Wall clock time and date at job start Tue Mar 31 2020 22:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 119.99809 * 2 1 4 4 H 1.48491 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46980 * 300.00420 * 3 2 1 6 6 H 1.48500 * 109.46844 * 59.99994 * 3 2 1 7 7 C 1.38807 * 120.00434 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00101 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99800 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47074 * 179.97438 * 10 9 7 12 12 C 1.53039 * 109.45947 * 175.00338 * 11 10 9 13 13 C 1.53194 * 109.30954 * 181.38605 * 12 11 10 14 14 N 1.46922 * 108.77746 * 305.36830 * 13 12 11 15 15 C 1.34786 * 120.62629 * 233.58647 * 14 13 12 16 16 O 1.21544 * 120.00037 * 5.85905 * 15 14 13 17 17 C 1.47877 * 119.99697 * 185.86131 * 15 14 13 18 18 C 1.40579 * 119.71096 * 222.17491 * 17 15 14 19 19 C 1.35807 * 120.74623 * 180.02562 * 18 17 15 20 20 C 1.40553 * 119.98257 * 359.97438 * 19 18 17 21 21 C 1.40818 * 121.14640 * 179.97438 * 20 19 18 22 22 C 1.36558 * 118.19712 * 179.97438 * 21 20 19 23 23 C 1.39419 * 119.94144 * 0.02562 * 22 21 20 24 24 N 1.31012 * 121.71120 * 0.02562 * 23 22 21 25 25 C 1.33751 * 121.35258 * 359.72391 * 24 23 22 26 26 C 1.38407 * 119.71378 * 42.19291 * 17 15 14 27 27 C 1.46920 * 118.74037 * 53.85528 * 14 13 12 28 28 C 1.53038 * 109.46007 * 295.07241 * 11 10 9 29 29 H 0.96995 * 120.00512 * 359.97438 * 1 2 3 30 30 H 0.96994 * 120.00199 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.46900 * 60.00530 * 10 9 7 32 32 H 1.08998 * 109.47830 * 300.00181 * 10 9 7 33 33 H 1.08996 * 109.45574 * 55.03032 * 11 10 9 34 34 H 1.08993 * 109.49843 * 61.43552 * 12 11 10 35 35 H 1.08998 * 109.49898 * 301.33668 * 12 11 10 36 36 H 1.08999 * 109.58506 * 185.57542 * 13 12 11 37 37 H 1.09009 * 109.70242 * 65.22380 * 13 12 11 38 38 H 1.08006 * 119.62685 * 359.97438 * 18 17 15 39 39 H 1.08002 * 120.01007 * 179.97438 * 19 18 17 40 40 H 1.07997 * 120.90237 * 359.97438 * 21 20 19 41 41 H 1.07998 * 120.02714 * 180.02562 * 22 21 20 42 42 H 1.08006 * 119.14071 * 179.97438 * 23 22 21 43 43 H 1.08000 * 120.23048 * 0.02562 * 26 17 15 44 44 H 1.08998 * 109.58614 * 65.93550 * 27 14 13 45 45 H 1.09008 * 109.58663 * 186.35286 * 27 14 13 46 46 H 1.08997 * 109.49674 * 298.56389 * 28 11 10 47 47 H 1.09006 * 109.50164 * 58.66049 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7100 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 6 1.0641 -4.8197 -0.0008 12 6 1.8254 -6.1413 -0.1276 13 6 0.8250 -7.3009 -0.1612 14 7 -0.0398 -7.2140 1.0233 15 6 -0.1807 -8.2695 1.8496 16 8 0.4907 -9.2683 1.6795 17 6 -1.1520 -8.2122 2.9632 18 6 -0.7952 -8.7169 4.2257 19 6 -1.6709 -8.6755 5.2629 20 6 -2.9503 -8.1229 5.0803 21 6 -3.8778 -8.0679 6.1384 22 6 -5.1035 -7.5177 5.8942 23 6 -5.4068 -7.0304 4.6236 24 7 -4.5420 -7.0840 3.6410 25 6 -3.3227 -7.6056 3.8146 26 6 -2.4048 -7.6625 2.7531 27 6 -0.7528 -5.9567 1.2867 28 6 0.2696 -4.8103 1.3071 29 1 -0.4851 0.8400 0.0004 30 1 0.3557 -2.3881 0.0002 31 1 2.6856 -3.7147 0.8879 32 1 2.6843 -3.7140 -0.8921 33 1 0.3795 -4.7128 -0.8421 34 1 2.4920 -6.2605 0.7264 35 1 2.4094 -6.1378 -1.0479 36 1 1.3636 -8.2485 -0.1517 37 1 0.2166 -7.2355 -1.0634 38 1 0.1863 -9.1432 4.3724 39 1 -1.3844 -9.0670 6.2278 40 1 -3.6265 -8.4505 7.1166 41 1 -5.8373 -7.4602 6.6845 42 1 -6.3804 -6.5983 4.4447 43 1 -2.6733 -7.2770 1.7807 44 1 -1.4869 -5.7813 0.5004 45 1 -1.2557 -6.0170 2.2520 46 1 0.9509 -4.9421 2.1477 47 1 -0.2538 -3.8594 1.4081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206628426.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:26 Heat of formation + Delta-G solvation = 32.691698 kcal Electronic energy + Delta-G solvation = -28613.374489 eV Core-core repulsion = 24761.024336 eV Total energy + Delta-G solvation = -3852.350153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.32141 -40.17242 -37.89220 -36.93686 -35.00357 -33.94806 -32.87701 -31.53480 -30.79358 -30.33153 -30.09490 -26.88519 -25.18105 -24.30374 -23.55521 -23.32400 -22.40509 -21.84358 -20.53967 -19.54993 -18.28645 -17.65543 -17.29851 -17.06274 -16.37964 -15.90209 -15.35629 -14.97547 -14.76429 -14.61677 -14.49928 -14.25703 -14.16414 -13.77811 -13.67366 -13.48162 -13.39422 -13.19393 -12.82306 -12.48872 -12.24440 -12.19230 -11.99362 -11.88908 -11.75169 -11.16581 -11.00217 -10.89050 -10.85005 -10.40229 -10.34723 -10.29477 -10.01983 -9.93939 -9.79254 -9.64730 -9.13146 -8.87250 -8.68579 -8.56311 -6.90718 -5.76372 -3.04435 -0.06961 0.35520 1.55408 2.23740 2.74723 2.97712 3.43316 3.49204 3.51262 3.74270 3.88650 4.16939 4.28269 4.40988 4.51207 4.59234 4.64952 4.71911 4.86749 4.92359 5.02182 5.08505 5.11186 5.18058 5.33149 5.38353 5.46501 5.52128 5.53325 5.56214 5.63545 5.69487 5.79109 5.87838 5.94425 5.96690 6.01817 6.10460 6.12194 6.19519 6.28322 6.38227 6.44588 6.47683 6.63461 6.81114 6.92668 7.28041 7.55635 7.71250 7.99052 8.42927 9.54165 10.12379 10.47108 11.46647 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011285 B = 0.002706 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.572381 B =10346.223943 C =12125.417795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.094 4.094 12 C -0.125 4.125 13 C 0.113 3.887 14 N -0.599 5.599 15 C 0.559 3.441 16 O -0.539 6.539 17 C -0.103 4.103 18 C -0.072 4.072 19 C -0.100 4.100 20 C -0.089 4.089 21 C -0.061 4.061 22 C -0.169 4.169 23 C 0.131 3.869 24 N -0.466 5.466 25 C 0.119 3.881 26 C -0.054 4.054 27 C 0.095 3.905 28 C -0.124 4.124 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.162 0.838 43 H 0.147 0.853 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.146 -20.261 11.368 24.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.113 4.113 12 C -0.164 4.164 13 C -0.009 4.009 14 N -0.331 5.331 15 C 0.347 3.653 16 O -0.417 6.417 17 C -0.108 4.108 18 C -0.090 4.090 19 C -0.119 4.119 20 C -0.092 4.092 21 C -0.087 4.087 22 C -0.189 4.189 23 C -0.042 4.042 24 N -0.173 5.173 25 C -0.002 4.002 26 C -0.073 4.073 27 C -0.027 4.027 28 C -0.162 4.162 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.179 0.821 43 H 0.164 0.836 44 H 0.093 0.907 45 H 0.106 0.894 46 H 0.082 0.918 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.744 -20.360 10.359 24.460 hybrid contribution 0.260 0.834 0.894 1.250 sum -8.484 -19.526 11.253 24.081 Atomic orbital electron populations 1.69657 1.05064 1.25495 1.58040 1.24725 0.95527 0.97644 1.03163 0.86131 0.78796 0.84201 0.77173 1.20604 1.21890 1.21894 1.19277 0.91055 0.84219 1.42296 0.91230 1.42384 1.05829 0.99994 1.89441 1.20668 0.93154 0.85367 0.97746 1.21319 0.97883 0.94446 0.97687 1.21906 0.97711 0.93981 1.02805 1.21686 0.92536 1.00315 0.86383 1.48090 1.46444 1.12755 1.25817 1.18265 0.82293 0.83109 0.81598 1.90769 1.46267 1.31885 1.72772 1.19910 0.94673 1.01230 0.95021 1.20842 1.00398 0.96874 0.90922 1.20888 0.92059 0.99392 0.99552 1.18956 0.95707 0.99927 0.94562 1.21514 0.92824 0.95899 0.98420 1.21977 0.97942 1.00068 0.98946 1.23039 0.98543 0.94206 0.88437 1.68046 1.01541 1.14186 1.33576 1.18718 0.91952 0.97297 0.92221 1.21383 0.91304 0.95662 0.98942 1.22323 0.95143 0.82963 1.02305 1.22000 0.97868 0.98103 0.98219 0.93598 0.78266 0.96452 0.96333 0.90896 0.91509 0.90510 0.89066 0.91180 0.84556 0.84564 0.84174 0.84298 0.82082 0.83584 0.90696 0.89354 0.91750 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.73 -18.29 5.32 -59.90 -0.32 -18.61 16 10 C 0.16 3.14 5.65 -4.04 -0.02 3.12 16 11 C -0.09 -1.47 2.19 -90.58 -0.20 -1.67 16 12 C -0.13 -1.63 5.36 -26.61 -0.14 -1.77 16 13 C 0.11 1.38 6.44 -3.71 -0.02 1.36 16 14 N -0.60 -7.73 2.97 -173.61 -0.51 -8.24 16 15 C 0.56 7.76 7.28 -12.31 -0.09 7.67 16 16 O -0.54 -8.90 16.36 5.33 0.09 -8.81 16 17 C -0.10 -1.25 5.07 -105.01 -0.53 -1.78 16 18 C -0.07 -0.75 9.54 -39.57 -0.38 -1.13 16 19 C -0.10 -0.88 9.74 -39.58 -0.39 -1.26 16 20 C -0.09 -0.87 5.75 -106.72 -0.61 -1.49 16 21 C -0.06 -0.44 9.89 -39.21 -0.39 -0.82 16 22 C -0.17 -1.11 10.03 -39.75 -0.40 -1.50 16 23 C 0.13 1.09 11.15 -17.46 -0.19 0.89 16 24 N -0.47 -5.34 10.34 -10.98 -0.11 -5.46 16 25 C 0.12 1.38 6.60 -84.87 -0.56 0.82 16 26 C -0.05 -0.63 7.34 -38.69 -0.28 -0.91 16 27 C 0.09 1.19 4.95 -3.49 -0.02 1.17 16 28 C -0.12 -1.86 5.26 -26.39 -0.14 -2.00 16 29 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.38 9.94 6.84 -40.82 -0.28 9.67 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.16 7.00 -51.93 -0.36 0.79 16 37 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.14 1.32 8.06 -52.48 -0.42 0.89 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 42 H 0.16 0.86 8.06 -52.48 -0.42 0.43 16 43 H 0.15 1.63 6.73 -52.49 -0.35 1.27 16 44 H 0.07 0.88 8.13 -51.93 -0.42 0.45 16 45 H 0.09 1.06 4.83 -51.92 -0.25 0.81 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.09 1.54 7.15 -51.93 -0.37 1.17 16 LS Contribution 380.74 15.07 5.74 5.74 Total: -1.00 -34.13 380.74 -10.69 -44.82 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.66 Total: 7.08 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -4.61 Total: -6.62 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.22 Total: -59.64 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.13 -10.69 -44.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206628426.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.512 kcal (2) G-P(sol) polarization free energy of solvation -34.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds