23 16 29 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 30 H 0.38 19.44 6.84 -92.71 -0.63 18.81 16 31 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.09 2.04 7.00 -2.38 -0.02 2.02 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.16 1.97 7.75 -2.91 -0.02 1.94 16 39 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 40 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 41 H 0.20 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 43 H 0.13 3.38 6.50 -2.91 -0.02 3.36 16 44 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.09 1.93 5.38 -2.39 -0.01 1.91 16 46 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.07 2.24 7.15 -2.39 -0.02 2.23 16 Total: -1.00 -73.40 379.39 2.14 -71.26 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: 0.36 Total: 29.12 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 5.75 Total: -4.12 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -5.93 Total: -125.55 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.06 Total: -18.49 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -73.40 2.14 -71.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205811847.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.579 kcal (2) G-P(sol) polarization free energy of solvation -73.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds