Wall clock time and date at job start Tue Mar 31 2020 22:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42901 * 114.00296 * 2 1 4 4 H 1.09002 * 110.64076 * 29.29718 * 3 2 1 5 5 C 1.54322 * 110.71944 * 266.15692 * 3 2 1 6 6 N 1.47018 * 107.27336 * 219.26540 * 5 3 2 7 7 C 1.36937 * 125.64797 * 178.97600 * 6 5 3 8 8 H 1.08003 * 119.99735 * 179.97438 * 7 6 5 9 9 C 1.38807 * 120.00091 * 359.97438 * 7 6 5 10 10 N 1.31615 * 120.00222 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00040 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47137 * 59.99562 * 11 9 7 13 13 H 1.48497 * 109.47105 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.46772 * 299.99850 * 11 9 7 15 15 C 1.47426 * 108.70104 * 358.94171 * 6 5 3 16 16 C 1.54909 * 104.83381 * 24.12870 * 15 6 5 17 17 H 1.08997 * 111.00194 * 81.06198 * 16 15 6 18 18 N 1.46502 * 111.00219 * 204.91950 * 16 15 6 19 19 C 1.34778 * 119.99724 * 267.19171 * 18 16 15 20 20 O 1.21288 * 120.00098 * 0.02562 * 19 18 16 21 21 C 1.50699 * 119.99962 * 180.02562 * 19 18 16 22 22 C 1.53001 * 109.47091 * 180.02562 * 21 19 18 23 23 N 1.46496 * 109.47155 * 179.97438 * 22 21 19 24 24 C 1.33876 * 122.76523 * 269.71007 * 23 22 21 25 25 O 1.21226 * 125.39387 * 359.97438 * 24 23 22 26 26 C 1.51315 * 109.20608 * 179.84240 * 24 23 22 27 27 C 1.54221 * 103.55671 * 0.38482 * 26 24 23 28 28 C 1.33882 * 122.75984 * 89.99832 * 23 22 21 29 29 O 1.21223 * 125.39880 * 359.97438 * 28 23 22 30 30 H 1.09007 * 109.47355 * 299.99866 * 1 2 3 31 31 H 1.08992 * 109.47194 * 59.99987 * 1 2 3 32 32 H 1.09002 * 109.47542 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.88021 * 338.68244 * 5 3 2 34 34 H 1.09004 * 109.88163 * 99.84662 * 5 3 2 35 35 H 0.97002 * 120.00386 * 180.02562 * 10 9 7 36 36 H 1.08998 * 110.36876 * 142.97187 * 15 6 5 37 37 H 1.09009 * 110.36320 * 265.17860 * 15 6 5 38 38 H 0.96998 * 120.00124 * 87.19913 * 18 16 15 39 39 H 1.09006 * 109.47000 * 300.00308 * 21 19 18 40 40 H 1.08998 * 109.47115 * 60.00051 * 21 19 18 41 41 H 1.09002 * 109.46875 * 300.00269 * 22 21 19 42 42 H 1.08998 * 109.47401 * 59.99857 * 22 21 19 43 43 H 1.09001 * 110.79565 * 241.77565 * 26 24 23 44 44 H 1.09001 * 110.55074 * 118.87932 * 26 24 23 45 45 H 1.09004 * 110.60902 * 241.26038 * 27 26 24 46 46 H 1.09005 * 110.60504 * 118.29890 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3539 2.0183 0.4991 5 6 2.3207 1.7648 -1.4402 6 7 3.6084 2.4734 -1.4043 7 6 4.2483 3.0210 -2.4841 8 1 5.1951 3.5237 -2.3527 9 6 3.6801 2.9299 -3.7472 10 7 2.5265 2.3168 -3.9073 11 14 4.5534 3.6763 -5.2202 12 1 5.8862 3.0412 -5.3797 13 1 3.7454 3.4446 -6.4444 14 1 4.7231 5.1363 -5.0075 15 6 4.0961 2.4973 -0.0133 16 6 3.4103 1.2871 0.6684 17 1 3.9387 0.3608 0.4431 18 7 3.3041 1.4902 2.1153 19 6 4.2696 1.0265 2.9335 20 8 5.2265 0.4415 2.4718 21 6 4.1601 1.2349 4.4220 22 6 5.3770 0.6177 5.1142 23 7 5.2709 0.8208 6.5612 24 6 5.7740 1.8957 7.1807 25 8 6.3624 2.8069 6.6394 26 6 5.4890 1.7945 8.6634 27 6 4.7347 0.4559 8.7959 28 6 4.6677 -0.0559 7.3735 29 8 4.1496 -1.0949 7.0247 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 2.3923 0.8988 -2.0982 34 1 1.5376 2.4366 -1.7919 35 1 2.1296 2.2529 -4.7901 36 1 5.1798 2.3824 0.0108 37 1 3.8030 3.4266 0.4755 38 1 2.5390 1.9583 2.4845 39 1 4.1226 2.3028 4.6376 40 1 3.2517 0.7579 4.7898 41 1 5.4149 -0.4501 4.8986 42 1 6.2852 1.0950 4.7464 43 1 4.8621 2.6225 8.9943 44 1 6.4192 1.7685 9.2309 45 1 3.7325 0.6179 9.1928 46 1 5.2910 -0.2371 9.4272 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213138981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:37 Heat of formation + Delta-G solvation = -139.878426 kcal Electronic energy + Delta-G solvation = -29631.910598 eV Core-core repulsion = 25328.935229 eV Total energy + Delta-G solvation = -4302.975369 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.87210 -41.14923 -39.71206 -39.64003 -37.55320 -36.98744 -35.69727 -35.12580 -33.74068 -31.73680 -30.47944 -28.89170 -27.56508 -27.06782 -26.41625 -25.28869 -23.27005 -22.41695 -22.11857 -21.47397 -20.42192 -19.22987 -18.72640 -18.05601 -17.85001 -17.56183 -17.50734 -17.20716 -16.58556 -16.50775 -15.93513 -15.84025 -15.62100 -15.28030 -15.22625 -15.05127 -14.90953 -14.72047 -14.58457 -14.28898 -14.03194 -13.66494 -13.58959 -13.40340 -13.22038 -13.02575 -12.75099 -12.61424 -12.41812 -12.34586 -12.14014 -12.05081 -11.89035 -11.70086 -11.64300 -11.20616 -11.06535 -10.90227 -10.79223 -10.61671 -10.15636 -9.00041 -7.89859 -5.28426 0.51435 1.39890 1.43800 1.47946 1.50605 1.54058 1.70002 2.08353 2.44782 2.73951 3.24554 3.29235 3.31148 3.48667 3.53176 3.67995 3.70386 3.82523 3.88408 3.89570 4.07158 4.24045 4.30191 4.31922 4.38768 4.42577 4.53117 4.56890 4.62734 4.77472 4.79332 4.83512 4.85355 4.94987 4.95872 4.99560 5.29639 5.34096 5.41272 5.62644 5.83787 6.10748 6.28409 6.34680 6.43772 6.74303 7.01906 7.14890 7.66856 8.29343 9.19472 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017614 B = 0.002360 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.288864 B =11859.496997 C =13031.119672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.076 3.924 4 H 0.098 0.902 5 C 0.174 3.826 6 N -0.622 5.622 7 C -0.249 4.249 8 H 0.083 0.917 9 C -0.062 4.062 10 N -0.949 5.949 11 Si 0.983 3.017 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.273 1.273 15 C 0.131 3.869 16 C 0.149 3.851 17 H 0.075 0.925 18 N -0.699 5.699 19 C 0.518 3.482 20 O -0.582 6.582 21 C -0.137 4.137 22 C 0.113 3.887 23 N -0.579 5.579 24 C 0.518 3.482 25 O -0.523 6.523 26 C -0.140 4.140 27 C -0.139 4.139 28 C 0.518 3.482 29 O -0.523 6.523 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.100 0.900 33 H 0.016 0.984 34 H 0.023 0.977 35 H 0.249 0.751 36 H 0.034 0.966 37 H 0.044 0.956 38 H 0.418 0.582 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.150 0.850 44 H 0.145 0.855 45 H 0.150 0.850 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.443 -0.949 31.713 31.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C 0.017 3.983 4 H 0.116 0.884 5 C 0.048 3.952 6 N -0.350 5.350 7 C -0.378 4.378 8 H 0.100 0.900 9 C -0.256 4.256 10 N -0.597 5.597 11 Si 0.810 3.190 12 H -0.206 1.206 13 H -0.217 1.217 14 H -0.198 1.198 15 C 0.005 3.995 16 C 0.042 3.958 17 H 0.093 0.907 18 N -0.351 5.351 19 C 0.305 3.695 20 O -0.461 6.461 21 C -0.177 4.177 22 C -0.010 4.010 23 N -0.321 5.321 24 C 0.310 3.690 25 O -0.397 6.397 26 C -0.179 4.179 27 C -0.178 4.178 28 C 0.310 3.690 29 O -0.397 6.397 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.118 0.882 33 H 0.035 0.965 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.255 0.745 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.167 0.833 44 H 0.162 0.838 45 H 0.168 0.832 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.664 -1.591 30.694 30.780 hybrid contribution -0.029 0.509 -1.832 1.902 sum -1.693 -1.082 28.862 28.932 Atomic orbital electron populations 1.22985 0.79265 1.03893 1.00799 1.87890 1.21829 1.27033 1.94947 1.23504 0.93468 0.85231 0.96093 0.88419 1.21308 0.87315 0.94566 0.91965 1.44523 1.21750 1.65846 1.02884 1.19412 1.02982 1.29204 0.86182 0.89966 1.25696 0.98192 1.01432 1.00237 1.70151 1.19150 1.48273 1.22169 0.85100 0.77369 0.78394 0.78136 1.20604 1.21693 1.19840 1.21927 0.96974 0.95647 0.84995 1.21827 0.95650 0.98459 0.79823 0.90712 1.45660 1.25344 1.58718 1.05380 1.20928 0.81632 0.77262 0.89653 1.90733 1.33403 1.43426 1.78588 1.21823 1.01196 1.05205 0.89504 1.21268 0.98916 1.02732 0.78064 1.47039 1.52318 1.23339 1.09423 1.21867 0.75272 0.79214 0.92674 1.90806 1.39628 1.35167 1.74149 1.22608 1.05871 1.00316 0.89071 1.22613 1.06792 0.97425 0.90973 1.21861 0.74487 0.81770 0.90864 1.90799 1.43079 1.23779 1.82035 0.91616 0.94641 0.88169 0.96528 0.95841 0.94136 0.94751 0.93809 0.74464 0.86248 0.86196 0.89589 0.89668 0.83256 0.83751 0.83249 0.83705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.86 113.37 1.23 1.94 16 2 O -0.40 -14.72 10.44 -148.98 -1.55 -16.27 16 3 C 0.08 2.89 3.06 31.78 0.10 2.98 16 4 H 0.10 3.01 7.71 -2.39 -0.02 2.99 16 5 C 0.17 8.86 5.15 86.73 0.45 9.31 16 6 N -0.62 -33.44 3.39 -691.99 -2.35 -35.79 16 7 C -0.25 -14.52 10.28 84.03 0.86 -13.65 16 8 H 0.08 4.60 7.83 -2.91 -0.02 4.58 16 9 C -0.06 -3.64 5.49 84.86 0.47 -3.17 16 10 N -0.95 -58.00 10.31 21.65 0.22 -57.77 16 11 Si 0.98 46.85 29.55 68.60 2.03 48.88 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 14 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 15 C 0.13 5.76 6.93 86.85 0.60 6.36 16 16 C 0.15 5.72 3.15 46.38 0.15 5.86 16 17 H 0.07 3.41 7.54 -2.39 -0.02 3.39 16 18 N -0.70 -19.53 5.20 -435.95 -2.27 -21.80 16 19 C 0.52 15.16 7.83 87.66 0.69 15.85 16 20 O -0.58 -22.79 15.62 -3.06 -0.05 -22.83 16 21 C -0.14 -2.68 6.02 29.85 0.18 -2.50 16 22 C 0.11 2.48 4.85 86.38 0.42 2.90 16 23 N -0.58 -9.13 2.55 -756.66 -1.93 -11.06 16 24 C 0.52 7.11 8.08 87.99 0.71 7.82 16 25 O -0.52 -12.01 17.47 -2.86 -0.05 -12.06 16 26 C -0.14 -0.13 7.03 30.46 0.21 0.08 16 27 C -0.14 -0.11 7.03 30.46 0.21 0.11 16 28 C 0.52 6.96 8.08 87.99 0.71 7.67 16 29 O -0.52 -11.67 17.48 -2.85 -0.05 -11.72 16 30 H 0.07 1.36 8.11 -2.38 -0.02 1.34 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.02 0.98 7.30 -2.39 -0.02 0.96 16 34 H 0.02 1.29 7.51 -2.38 -0.02 1.27 16 35 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.42 8.23 8.57 -92.71 -0.79 7.43 16 39 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.09 2.18 7.79 -2.39 -0.02 2.16 16 42 H 0.08 2.18 7.78 -2.39 -0.02 2.16 16 43 H 0.15 -0.55 8.14 -2.39 -0.02 -0.57 16 44 H 0.14 -0.41 8.14 -2.39 -0.02 -0.43 16 45 H 0.15 -0.58 8.14 -2.38 -0.02 -0.60 16 46 H 0.15 -0.44 8.14 -2.38 -0.02 -0.46 16 Total: -1.00 -88.66 387.02 1.20 -87.47 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.21 Total: 11.41 kcal Atomic # 6 Polarization: 34.57 SS G_CDS: 6.99 Total: 41.56 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -6.32 Total: -126.43 kcal Atomic # 8 Polarization: -61.18 SS G_CDS: -1.70 Total: -62.89 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -88.66 1.20 -87.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213138981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.412 kcal (2) G-P(sol) polarization free energy of solvation -88.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds