Wall clock time and date at job start Tue Mar 31 2020 23:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00142 * 2 1 4 4 H 1.48499 * 109.46898 * 240.00212 * 3 2 1 5 5 H 1.48499 * 109.46843 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47364 * 119.99914 * 3 2 1 7 7 C 1.38809 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99801 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00281 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99955 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46955 * 179.97438 * 10 9 7 12 12 C 1.53040 * 109.45834 * 175.00183 * 11 10 9 13 13 C 1.53197 * 109.31395 * 181.37580 * 12 11 10 14 14 N 1.46926 * 108.76919 * 305.36400 * 13 12 11 15 15 C 1.34781 * 120.63033 * 233.58148 * 14 13 12 16 16 O 1.21602 * 119.99514 * 5.41800 * 15 14 13 17 17 C 1.47438 * 120.00255 * 185.41470 * 15 14 13 18 18 C 1.38948 * 121.17198 * 48.98412 * 17 15 14 19 19 N 1.32197 * 121.32021 * 179.97438 * 18 17 15 20 20 C 1.31196 * 123.69773 * 359.72282 * 19 18 17 21 21 C 1.40383 * 120.91026 * 0.54353 * 20 19 18 22 22 C 1.40399 * 122.14439 * 179.76325 * 21 20 19 23 23 C 1.36226 * 119.49245 * 179.72286 * 22 21 20 24 24 C 1.39298 * 121.10201 * 359.97438 * 23 22 21 25 25 C 1.36442 * 120.94818 * 0.02562 * 24 23 22 26 26 C 1.39689 * 119.43744 * 359.97438 * 25 24 23 27 27 C 1.46923 * 118.74121 * 53.86252 * 14 13 12 28 28 C 1.53037 * 109.45203 * 295.06144 * 11 10 9 29 29 H 0.97000 * 119.99565 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00188 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47241 * 60.00009 * 10 9 7 32 32 H 1.09002 * 109.47472 * 299.99826 * 10 9 7 33 33 H 1.08998 * 109.45820 * 55.02823 * 11 10 9 34 34 H 1.08999 * 109.50290 * 61.41867 * 12 11 10 35 35 H 1.09007 * 109.49863 * 301.32527 * 12 11 10 36 36 H 1.08993 * 109.58896 * 185.57833 * 13 12 11 37 37 H 1.08994 * 109.70528 * 65.21629 * 13 12 11 38 38 H 1.08007 * 119.33916 * 359.95969 * 18 17 15 39 39 H 1.07994 * 119.54692 * 180.02562 * 20 19 18 40 40 H 1.08004 * 120.24897 * 359.69463 * 22 21 20 41 41 H 1.07999 * 119.44886 * 179.97438 * 23 22 21 42 42 H 1.07994 * 119.52680 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.28129 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.58711 * 65.92338 * 27 14 13 45 45 H 1.09006 * 109.58990 * 186.35020 * 27 14 13 46 46 H 1.09001 * 109.50054 * 298.57369 * 28 11 10 47 47 H 1.09004 * 109.49858 * 58.66897 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 6 1.8249 -6.1414 -0.1245 13 6 0.8245 -7.3011 -0.1581 14 7 -0.0409 -7.2134 1.0260 15 6 -0.1824 -8.2683 1.8528 16 8 0.4835 -9.2708 1.6786 17 6 -1.1443 -8.2068 2.9685 18 6 -2.4529 -7.7852 2.7674 19 7 -3.3179 -7.7294 3.7655 20 6 -3.0269 -8.0634 5.0004 21 6 -1.7384 -8.5017 5.3444 22 6 -1.3975 -8.8608 6.6582 23 6 -0.1317 -9.2845 6.9306 24 6 0.8307 -9.3681 5.9270 25 6 0.5336 -9.0271 4.6398 26 6 -0.7549 -8.5885 4.3256 27 6 -0.7540 -5.9559 1.2883 28 6 0.2684 -4.8095 1.3087 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 2.6847 -3.7146 0.8905 32 1 2.6846 -3.7146 -0.8895 33 1 0.3797 -4.7130 -0.8407 34 1 2.4912 -6.2603 0.7299 35 1 2.4095 -6.1385 -1.0446 36 1 1.3630 -8.2486 -0.1478 37 1 0.2166 -7.2361 -1.0605 38 1 -2.7696 -7.4970 1.7759 39 1 -3.7868 -7.9922 5.7645 40 1 -2.1330 -8.8011 7.4468 41 1 0.1299 -9.5601 7.9415 42 1 1.8265 -9.7070 6.1716 43 1 1.2883 -9.0957 3.8702 44 1 -1.4877 -5.7809 0.5014 45 1 -1.2574 -6.0156 2.2533 46 1 0.9492 -4.9409 2.1497 47 1 -0.2549 -3.8586 1.4088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206949028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:45 Heat of formation + Delta-G solvation = 10.044315 kcal Electronic energy + Delta-G solvation = -28893.924319 eV Core-core repulsion = 25040.592102 eV Total energy + Delta-G solvation = -3853.332217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.11070 -40.83246 -38.93300 -38.37405 -36.59253 -34.67590 -33.89869 -32.45583 -32.19928 -31.95121 -30.67856 -28.34081 -26.29869 -25.24750 -24.75649 -24.27015 -23.93245 -22.92004 -21.58848 -20.33713 -19.37401 -19.07897 -18.53691 -18.22957 -17.25112 -16.89530 -16.70997 -16.28355 -15.82861 -15.69327 -15.46215 -15.38198 -15.31293 -15.13552 -14.90278 -14.68097 -14.39620 -14.14413 -14.03357 -13.67734 -13.52396 -13.22980 -13.10951 -12.95066 -12.90186 -12.73471 -12.33541 -12.26428 -12.19989 -11.97160 -11.72522 -11.60421 -11.39563 -11.32250 -11.03740 -10.91317 -10.47268 -10.12109 -9.79715 -9.14060 -8.99006 -7.95210 -5.23388 -0.91349 -0.16634 0.64914 1.46825 1.46916 1.49447 1.55678 1.82126 2.06049 2.55831 2.97855 3.15304 3.37939 3.40096 3.50020 3.66816 3.71311 3.72898 3.80247 3.86181 3.89459 4.05939 4.23341 4.25488 4.26207 4.29498 4.34933 4.49350 4.53229 4.57542 4.66311 4.71141 4.74276 4.81984 4.90853 4.97075 4.99107 5.02205 5.04849 5.12256 5.21884 5.36809 5.42130 5.45127 5.48491 5.50524 5.51329 5.84011 6.18952 6.27471 6.80998 6.92412 7.34162 8.10043 8.34493 9.27922 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.002595 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.610603 B =10789.208063 C =11381.708858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.248 4.248 8 H 0.071 0.929 9 N -0.742 5.742 10 C 0.158 3.842 11 C -0.083 4.083 12 C -0.115 4.115 13 C 0.114 3.886 14 N -0.597 5.597 15 C 0.570 3.430 16 O -0.570 6.570 17 C -0.194 4.194 18 C 0.121 3.879 19 N -0.517 5.517 20 C 0.183 3.817 21 C -0.135 4.135 22 C -0.071 4.071 23 C -0.124 4.124 24 C -0.083 4.083 25 C -0.141 4.141 26 C -0.011 4.011 27 C 0.110 3.890 28 C -0.116 4.116 29 H 0.252 0.748 30 H 0.376 0.624 31 H 0.011 0.989 32 H 0.021 0.979 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.169 0.831 39 H 0.207 0.793 40 H 0.177 0.823 41 H 0.164 0.836 42 H 0.148 0.852 43 H 0.114 0.886 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.051 0.949 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.621 -22.203 13.187 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.206 1.206 7 C -0.380 4.380 8 H 0.089 0.911 9 N -0.385 5.385 10 C 0.031 3.969 11 C -0.102 4.102 12 C -0.154 4.154 13 C -0.007 4.007 14 N -0.328 5.328 15 C 0.359 3.641 16 O -0.450 6.450 17 C -0.199 4.199 18 C -0.022 4.022 19 N -0.224 5.224 20 C 0.012 3.988 21 C -0.137 4.137 22 C -0.091 4.091 23 C -0.141 4.141 24 C -0.102 4.102 25 C -0.160 4.160 26 C -0.016 4.016 27 C -0.013 4.013 28 C -0.155 4.155 29 H 0.061 0.939 30 H 0.209 0.791 31 H 0.029 0.971 32 H 0.039 0.961 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.186 0.814 39 H 0.224 0.776 40 H 0.195 0.805 41 H 0.182 0.818 42 H 0.166 0.834 43 H 0.132 0.868 44 H 0.111 0.889 45 H 0.105 0.895 46 H 0.070 0.930 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.901 -22.303 12.710 26.134 hybrid contribution 1.202 0.974 -0.278 1.572 sum -3.699 -21.329 12.432 24.963 Atomic orbital electron populations 1.69792 1.06446 1.26160 1.59321 1.25522 0.96418 1.00925 1.03633 0.85246 0.77267 0.79340 0.78116 1.20467 1.21976 1.20563 1.19574 0.91400 0.85556 1.41498 0.91074 1.42542 1.05679 1.00970 1.89337 1.20804 0.93850 0.84993 0.97240 1.21197 0.97121 0.94000 0.97877 1.21819 0.97596 0.92641 1.03301 1.21734 0.92543 0.99618 0.86838 1.48142 1.46335 1.12468 1.25881 1.18118 0.81816 0.82762 0.81433 1.90742 1.47772 1.32761 1.73744 1.21824 0.96717 1.07636 0.93773 1.22914 0.87762 0.92540 0.98990 1.67225 1.36720 1.17183 1.01315 1.23985 0.94112 0.87284 0.93440 1.19286 0.95067 1.04047 0.95298 1.21495 0.98073 0.95203 0.94305 1.21394 0.92929 0.98977 1.00838 1.21454 1.01273 0.95628 0.91868 1.21013 0.95398 1.01185 0.98362 1.19105 0.94953 0.96217 0.91329 1.22092 0.94416 0.81695 1.03062 1.21855 0.98003 0.98039 0.97572 0.93938 0.79114 0.97106 0.96092 0.90642 0.92366 0.88861 0.89318 0.89229 0.81436 0.77610 0.80549 0.81822 0.83381 0.86760 0.88925 0.89453 0.93011 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.64 13.06 21.65 0.28 -58.36 16 2 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 3 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 9 N -0.74 -37.44 5.32 -343.44 -1.83 -39.27 16 10 C 0.16 6.26 5.65 86.38 0.49 6.75 16 11 C -0.08 -2.54 2.19 -10.77 -0.02 -2.57 16 12 C -0.11 -2.87 5.36 30.67 0.16 -2.71 16 13 C 0.11 2.67 6.44 86.36 0.56 3.23 16 14 N -0.60 -15.22 2.97 -821.94 -2.44 -17.65 16 15 C 0.57 16.36 6.80 86.67 0.59 16.95 16 16 O -0.57 -19.42 15.08 -4.04 -0.06 -19.48 16 17 C -0.19 -5.06 4.99 -18.60 -0.09 -5.15 16 18 C 0.12 2.79 8.75 84.81 0.74 3.54 16 19 N -0.52 -11.16 10.22 -193.73 -1.98 -13.14 16 20 C 0.18 2.96 11.00 85.31 0.94 3.90 16 21 C -0.13 -2.44 5.74 -21.33 -0.12 -2.56 16 22 C -0.07 -0.80 9.82 22.33 0.22 -0.58 16 23 C -0.12 -1.40 9.94 22.06 0.22 -1.18 16 24 C -0.08 -1.36 9.96 22.11 0.22 -1.14 16 25 C -0.14 -3.34 9.32 22.20 0.21 -3.14 16 26 C -0.01 -0.26 5.90 -19.94 -0.12 -0.38 16 27 C 0.11 2.68 5.35 86.51 0.46 3.14 16 28 C -0.12 -3.53 5.26 30.82 0.16 -3.37 16 29 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 30 H 0.38 19.84 6.85 -92.71 -0.63 19.21 16 31 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.30 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 36 H 0.09 2.18 6.99 -2.39 -0.02 2.16 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.17 3.35 7.37 -2.91 -0.02 3.32 16 39 H 0.21 1.45 8.06 -2.91 -0.02 1.43 16 40 H 0.18 0.52 8.06 -2.91 -0.02 0.49 16 41 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 42 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 43 H 0.11 3.14 6.58 -2.91 -0.02 3.12 16 44 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.09 2.10 5.14 -2.38 -0.01 2.09 16 46 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.07 2.34 7.15 -2.39 -0.02 2.32 16 Total: -1.00 -74.61 379.05 2.28 -72.33 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.36 Total: 29.49 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 5.92 Total: -2.08 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -5.96 Total: -128.42 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.06 Total: -19.48 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -74.61 2.28 -72.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206949028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.373 kcal (2) G-P(sol) polarization free energy of solvation -74.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds