Wall clock time and date at job start Tue Mar 31 2020 22:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 120.00130 * 2 1 4 4 H 1.48506 * 109.47112 * 240.00050 * 3 2 1 5 5 H 1.48503 * 109.47433 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47355 * 120.00157 * 3 2 1 7 7 C 1.38815 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00072 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99683 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99561 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46975 * 179.97438 * 10 9 7 12 12 C 1.53349 * 109.41783 * 295.13086 * 11 10 9 13 13 C 1.53190 * 109.15027 * 178.67356 * 12 11 10 14 14 N 1.46926 * 108.89632 * 54.57583 * 13 12 11 15 15 C 1.34771 * 120.63170 * 126.34021 * 14 13 12 16 16 O 1.21558 * 120.00193 * 354.17238 * 15 14 13 17 17 C 1.47762 * 120.00025 * 174.17329 * 15 14 13 18 18 C 1.40597 * 120.26573 * 318.75141 * 17 15 14 19 19 N 1.30800 * 121.53374 * 179.76073 * 18 17 15 20 20 C 1.33821 * 121.71949 * 0.50061 * 19 18 17 21 21 C 1.40526 * 120.80725 * 179.72849 * 20 19 18 22 22 C 1.36133 * 119.80941 * 180.02562 * 21 20 19 23 23 C 1.39335 * 121.08855 * 0.02562 * 22 21 20 24 24 C 1.36142 * 120.83634 * 359.97438 * 23 22 21 25 25 C 1.40538 * 119.61993 * 0.02562 * 24 23 22 26 26 C 1.39016 * 120.26745 * 139.02985 * 17 15 14 27 27 C 1.46933 * 118.73381 * 306.32592 * 14 13 12 28 28 C 1.53034 * 109.45990 * 175.00196 * 11 10 9 29 29 H 0.97004 * 120.00017 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00021 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47325 * 60.00242 * 10 9 7 32 32 H 1.08994 * 109.47536 * 299.99742 * 10 9 7 33 33 H 1.09005 * 109.45596 * 55.02607 * 11 10 9 34 34 H 1.09003 * 109.68505 * 58.71102 * 12 11 10 35 35 H 1.08997 * 109.47672 * 298.50886 * 12 11 10 36 36 H 1.09004 * 109.58607 * 294.71955 * 13 12 11 37 37 H 1.09001 * 109.59138 * 174.43997 * 13 12 11 38 38 H 1.08001 * 119.23321 * 0.02562 * 18 17 15 39 39 H 1.07994 * 120.09796 * 0.02601 * 21 20 19 40 40 H 1.08000 * 119.45217 * 180.02562 * 22 21 20 41 41 H 1.08004 * 119.58479 * 180.02562 * 23 22 21 42 42 H 1.08004 * 120.19389 * 179.97438 * 24 23 22 43 43 H 1.07999 * 121.01354 * 359.95835 * 26 17 15 44 44 H 1.09002 * 109.57919 * 173.38941 * 27 14 13 45 45 H 1.09001 * 109.58332 * 293.67117 * 27 14 13 46 46 H 1.08999 * 109.50150 * 61.43560 * 28 11 10 47 47 H 1.08996 * 109.49697 * 301.33430 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.0637 -4.8197 -0.0031 12 6 0.2661 -4.8090 1.3065 13 6 -0.7499 -5.9553 1.2856 14 7 -0.0413 -7.2145 1.0191 15 6 -0.1828 -8.2701 1.8448 16 8 -0.8160 -8.1546 2.8760 17 6 0.4317 -9.5681 1.4966 18 6 0.3881 -10.0404 0.1731 19 7 0.9279 -11.1833 -0.1635 20 6 1.5392 -11.9643 0.7348 21 6 2.1078 -13.1914 0.3531 22 6 2.7244 -13.9703 1.2839 23 6 2.8032 -13.5724 2.6169 24 6 2.2645 -12.3907 3.0254 25 6 1.6203 -11.5612 2.0916 26 6 1.0524 -10.3347 2.4762 27 6 0.8245 -7.3008 -0.1650 28 6 1.8249 -6.1413 -0.1300 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3881 -0.0023 31 1 2.6846 -3.7154 0.8872 32 1 2.6846 -3.7138 -0.8927 33 1 0.3797 -4.7123 -0.8450 34 1 -0.2590 -3.8593 1.4089 35 1 0.9466 -4.9415 2.1476 36 1 -1.4857 -5.7771 0.5013 37 1 -1.2524 -6.0160 2.2510 38 1 -0.0987 -9.4436 -0.5841 39 1 2.0557 -13.5157 -0.6757 40 1 3.1598 -14.9121 0.9841 41 1 3.2985 -14.2091 3.3350 42 1 2.3312 -12.0927 4.0614 43 1 1.0970 -9.9977 3.5013 44 1 1.3630 -8.2485 -0.1554 45 1 0.2168 -7.2349 -1.0675 46 1 2.4910 -6.2610 0.7245 47 1 2.4096 -6.1374 -1.0499 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206403066.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:54 Heat of formation + Delta-G solvation = 32.099763 kcal Electronic energy + Delta-G solvation = -28324.761304 eV Core-core repulsion = 24472.385483 eV Total energy + Delta-G solvation = -3852.375821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.44705 -40.08547 -37.84305 -37.29229 -35.01500 -33.87926 -32.92712 -31.69004 -30.73601 -30.51732 -30.12227 -26.88256 -25.15863 -24.60351 -23.70885 -22.97297 -22.52146 -21.91854 -20.55298 -19.49813 -18.59912 -18.10083 -17.21926 -16.94451 -16.44831 -15.86752 -15.42178 -15.04039 -14.82472 -14.61509 -14.55510 -14.27084 -14.22429 -13.83853 -13.67250 -13.58184 -13.48655 -13.22798 -12.90012 -12.46031 -12.27748 -12.22278 -12.06477 -11.88394 -11.81519 -11.21467 -11.01055 -10.93724 -10.81887 -10.57356 -10.40512 -10.29761 -10.21224 -9.99130 -9.75022 -9.64470 -9.17249 -8.86535 -8.77128 -8.66084 -6.91387 -5.76368 -3.04624 -0.13712 0.22814 1.48167 2.21423 2.65816 2.89227 3.44245 3.48615 3.49633 3.65814 3.79855 4.09288 4.17084 4.35708 4.37704 4.52292 4.58224 4.68388 4.73080 4.79688 4.94866 4.99840 5.02422 5.20141 5.30211 5.31384 5.40618 5.45035 5.47939 5.55290 5.60119 5.60269 5.76521 5.85229 5.90112 5.95560 5.96981 6.03840 6.08432 6.14742 6.27054 6.33591 6.35423 6.48003 6.66660 6.78712 6.90549 7.22491 7.43151 7.69849 7.94055 8.42906 9.53928 10.12067 10.46659 11.46461 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024950 B = 0.002017 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.996472 B =13879.774721 C =14178.500059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.094 4.094 12 C -0.123 4.123 13 C 0.110 3.890 14 N -0.599 5.599 15 C 0.564 3.436 16 O -0.535 6.535 17 C -0.184 4.184 18 C 0.161 3.839 19 N -0.474 5.474 20 C 0.138 3.862 21 C -0.097 4.097 22 C -0.093 4.093 23 C -0.120 4.120 24 C -0.087 4.087 25 C -0.110 4.110 26 C 0.003 3.997 27 C 0.099 3.901 28 C -0.126 4.126 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.017 0.983 32 H 0.018 0.982 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.167 0.833 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.149 0.851 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.066 0.934 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.469 -29.755 2.232 30.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.113 4.113 12 C -0.162 4.162 13 C -0.011 4.011 14 N -0.332 5.332 15 C 0.351 3.649 16 O -0.413 6.413 17 C -0.189 4.189 18 C -0.013 4.013 19 N -0.182 5.182 20 C 0.018 3.982 21 C -0.116 4.116 22 C -0.113 4.113 23 C -0.138 4.138 24 C -0.105 4.105 25 C -0.112 4.112 26 C -0.024 4.024 27 C -0.024 4.024 28 C -0.165 4.165 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.184 0.816 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.167 0.833 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.271 -29.932 1.919 30.171 hybrid contribution 0.272 1.348 0.773 1.577 sum 3.543 -28.584 2.692 28.928 Atomic orbital electron populations 1.69640 1.05070 1.25753 1.57781 1.24733 0.95540 0.97671 1.03085 0.86267 0.78517 0.83570 0.77818 1.21316 1.21692 1.21311 1.19181 0.90983 0.84237 1.42671 0.91338 1.42363 1.05824 0.99944 1.89469 1.20658 0.93143 0.85424 0.97696 1.21373 0.97861 0.94206 0.97884 1.21975 0.98006 0.98258 0.97923 1.21790 0.94629 0.81826 1.02858 1.48070 1.46316 1.12800 1.25983 1.18029 0.80367 0.83245 0.83277 1.90796 1.42002 1.84083 1.24375 1.20945 1.04516 0.97533 0.95900 1.23213 0.93043 0.91595 0.93442 1.68002 1.09487 1.04828 1.35857 1.19016 0.95695 0.94762 0.88764 1.20845 0.97632 0.92379 1.00705 1.20999 0.97606 0.99721 0.93004 1.20964 0.99810 0.96706 0.96308 1.21081 0.96339 0.94019 0.99105 1.18804 1.01494 0.95968 0.94901 1.21880 0.90079 0.90832 0.99567 1.22106 0.92722 0.99931 0.87597 1.21908 0.97595 0.94101 1.02867 0.93477 0.78235 0.96490 0.96400 0.90831 0.89203 0.91824 0.91011 0.88995 0.81576 0.84429 0.85053 0.85220 0.84851 0.83331 0.89821 0.90576 0.91505 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.69 9.99 -15.05 -0.15 -6.84 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -18.17 5.32 -59.91 -0.32 -18.49 16 10 C 0.16 3.09 5.65 -4.04 -0.02 3.07 16 11 C -0.09 -1.42 2.19 -90.42 -0.20 -1.61 16 12 C -0.12 -1.87 5.27 -26.45 -0.14 -2.01 16 13 C 0.11 1.46 6.43 -3.71 -0.02 1.43 16 14 N -0.60 -7.25 2.97 -173.91 -0.52 -7.77 16 15 C 0.56 7.42 7.32 -12.37 -0.09 7.33 16 16 O -0.53 -8.79 16.36 5.32 0.09 -8.71 16 17 C -0.18 -2.03 5.09 -104.83 -0.53 -2.57 16 18 C 0.16 1.62 8.54 -17.10 -0.15 1.47 16 19 N -0.47 -5.15 10.30 -10.67 -0.11 -5.26 16 20 C 0.14 1.41 6.61 -84.79 -0.56 0.85 16 21 C -0.10 -0.77 9.97 -39.48 -0.39 -1.16 16 22 C -0.09 -0.56 9.94 -39.93 -0.40 -0.95 16 23 C -0.12 -0.70 9.96 -39.93 -0.40 -1.10 16 24 C -0.09 -0.62 9.77 -39.47 -0.39 -1.00 16 25 C -0.11 -1.04 5.74 -106.82 -0.61 -1.66 16 26 C 0.00 0.03 9.54 -38.43 -0.37 -0.34 16 27 C 0.10 0.99 4.91 -3.71 -0.02 0.97 16 28 C -0.13 -1.48 5.36 -26.61 -0.14 -1.62 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.38 9.91 6.85 -40.82 -0.28 9.63 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.57 7.16 -51.93 -0.37 1.19 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.30 7.00 -51.93 -0.36 0.94 16 38 H 0.17 1.35 6.66 -52.49 -0.35 1.00 16 39 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 42 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 43 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 44 H 0.08 0.75 4.79 -51.93 -0.25 0.50 16 45 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -33.72 380.68 -10.75 -44.47 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.65 Total: 6.18 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -4.68 Total: -6.24 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.22 Total: -58.84 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.72 -10.75 -44.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206403066.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.574 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds