Wall clock time and date at job start Tue Mar 31 2020 22:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99674 * 2 1 4 4 H 1.48494 * 109.47289 * 269.99874 * 3 2 1 5 5 H 1.48501 * 109.47149 * 30.00459 * 3 2 1 6 6 H 1.48509 * 109.46649 * 150.00172 * 3 2 1 7 7 C 1.38807 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00554 * 359.97438 * 7 2 1 9 9 N 1.36949 * 119.99676 * 179.97438 * 7 2 1 10 10 C 1.46494 * 119.99697 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46790 * 179.97438 * 10 9 7 12 12 C 1.53046 * 109.46152 * 184.99777 * 11 10 9 13 13 C 1.53191 * 109.31465 * 178.61275 * 12 11 10 14 14 N 1.46929 * 108.77177 * 54.64027 * 13 12 11 15 15 C 1.34771 * 120.63041 * 126.37178 * 14 13 12 16 16 O 1.21600 * 120.00067 * 4.20432 * 15 14 13 17 17 C 1.47457 * 120.00107 * 184.20830 * 15 14 13 18 18 C 1.38861 * 120.45650 * 305.41492 * 17 15 14 19 19 C 1.38894 * 120.67452 * 180.25751 * 18 17 15 20 20 C 1.36374 * 121.27406 * 359.48304 * 19 18 17 21 21 C 1.40397 * 119.98242 * 0.25224 * 20 19 18 22 22 C 1.40468 * 121.95174 * 180.02562 * 21 20 19 23 23 N 1.31282 * 119.88313 * 179.97438 * 22 21 20 24 24 C 1.32551 * 122.73299 * 0.02562 * 23 22 21 25 25 C 1.36337 * 121.81889 * 359.97438 * 24 23 22 26 26 C 1.40294 * 118.70208 * 0.02562 * 25 24 23 27 27 C 1.46924 * 118.73835 * 306.63971 * 14 13 12 28 28 C 1.52765 * 109.00872 * 53.31022 * 27 14 13 29 29 H 0.97001 * 120.00423 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99834 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47365 * 60.00312 * 10 9 7 32 32 H 1.09003 * 109.47346 * 299.99783 * 10 9 7 33 33 H 1.08995 * 109.45141 * 304.96705 * 11 10 9 34 34 H 1.09006 * 109.49498 * 58.66414 * 12 11 10 35 35 H 1.09003 * 109.50020 * 298.56977 * 12 11 10 36 36 H 1.08994 * 109.58558 * 294.84980 * 13 12 11 37 37 H 1.09002 * 109.70007 * 174.49288 * 13 12 11 38 38 H 1.08003 * 119.66488 * 359.97438 * 18 17 15 39 39 H 1.08010 * 119.36574 * 179.75830 * 19 18 17 40 40 H 1.08003 * 120.00758 * 180.23354 * 20 19 18 41 41 H 1.08001 * 120.06110 * 359.95764 * 22 21 20 42 42 H 1.07993 * 119.09092 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.64915 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.58970 * 173.15074 * 27 14 13 45 45 H 1.09008 * 109.58725 * 293.57626 * 27 14 13 46 46 H 1.09002 * 109.56223 * 185.55469 * 28 27 14 47 47 H 1.08997 * 109.35345 * 65.49870 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.6164 -2.1912 -0.0024 12 6 6.3803 -3.5113 -0.1281 13 6 7.8847 -3.2248 -0.1639 14 7 8.2431 -2.4306 1.0192 15 6 9.2279 -2.8354 1.8454 16 8 9.8803 -3.8251 1.5746 17 6 9.5142 -2.0782 3.0779 18 6 9.7807 -0.7165 3.0215 19 6 10.0562 0.0001 4.1789 20 6 10.0633 -0.6047 5.4012 21 6 9.7939 -1.9786 5.5058 22 6 9.7899 -2.6432 6.7433 23 7 9.5322 -3.9295 6.7941 24 6 9.2698 -4.6511 5.7136 25 6 9.2500 -4.0984 4.4675 26 6 9.5163 -2.7275 4.3341 27 6 7.5034 -1.1899 1.2877 28 6 6.0069 -1.4964 1.3041 29 1 -0.4851 0.8400 0.0004 30 1 3.8646 -0.3620 -0.0014 31 1 3.8485 -3.0425 -0.8908 32 1 3.8492 -3.0422 0.8892 33 1 5.8649 -1.5461 -0.8451 34 1 6.0843 -4.0168 -1.0473 35 1 6.1513 -4.1471 0.7272 36 1 8.1287 -2.6655 -1.0671 37 1 8.4380 -4.1639 -0.1549 38 1 9.7783 -0.2104 2.0674 39 1 10.2644 1.0577 4.1102 40 1 10.2765 -0.0269 6.2885 41 1 9.9988 -2.0972 7.6514 42 1 9.0652 -5.7058 5.8235 43 1 9.0335 -4.7041 3.5999 44 1 7.8033 -0.7877 2.2554 45 1 7.7157 -0.4612 0.5052 46 1 5.4452 -0.5676 1.4042 47 1 5.7815 -2.1511 2.1459 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206929802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:26 Heat of formation + Delta-G solvation = 12.791465 kcal Electronic energy + Delta-G solvation = -29115.733093 eV Core-core repulsion = 25262.520002 eV Total energy + Delta-G solvation = -3853.213092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.23970 -40.98200 -39.06097 -38.19264 -36.72639 -34.62488 -34.05454 -32.95774 -32.33501 -31.92782 -30.76368 -28.56224 -26.00687 -25.24875 -24.77665 -24.22731 -24.21613 -22.84649 -21.62780 -20.36932 -19.68097 -19.21120 -18.47886 -17.81326 -17.63096 -16.91169 -16.60483 -16.29803 -15.98409 -15.86853 -15.52104 -15.45113 -15.22985 -15.03559 -14.81397 -14.79132 -14.48801 -14.28585 -14.08385 -13.74490 -13.62636 -13.34914 -13.18233 -13.02551 -12.88596 -12.79264 -12.52473 -12.23801 -12.17067 -11.89438 -11.70234 -11.59178 -11.45447 -11.29133 -11.01024 -10.94235 -10.55000 -10.11546 -9.78984 -9.30081 -9.12352 -8.02661 -5.37029 -0.84286 -0.17869 0.63914 1.37240 1.43707 1.45703 1.50968 1.82956 2.06697 2.49612 2.99959 3.22952 3.28464 3.44292 3.53148 3.59968 3.72861 3.73197 3.79089 3.83925 3.89696 4.00585 4.11518 4.16528 4.28665 4.33624 4.35122 4.48034 4.51917 4.65142 4.68896 4.69800 4.74251 4.80602 4.87225 4.88688 4.96773 5.03215 5.04701 5.09133 5.19157 5.23770 5.31482 5.44335 5.48648 5.57152 5.74892 5.75063 6.20811 6.22338 6.91018 6.94062 7.08159 7.83021 8.04658 9.19193 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.002916 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.961939 B = 9600.339410 C =10177.155738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.068 4.068 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.242 1.242 7 C -0.239 4.239 8 H 0.049 0.951 9 N -0.753 5.753 10 C 0.160 3.840 11 C -0.087 4.087 12 C -0.117 4.117 13 C 0.115 3.885 14 N -0.597 5.597 15 C 0.562 3.438 16 O -0.574 6.574 17 C -0.152 4.152 18 C -0.050 4.050 19 C -0.127 4.127 20 C -0.050 4.050 21 C -0.133 4.133 22 C 0.155 3.845 23 N -0.515 5.515 24 C 0.075 3.925 25 C -0.173 4.173 26 C -0.009 4.009 27 C 0.102 3.898 28 C -0.125 4.125 29 H 0.258 0.742 30 H 0.369 0.631 31 H 0.024 0.976 32 H 0.013 0.987 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.154 0.846 39 H 0.173 0.827 40 H 0.179 0.821 41 H 0.204 0.796 42 H 0.166 0.834 43 H 0.124 0.876 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.074 0.926 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.724 1.520 9.733 29.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.259 4.259 3 Si 0.786 3.214 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.166 1.166 7 C -0.370 4.370 8 H 0.067 0.933 9 N -0.400 5.400 10 C 0.034 3.966 11 C -0.106 4.106 12 C -0.156 4.156 13 C -0.007 4.007 14 N -0.328 5.328 15 C 0.352 3.648 16 O -0.455 6.455 17 C -0.155 4.155 18 C -0.070 4.070 19 C -0.144 4.144 20 C -0.070 4.070 21 C -0.135 4.135 22 C -0.017 4.017 23 N -0.223 5.223 24 C -0.067 4.067 25 C -0.193 4.193 26 C -0.015 4.015 27 C -0.019 4.019 28 C -0.163 4.163 29 H 0.067 0.933 30 H 0.203 0.797 31 H 0.042 0.958 32 H 0.031 0.969 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.172 0.828 39 H 0.190 0.810 40 H 0.196 0.804 41 H 0.221 0.779 42 H 0.183 0.817 43 H 0.142 0.858 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.092 0.908 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 27.812 0.300 10.294 29.657 hybrid contribution -0.639 0.658 -1.107 1.438 sum 27.173 0.958 9.187 28.700 Atomic orbital electron populations 1.69908 1.07428 1.26840 1.59589 1.25616 0.96197 1.01702 1.02377 0.85346 0.78937 0.78850 0.78292 1.20235 1.22366 1.16558 1.19026 0.82966 0.93339 1.41657 0.93270 1.42651 1.02250 1.04157 1.90923 1.20786 0.90836 0.87348 0.97671 1.21263 0.93148 0.97614 0.98530 1.21828 0.93879 0.96664 1.03236 1.21693 0.94953 0.96791 0.87256 1.48162 1.33901 1.25096 1.25668 1.18424 0.79768 0.83650 0.82994 1.90766 1.50777 1.28470 1.75479 1.19765 1.08339 0.95589 0.91806 1.21839 0.92803 0.90978 1.01359 1.21300 0.99673 1.02376 0.91064 1.21656 0.93440 0.91523 1.00355 1.19287 1.03973 0.96555 0.93677 1.23939 0.90744 0.89760 0.97230 1.67507 1.12865 1.09017 1.32887 1.22444 0.95816 1.00945 0.87463 1.21945 1.02623 0.95121 0.99631 1.18079 0.96765 0.93752 0.92909 1.22082 0.90467 0.85368 1.04020 1.21814 0.95707 1.01356 0.97443 0.93311 0.79733 0.95815 0.96926 0.89590 0.89010 0.92629 0.89100 0.89821 0.82825 0.80967 0.80385 0.77910 0.81697 0.85831 0.88128 0.88334 0.90770 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.31 13.97 21.65 0.30 -63.01 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 3 Si 0.96 43.64 27.73 68.60 1.90 45.55 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.24 -9.43 6.52 99.48 0.65 -8.78 16 7 C -0.24 -13.63 10.47 84.03 0.88 -12.75 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16 9 N -0.75 -34.02 5.12 -343.46 -1.76 -35.77 16 10 C 0.16 5.86 5.65 86.38 0.49 6.35 16 11 C -0.09 -2.26 2.19 -10.77 -0.02 -2.28 16 12 C -0.12 -2.61 5.36 30.67 0.16 -2.45 16 13 C 0.11 2.35 6.42 86.36 0.55 2.91 16 14 N -0.60 -12.78 2.98 -823.57 -2.45 -15.24 16 15 C 0.56 14.20 6.50 86.67 0.56 14.77 16 16 O -0.57 -18.42 15.29 -4.03 -0.06 -18.49 16 17 C -0.15 -3.23 4.89 -19.92 -0.10 -3.33 16 18 C -0.05 -0.68 7.43 22.58 0.17 -0.51 16 19 C -0.13 -1.10 9.92 21.99 0.22 -0.88 16 20 C -0.05 -0.47 9.79 22.36 0.22 -0.25 16 21 C -0.13 -2.24 5.74 -21.33 -0.12 -2.36 16 22 C 0.15 2.47 11.05 85.32 0.94 3.41 16 23 N -0.51 -11.19 10.30 -195.39 -2.01 -13.21 16 24 C 0.08 1.71 11.07 84.14 0.93 2.64 16 25 C -0.17 -4.35 9.30 22.33 0.21 -4.14 16 26 C -0.01 -0.21 5.77 -21.12 -0.12 -0.34 16 27 C 0.10 1.85 5.52 86.22 0.48 2.33 16 28 C -0.12 -3.06 5.23 30.53 0.16 -2.90 16 29 H 0.26 15.70 8.31 -92.71 -0.77 14.92 16 30 H 0.37 15.30 4.70 -92.71 -0.44 14.86 16 31 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 1.91 7.03 -2.39 -0.02 1.89 16 38 H 0.15 1.43 7.40 -2.91 -0.02 1.41 16 39 H 0.17 0.28 8.06 -2.91 -0.02 0.26 16 40 H 0.18 0.21 8.06 -2.91 -0.02 0.19 16 41 H 0.20 1.42 8.06 -2.91 -0.02 1.40 16 42 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 43 H 0.12 3.41 6.61 -2.91 -0.02 3.39 16 44 H 0.10 1.60 4.77 -2.39 -0.01 1.59 16 45 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.07 1.98 7.15 -2.39 -0.02 1.96 16 47 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -80.43 375.31 2.49 -77.94 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.50 Total: 25.51 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 6.07 Total: -3.28 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -5.92 Total: -127.23 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.06 Total: -18.49 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.90 Total: 45.55 kcal Total: -80.43 2.49 -77.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206929802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.733 kcal (2) G-P(sol) polarization free energy of solvation -80.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds