Wall clock time and date at job start Tue Mar 31 2020 22:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42901 * 114.00296 * 2 1 4 4 H 1.09002 * 110.64076 * 29.29718 * 3 2 1 5 5 C 1.54322 * 110.71944 * 266.15692 * 3 2 1 6 6 N 1.47018 * 107.27336 * 219.26540 * 5 3 2 7 7 C 1.36937 * 125.64797 * 178.97600 * 6 5 3 8 8 H 1.08003 * 119.99735 * 179.97438 * 7 6 5 9 9 C 1.38807 * 120.00091 * 359.97438 * 7 6 5 10 10 N 1.31615 * 120.00222 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00040 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47137 * 59.99562 * 11 9 7 13 13 H 1.48497 * 109.47105 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.46772 * 299.99850 * 11 9 7 15 15 C 1.47426 * 108.70104 * 358.94171 * 6 5 3 16 16 C 1.54909 * 104.83381 * 24.12870 * 15 6 5 17 17 H 1.08997 * 111.00194 * 81.06198 * 16 15 6 18 18 N 1.46502 * 111.00219 * 204.91950 * 16 15 6 19 19 C 1.34778 * 119.99724 * 267.19171 * 18 16 15 20 20 O 1.21288 * 120.00098 * 0.02562 * 19 18 16 21 21 C 1.50699 * 119.99962 * 180.02562 * 19 18 16 22 22 C 1.53001 * 109.47091 * 180.02562 * 21 19 18 23 23 N 1.46496 * 109.47155 * 179.97438 * 22 21 19 24 24 C 1.33876 * 122.76523 * 269.71007 * 23 22 21 25 25 O 1.21226 * 125.39387 * 359.97438 * 24 23 22 26 26 C 1.51315 * 109.20608 * 179.84240 * 24 23 22 27 27 C 1.54221 * 103.55671 * 0.38482 * 26 24 23 28 28 C 1.33882 * 122.75984 * 89.99832 * 23 22 21 29 29 O 1.21223 * 125.39880 * 359.97438 * 28 23 22 30 30 H 1.09007 * 109.47355 * 299.99866 * 1 2 3 31 31 H 1.08992 * 109.47194 * 59.99987 * 1 2 3 32 32 H 1.09002 * 109.47542 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.88021 * 338.68244 * 5 3 2 34 34 H 1.09004 * 109.88163 * 99.84662 * 5 3 2 35 35 H 0.97002 * 120.00386 * 180.02562 * 10 9 7 36 36 H 1.08998 * 110.36876 * 142.97187 * 15 6 5 37 37 H 1.09009 * 110.36320 * 265.17860 * 15 6 5 38 38 H 0.96998 * 120.00124 * 87.19913 * 18 16 15 39 39 H 1.09006 * 109.47000 * 300.00308 * 21 19 18 40 40 H 1.08998 * 109.47115 * 60.00051 * 21 19 18 41 41 H 1.09002 * 109.46875 * 300.00269 * 22 21 19 42 42 H 1.08998 * 109.47401 * 59.99857 * 22 21 19 43 43 H 1.09001 * 110.79565 * 241.77565 * 26 24 23 44 44 H 1.09001 * 110.55074 * 118.87932 * 26 24 23 45 45 H 1.09004 * 110.60902 * 241.26038 * 27 26 24 46 46 H 1.09005 * 110.60504 * 118.29890 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3539 2.0183 0.4991 5 6 2.3207 1.7648 -1.4402 6 7 3.6084 2.4734 -1.4043 7 6 4.2483 3.0210 -2.4841 8 1 5.1951 3.5237 -2.3527 9 6 3.6801 2.9299 -3.7472 10 7 2.5265 2.3168 -3.9073 11 14 4.5534 3.6763 -5.2202 12 1 5.8862 3.0412 -5.3797 13 1 3.7454 3.4446 -6.4444 14 1 4.7231 5.1363 -5.0075 15 6 4.0961 2.4973 -0.0133 16 6 3.4103 1.2871 0.6684 17 1 3.9387 0.3608 0.4431 18 7 3.3041 1.4902 2.1153 19 6 4.2696 1.0265 2.9335 20 8 5.2265 0.4415 2.4718 21 6 4.1601 1.2349 4.4220 22 6 5.3770 0.6177 5.1142 23 7 5.2709 0.8208 6.5612 24 6 5.7740 1.8957 7.1807 25 8 6.3624 2.8069 6.6394 26 6 5.4890 1.7945 8.6634 27 6 4.7347 0.4559 8.7959 28 6 4.6677 -0.0559 7.3735 29 8 4.1496 -1.0949 7.0247 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 2.3923 0.8988 -2.0982 34 1 1.5376 2.4366 -1.7919 35 1 2.1296 2.2529 -4.7901 36 1 5.1798 2.3824 0.0108 37 1 3.8030 3.4266 0.4755 38 1 2.5390 1.9583 2.4845 39 1 4.1226 2.3028 4.6376 40 1 3.2517 0.7579 4.7898 41 1 5.4149 -0.4501 4.8986 42 1 6.2852 1.0950 4.7464 43 1 4.8621 2.6225 8.9943 44 1 6.4192 1.7685 9.2309 45 1 3.7325 0.6179 9.1928 46 1 5.2910 -0.2371 9.4272 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213138981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:38 Heat of formation + Delta-G solvation = -110.279008 kcal Electronic energy + Delta-G solvation = -29630.627071 eV Core-core repulsion = 25328.935229 eV Total energy + Delta-G solvation = -4301.691842 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.27112 -39.78411 -38.94675 -38.19210 -36.27906 -35.92298 -34.52716 -34.06590 -31.88432 -30.82853 -28.76324 -27.21701 -26.64030 -26.12863 -25.03414 -23.85885 -22.79627 -20.80223 -20.52509 -19.97408 -19.76991 -17.99234 -17.38670 -17.18394 -16.87697 -16.63790 -16.29083 -15.57285 -15.48585 -15.05129 -14.88278 -14.62713 -14.44098 -14.35312 -14.32844 -14.19156 -13.66736 -13.50821 -13.26378 -13.17412 -12.74170 -12.65953 -12.24996 -11.91280 -11.89669 -11.62456 -11.45900 -11.24264 -11.04231 -11.01170 -10.79392 -10.75019 -10.43425 -10.27153 -10.17998 -9.99593 -9.80433 -9.74884 -9.14235 -8.77008 -8.58177 -6.89212 -5.73053 -3.08277 1.08848 2.06237 2.27007 2.71640 3.27820 3.42034 3.45882 3.47321 3.59846 3.73694 3.91558 4.13168 4.29928 4.50316 4.53127 4.67683 4.73198 4.91942 5.04161 5.06551 5.11974 5.14428 5.22870 5.36244 5.39743 5.48595 5.57272 5.64572 5.65968 5.70863 5.85072 5.92562 6.04170 6.15316 6.42936 6.50336 6.61726 6.83686 6.89739 7.24987 7.35111 7.47235 7.61892 7.70984 7.86041 8.20083 8.32950 9.17596 9.77671 10.40691 11.38316 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017614 B = 0.002360 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.288864 B =11859.496997 C =13031.119672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.055 3.945 4 H 0.062 0.938 5 C 0.165 3.835 6 N -0.600 5.600 7 C -0.229 4.229 8 H 0.080 0.920 9 C -0.007 4.007 10 N -0.923 5.923 11 Si 0.915 3.085 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.131 3.869 16 C 0.132 3.868 17 H 0.108 0.892 18 N -0.714 5.714 19 C 0.521 3.479 20 O -0.536 6.536 21 C -0.155 4.155 22 C 0.114 3.886 23 N -0.575 5.575 24 C 0.523 3.477 25 O -0.476 6.476 26 C -0.157 4.157 27 C -0.157 4.157 28 C 0.523 3.477 29 O -0.477 6.477 30 H 0.032 0.968 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.254 0.746 36 H 0.050 0.950 37 H 0.023 0.977 38 H 0.397 0.603 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.473 -1.984 28.024 28.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.004 4.004 4 H 0.080 0.920 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.357 4.357 8 H 0.098 0.902 9 C -0.203 4.203 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.211 1.211 15 C 0.003 3.997 16 C 0.027 3.973 17 H 0.126 0.874 18 N -0.364 5.364 19 C 0.306 3.694 20 O -0.413 6.413 21 C -0.196 4.196 22 C -0.007 4.007 23 N -0.319 5.319 24 C 0.312 3.688 25 O -0.346 6.346 26 C -0.197 4.197 27 C -0.197 4.197 28 C 0.312 3.688 29 O -0.348 6.348 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.230 0.770 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.669 -2.643 26.922 27.059 hybrid contribution -0.349 0.884 -0.706 1.184 sum -1.018 -1.760 26.215 26.294 Atomic orbital electron populations 1.22702 0.81713 1.02056 0.99753 1.87906 1.19110 1.27541 1.95054 1.23845 0.92785 0.84084 0.99671 0.92013 1.21575 0.88446 0.97053 0.89021 1.44250 1.21041 1.65917 1.01598 1.19031 1.02614 1.29111 0.84962 0.90182 1.24821 0.97316 1.00668 0.97528 1.69926 1.17872 1.47192 1.22048 0.86148 0.78626 0.78765 0.81921 1.21027 1.21576 1.21123 1.21822 0.97673 0.93673 0.86502 1.22412 0.96371 1.01227 0.77303 0.87415 1.45912 1.24409 1.58589 1.07477 1.20158 0.82722 0.78614 0.87951 1.90744 1.31546 1.41513 1.77510 1.21921 1.00576 1.03787 0.93348 1.21524 0.99416 1.04069 0.75719 1.46850 1.52004 1.22464 1.10534 1.20884 0.76828 0.80584 0.90527 1.90825 1.37521 1.33526 1.72761 1.22481 1.04256 0.99414 0.93539 1.22486 1.04800 0.97569 0.94818 1.20888 0.76095 0.82826 0.88983 1.90817 1.41076 1.21905 1.80985 0.94894 0.93580 0.90236 0.91944 0.93370 0.93596 0.93156 0.95942 0.76969 0.88336 0.88419 0.87766 0.87706 0.86041 0.86122 0.86072 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.86 101.05 1.10 1.59 16 2 O -0.38 -7.06 10.44 -35.23 -0.37 -7.43 16 3 C 0.06 1.05 3.06 -24.90 -0.08 0.98 16 4 H 0.06 1.03 7.71 -51.93 -0.40 0.63 16 5 C 0.16 4.03 5.15 -3.07 -0.02 4.01 16 6 N -0.60 -15.62 3.39 -170.07 -0.58 -16.20 16 7 C -0.23 -6.49 10.28 -15.06 -0.15 -6.64 16 8 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 9 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 10 N -0.92 -27.20 10.31 55.49 0.57 -26.63 16 11 Si 0.92 22.36 29.55 -169.99 -5.02 17.34 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 C 0.13 2.83 6.93 -2.53 -0.02 2.81 16 16 C 0.13 2.51 3.15 -65.78 -0.21 2.30 16 17 H 0.11 2.35 7.54 -51.93 -0.39 1.96 16 18 N -0.71 -10.41 5.20 -51.73 -0.27 -10.68 16 19 C 0.52 7.69 7.83 -10.99 -0.09 7.60 16 20 O -0.54 -10.10 15.62 5.55 0.09 -10.02 16 21 C -0.16 -1.62 6.02 -27.88 -0.17 -1.79 16 22 C 0.11 1.23 4.85 -4.04 -0.02 1.21 16 23 N -0.58 -4.89 2.55 -115.34 -0.29 -5.18 16 24 C 0.52 4.09 8.08 -11.09 -0.09 4.00 16 25 O -0.48 -5.62 17.47 5.60 0.10 -5.52 16 26 C -0.16 -0.42 7.03 -26.94 -0.19 -0.61 16 27 C -0.16 -0.41 7.03 -26.94 -0.19 -0.60 16 28 C 0.52 4.04 8.08 -11.08 -0.09 3.95 16 29 O -0.48 -5.54 17.48 5.61 0.10 -5.44 16 30 H 0.03 0.40 8.11 -51.93 -0.42 -0.03 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.74 7.30 -51.93 -0.38 1.36 16 34 H 0.05 1.27 7.51 -51.93 -0.39 0.88 16 35 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.02 0.47 8.14 -51.92 -0.42 0.04 16 38 H 0.40 4.50 8.57 -40.82 -0.35 4.15 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.10 1.24 7.79 -51.93 -0.40 0.84 16 42 H 0.10 1.26 7.78 -51.93 -0.40 0.85 16 43 H 0.12 0.12 8.14 -51.93 -0.42 -0.31 16 44 H 0.12 0.13 8.14 -51.93 -0.42 -0.29 16 45 H 0.12 0.11 8.14 -51.93 -0.42 -0.31 16 46 H 0.12 0.12 8.14 -51.93 -0.42 -0.30 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -37.31 387.02 -7.06 -44.37 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.91 Total: 1.04 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: -0.30 Total: 18.51 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.57 Total: -58.69 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.09 Total: -28.40 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.31 -7.06 -44.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213138981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.910 kcal (2) G-P(sol) polarization free energy of solvation -37.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds