Wall clock time and date at job start Tue Mar 31 2020 22:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99946 * 2 1 4 4 H 1.48503 * 109.47079 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47419 * 300.00711 * 3 2 1 6 6 H 1.48502 * 109.46723 * 60.00411 * 3 2 1 7 7 C 1.38810 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99620 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00462 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00081 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46961 * 179.97438 * 10 9 7 12 12 C 1.53040 * 109.45789 * 184.99922 * 11 10 9 13 13 C 1.53193 * 109.31207 * 178.61424 * 12 11 10 14 14 N 1.46923 * 108.77316 * 54.63459 * 13 12 11 15 15 C 1.34784 * 120.62940 * 126.11972 * 14 13 12 16 16 O 1.21580 * 119.99853 * 354.28418 * 15 14 13 17 17 C 1.47565 * 119.99806 * 174.28567 * 15 14 13 18 18 C 1.38706 * 120.43422 * 305.90626 * 17 15 14 19 19 C 1.39000 * 120.74819 * 179.68363 * 18 17 15 20 20 C 1.36339 * 121.19307 * 0.64880 * 19 18 17 21 21 C 1.40352 * 119.92870 * 359.65770 * 20 19 18 22 22 C 1.40688 * 122.10323 * 180.02562 * 21 20 19 23 23 C 1.36262 * 118.66655 * 179.97438 * 22 21 20 24 24 N 1.32504 * 121.84042 * 359.97438 * 23 22 21 25 25 C 1.31316 * 122.72123 * 359.97438 * 24 23 22 26 26 C 1.40128 * 119.91853 * 0.02562 * 25 24 23 27 27 C 1.46925 * 118.74046 * 306.39187 * 14 13 12 28 28 C 1.53043 * 109.46092 * 64.93210 * 11 10 9 29 29 H 0.96992 * 120.00133 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99445 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.47047 * 59.99690 * 10 9 7 32 32 H 1.08998 * 109.46868 * 300.00255 * 10 9 7 33 33 H 1.09000 * 109.44702 * 304.96385 * 11 10 9 34 34 H 1.09004 * 109.49696 * 58.66431 * 12 11 10 35 35 H 1.09001 * 109.49761 * 298.56465 * 12 11 10 36 36 H 1.09001 * 109.58638 * 294.85169 * 13 12 11 37 37 H 1.08996 * 109.70447 * 174.49213 * 13 12 11 38 38 H 1.07996 * 119.62398 * 0.02562 * 18 17 15 39 39 H 1.08008 * 119.40253 * 180.30746 * 19 18 17 40 40 H 1.08003 * 120.03582 * 179.67892 * 20 19 18 41 41 H 1.08003 * 120.66603 * 359.95775 * 22 21 20 42 42 H 1.07999 * 119.07996 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.03946 * 179.97438 * 25 24 23 44 44 H 1.09006 * 109.58828 * 173.39944 * 27 14 13 45 45 H 1.09004 * 109.58550 * 293.81809 * 27 14 13 46 46 H 1.09002 * 109.49509 * 301.34046 * 28 11 10 47 47 H 1.08998 * 109.49423 * 61.43040 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6569 -0.0005 11 6 1.0639 -4.8198 0.0001 12 6 1.8252 -6.1414 0.1259 13 6 0.8248 -7.3010 0.1610 14 7 -0.0417 -7.2140 -1.0223 15 6 -0.1792 -8.2675 -1.8517 16 8 0.4947 -9.2654 -1.6837 17 6 -1.1477 -8.2097 -2.9635 18 6 -2.4777 -7.8990 -2.7214 19 6 -3.3941 -7.8363 -3.7646 20 6 -3.0187 -8.0899 -5.0505 21 6 -1.6841 -8.4143 -5.3393 22 6 -1.2468 -8.6839 -6.6491 23 6 0.0655 -8.9911 -6.8498 24 7 0.9327 -9.0411 -5.8492 25 6 0.5940 -8.8002 -4.6036 26 6 -0.7325 -8.4748 -4.2905 27 6 -0.7507 -5.9548 -1.2877 28 6 0.2673 -4.8103 -1.3067 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 0.0002 31 1 2.6848 -3.7145 0.8894 32 1 2.6848 -3.7145 -0.8905 33 1 0.3807 -4.7127 0.8427 34 1 2.4106 -6.1379 1.0453 35 1 2.4906 -6.2607 -0.7292 36 1 0.2181 -7.2329 1.0640 37 1 1.3615 -8.2497 0.1520 38 1 -2.8036 -7.6981 -1.7116 39 1 -4.4234 -7.5875 -3.5519 40 1 -3.7475 -8.0410 -5.8461 41 1 -1.9374 -8.6483 -7.4787 42 1 0.4083 -9.1996 -7.8525 43 1 1.3367 -8.8536 -3.8213 44 1 -1.2517 -6.0142 -2.2540 45 1 -1.4859 -5.7770 -0.5029 46 1 -0.2560 -3.8594 -1.4068 47 1 0.9474 -4.9421 -2.1482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206754362.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:41 Heat of formation + Delta-G solvation = 29.307621 kcal Electronic energy + Delta-G solvation = -28963.709357 eV Core-core repulsion = 25111.212460 eV Total energy + Delta-G solvation = -3852.496898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.42868 -40.01391 -37.85106 -37.43732 -34.99335 -33.49785 -32.77849 -31.56227 -31.24139 -30.38287 -29.86381 -26.86915 -24.96474 -24.12507 -23.92929 -23.24555 -23.07830 -21.60174 -20.36087 -19.32290 -18.40369 -17.67680 -17.19428 -17.06633 -16.55967 -16.10773 -15.29470 -14.98112 -14.81866 -14.72272 -14.44929 -14.26929 -14.13095 -13.93368 -13.71472 -13.62821 -13.27982 -12.95868 -12.86422 -12.50617 -12.33313 -12.28911 -12.23307 -11.83827 -11.82304 -11.19031 -11.01766 -10.86937 -10.53576 -10.43486 -10.38278 -10.32472 -10.01579 -9.92839 -9.71979 -9.67179 -9.46664 -8.89282 -8.74392 -8.37857 -6.93073 -5.78917 -3.06807 -0.13411 0.55887 1.38771 2.38302 2.65700 2.89681 3.41926 3.48101 3.49960 3.75465 4.03744 4.18289 4.32422 4.40273 4.48867 4.57353 4.60119 4.75257 4.81712 4.94151 4.98679 5.03844 5.12255 5.22815 5.31407 5.33375 5.40675 5.46231 5.52552 5.56501 5.60226 5.66666 5.74596 5.85212 5.91151 5.92196 5.99282 6.06051 6.16393 6.24803 6.26213 6.38036 6.40890 6.44181 6.59336 6.78154 6.89908 7.20719 7.69485 7.72164 7.90862 8.40634 9.51936 10.09759 10.44459 11.44187 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013221 B = 0.002640 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.320216 B =10602.478708 C =11177.264897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.094 4.094 12 C -0.126 4.126 13 C 0.112 3.888 14 N -0.597 5.597 15 C 0.560 3.440 16 O -0.535 6.535 17 C -0.088 4.088 18 C -0.082 4.082 19 C -0.101 4.101 20 C -0.094 4.094 21 C -0.026 4.026 22 C -0.157 4.157 23 C 0.078 3.922 24 N -0.485 5.485 25 C 0.157 3.843 26 C -0.081 4.081 27 C 0.101 3.899 28 C -0.125 4.125 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.019 0.981 32 H 0.018 0.982 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.155 0.845 43 H 0.167 0.833 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.155 -19.947 -8.936 23.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.030 3.970 11 C -0.113 4.113 12 C -0.165 4.165 13 C -0.010 4.010 14 N -0.329 5.329 15 C 0.347 3.653 16 O -0.413 6.413 17 C -0.093 4.093 18 C -0.101 4.101 19 C -0.120 4.120 20 C -0.112 4.112 21 C -0.031 4.031 22 C -0.177 4.177 23 C -0.065 4.065 24 N -0.193 5.193 25 C -0.014 4.014 26 C -0.084 4.084 27 C -0.022 4.022 28 C -0.163 4.163 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.158 0.842 42 H 0.172 0.828 43 H 0.184 0.816 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.108 0.892 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.804 -20.573 -9.178 23.533 hybrid contribution -0.859 1.359 0.177 1.618 sum -7.663 -19.214 -9.002 22.559 Atomic orbital electron populations 1.69659 1.05074 1.25497 1.58121 1.24723 0.95538 0.97658 1.03144 0.86127 0.78829 0.84148 0.77172 1.20573 1.21889 1.21887 1.19284 0.91078 0.84211 1.42237 0.91211 1.42379 1.05802 1.00001 1.89460 1.20668 0.93158 0.85338 0.97802 1.21315 0.97878 0.94481 0.97613 1.21918 0.97736 0.93939 1.02909 1.21703 0.92520 1.00394 0.86357 1.48126 1.46437 1.12680 1.25704 1.18171 0.82341 0.83241 0.81519 1.90802 1.45844 1.31839 1.72814 1.19854 0.94738 1.02068 0.92670 1.21398 0.91776 0.96667 1.00270 1.20928 1.00128 0.98563 0.92359 1.21134 0.94432 0.98148 0.97488 1.18120 0.93782 0.98072 0.93135 1.21917 0.97855 1.01790 0.96118 1.22284 0.89763 0.96167 0.98313 1.67520 1.38152 1.13403 1.00196 1.23360 0.93462 0.90883 0.93735 1.18731 0.95539 1.01662 0.92458 1.22040 0.95138 0.82905 1.02080 1.21926 0.97968 0.98090 0.98310 0.93613 0.78301 0.96317 0.96398 0.90900 0.90448 0.91448 0.91143 0.88959 0.84658 0.84620 0.84617 0.84191 0.82811 0.81603 0.89767 0.90800 0.89204 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -17.98 5.32 -59.91 -0.32 -18.30 16 10 C 0.16 3.08 5.65 -4.04 -0.02 3.05 16 11 C -0.09 -1.40 2.19 -90.58 -0.20 -1.60 16 12 C -0.13 -1.57 5.36 -26.61 -0.14 -1.72 16 13 C 0.11 1.29 6.44 -3.71 -0.02 1.26 16 14 N -0.60 -7.13 2.97 -173.99 -0.52 -7.65 16 15 C 0.56 7.32 6.49 -12.45 -0.08 7.23 16 16 O -0.53 -8.41 15.18 5.30 0.08 -8.33 16 17 C -0.09 -1.02 4.62 -104.66 -0.48 -1.50 16 18 C -0.08 -0.74 7.77 -39.13 -0.30 -1.04 16 19 C -0.10 -0.74 9.93 -39.98 -0.40 -1.13 16 20 C -0.09 -0.72 9.79 -39.47 -0.39 -1.11 16 21 C -0.03 -0.26 5.74 -106.84 -0.61 -0.88 16 22 C -0.16 -1.37 9.88 -39.37 -0.39 -1.76 16 23 C 0.08 0.78 11.07 -17.97 -0.20 0.58 16 24 N -0.48 -6.27 10.30 -13.22 -0.14 -6.41 16 25 C 0.16 2.06 10.49 -17.06 -0.18 1.88 16 26 C -0.08 -0.98 5.76 -106.59 -0.61 -1.60 16 27 C 0.10 1.14 5.59 -3.72 -0.02 1.12 16 28 C -0.12 -1.78 5.25 -26.61 -0.14 -1.92 16 29 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.38 9.72 6.84 -40.82 -0.28 9.44 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.10 6.99 -51.93 -0.36 0.74 16 38 H 0.14 0.99 7.76 -52.49 -0.41 0.59 16 39 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 40 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 41 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 42 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.17 2.26 6.49 -52.49 -0.34 1.92 16 44 H 0.08 0.89 5.40 -51.93 -0.28 0.61 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.47 7.15 -51.93 -0.37 1.10 16 47 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 379.36 15.07 5.72 5.72 Total: -1.00 -33.42 379.36 -10.58 -43.99 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.66 Total: 7.07 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -4.44 Total: -6.36 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.25 Total: -59.34 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.08 Total: -8.33 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.42 -10.58 -43.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206754362.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.299 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds