Wall clock time and date at job start Tue Mar 31 2020 22:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 116.99707 * 2 1 4 4 O 1.20825 * 120.00238 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99720 * 180.02562 * 3 2 1 6 6 H 1.09002 * 115.56455 * 34.30904 * 5 3 2 7 7 C 1.52999 * 117.49845 * 248.62421 * 5 3 2 8 8 C 1.52997 * 59.99973 * 252.50779 * 7 5 3 9 9 H 1.09003 * 117.50153 * 107.50993 * 8 7 5 10 10 C 1.50702 * 117.50198 * 252.51130 * 8 7 5 11 11 O 1.21278 * 120.00164 * 68.60447 * 10 8 7 12 12 N 1.34774 * 119.99849 * 248.60710 * 10 8 7 13 13 C 1.46499 * 120.00133 * 179.97438 * 12 10 8 14 14 H 1.09003 * 112.84469 * 336.19957 * 13 12 10 15 15 C 1.54049 * 113.61109 * 107.50629 * 13 12 10 16 16 C 1.53786 * 86.98426 * 89.11993 * 15 13 12 17 17 H 1.09002 * 113.61357 * 270.83585 * 16 15 13 18 18 N 1.46900 * 113.61608 * 140.01769 * 16 15 13 19 19 C 1.46895 * 110.99924 * 105.85932 * 18 16 15 20 20 C 1.50700 * 109.47106 * 180.02562 * 19 18 16 21 21 O 1.21294 * 120.00101 * 0.02562 * 20 19 18 22 22 N 1.34774 * 120.00188 * 180.02562 * 20 19 18 23 23 C 1.37098 * 120.00693 * 180.02562 * 22 20 19 24 24 H 1.08003 * 119.99366 * 359.97438 * 23 22 20 25 25 C 1.38946 * 120.00595 * 179.97438 * 23 22 20 26 26 N 1.31405 * 119.99867 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 119.99990 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47354 * 59.99469 * 27 25 23 29 29 H 1.48505 * 109.46991 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.46967 * 299.99256 * 27 25 23 31 31 C 1.53781 * 87.17350 * 25.42668 * 16 15 13 32 32 H 1.09002 * 109.47455 * 59.99811 * 1 2 3 33 33 H 1.09001 * 109.47134 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47152 * 300.00060 * 1 2 3 35 35 H 1.08996 * 117.49948 * 145.01832 * 7 5 3 36 36 H 1.09005 * 117.49929 * 359.97438 * 7 5 3 37 37 H 0.96999 * 120.00152 * 0.02562 * 12 10 8 38 38 H 1.08992 * 113.69868 * 334.60103 * 15 13 12 39 39 H 1.09000 * 113.61076 * 203.61862 * 15 13 12 40 40 H 1.00897 * 111.00180 * 229.81663 * 18 16 15 41 41 H 1.08994 * 109.47448 * 300.00310 * 19 18 16 42 42 H 1.09001 * 109.47145 * 60.00387 * 19 18 16 43 43 H 0.97006 * 119.99894 * 359.97438 * 22 20 19 44 44 H 0.97008 * 120.00190 * 180.02562 * 26 25 23 45 45 H 1.08999 * 113.61567 * 89.07405 * 31 16 15 46 46 H 1.08998 * 113.61196 * 219.97759 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0783 0.4885 -0.5552 7 6 4.2464 1.8056 1.2630 8 6 4.2008 2.6671 -0.0005 9 1 3.5300 3.5263 0.0000 10 6 5.4857 2.8463 -0.7674 11 8 5.9780 1.9058 -1.3539 12 7 6.0877 4.0516 -0.8013 13 6 7.3371 4.2257 -1.5463 14 1 7.8879 3.2936 -1.6725 15 6 7.1709 5.0281 -2.8508 16 6 7.4318 6.2904 -2.0120 17 1 6.5281 6.7254 -1.5850 18 7 8.2774 7.2825 -2.6891 19 6 7.4804 8.4277 -3.1485 20 6 8.3798 9.4217 -3.8372 21 8 9.5678 9.1979 -3.9360 22 7 7.8641 10.5594 -4.3432 23 6 8.6821 11.4635 -4.9702 24 1 9.7399 11.2642 -5.0582 25 6 8.1504 12.6362 -5.4924 26 7 6.8633 12.8785 -5.3858 27 14 9.2652 13.8683 -6.3460 28 1 9.9184 13.2203 -7.5116 29 1 8.4594 15.0258 -6.8110 30 1 10.3039 14.3381 -5.3944 31 6 8.2030 5.3886 -1.0338 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 5.2057 1.3684 1.5397 36 1 3.6053 2.0981 2.0947 37 1 5.6942 4.8037 -0.3318 38 1 6.1653 4.9816 -3.2686 39 1 7.9469 4.8265 -3.5892 40 1 9.0317 7.5837 -2.0904 41 1 6.7182 8.0831 -3.8472 42 1 7.0007 8.9032 -2.2930 43 1 6.9140 10.7383 -4.2646 44 1 6.4919 13.6970 -5.7507 45 1 9.2606 5.2853 -1.2763 46 1 8.0299 5.6330 0.0143 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265468390.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:19 Heat of formation + Delta-G solvation = -131.325637 kcal Electronic energy + Delta-G solvation = -27818.928531 eV Core-core repulsion = 23516.324039 eV Total energy + Delta-G solvation = -4302.604493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.93346 -41.21987 -40.22987 -39.57138 -37.96753 -36.80568 -36.12449 -35.40759 -33.55327 -33.17465 -29.25850 -28.54137 -26.72364 -26.68748 -25.84689 -25.00573 -23.62386 -21.96998 -21.18906 -21.03158 -20.29464 -19.88367 -19.35938 -18.15325 -17.86870 -17.55918 -17.43485 -17.10318 -16.84954 -16.43074 -16.15076 -16.06058 -15.74609 -15.54097 -15.22588 -14.96706 -14.81460 -14.39466 -14.12485 -13.79630 -13.52076 -13.46998 -13.39166 -13.27961 -13.08267 -12.95298 -12.87433 -12.57773 -12.42934 -12.12341 -11.96871 -11.85967 -11.79772 -11.65521 -11.52775 -11.48499 -11.46366 -11.00852 -10.33435 -10.09384 -10.01852 -9.30082 -8.46696 -5.95659 0.87048 1.31322 1.39982 1.41921 1.52852 1.53640 2.05447 2.11871 2.29381 2.64705 2.96917 3.20732 3.36993 3.49363 3.56916 3.59364 3.60244 3.67490 3.89879 3.98003 4.10636 4.14668 4.27331 4.30697 4.30981 4.47412 4.56386 4.59553 4.60127 4.69615 4.80274 4.84770 4.88766 4.90680 5.01486 5.09062 5.14780 5.26325 5.40492 5.54774 5.93380 6.16895 6.45577 6.47610 6.59782 6.60078 7.12370 7.15744 7.56208 8.11484 8.70374 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019596 B = 0.001565 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.498075 B =17890.899976 C =18963.053496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.496 3.504 4 O -0.532 6.532 5 C -0.150 4.150 6 H 0.145 0.855 7 C -0.087 4.087 8 C -0.160 4.160 9 H 0.148 0.852 10 C 0.547 3.453 11 O -0.575 6.575 12 N -0.692 5.692 13 C 0.127 3.873 14 H 0.095 0.905 15 C -0.141 4.141 16 C 0.058 3.942 17 H 0.088 0.912 18 N -0.671 5.671 19 C 0.066 3.934 20 C 0.436 3.564 21 O -0.623 6.623 22 N -0.573 5.573 23 C -0.336 4.336 24 H 0.079 0.921 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.993 3.007 28 H -0.273 1.273 29 H -0.270 1.270 30 H -0.270 1.270 31 C -0.130 4.130 32 H 0.060 0.940 33 H 0.132 0.868 34 H 0.067 0.933 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.417 0.583 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.348 0.652 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.101 0.899 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.415 -23.908 17.742 32.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.340 3.660 4 O -0.422 6.422 5 C -0.170 4.170 6 H 0.163 0.837 7 C -0.124 4.124 8 C -0.181 4.181 9 H 0.166 0.834 10 C 0.334 3.666 11 O -0.454 6.454 12 N -0.343 5.343 13 C 0.020 3.980 14 H 0.113 0.887 15 C -0.180 4.180 16 C -0.052 4.052 17 H 0.106 0.894 18 N -0.304 5.304 19 C -0.067 4.067 20 C 0.224 3.776 21 O -0.510 6.510 22 N -0.211 5.211 23 C -0.466 4.466 24 H 0.097 0.903 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.817 3.183 28 H -0.198 1.198 29 H -0.195 1.195 30 H -0.196 1.196 31 C -0.168 4.168 32 H 0.079 0.921 33 H 0.150 0.850 34 H 0.086 0.914 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.254 0.746 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.168 0.832 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.120 0.880 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.653 -24.572 16.594 31.858 hybrid contribution -0.677 1.761 0.006 1.887 sum -12.330 -22.811 16.601 30.789 Atomic orbital electron populations 1.23608 0.74315 1.05912 1.02730 1.86486 1.25233 1.32356 1.83428 1.22723 0.90673 0.81302 0.71271 1.90674 1.67519 1.37191 1.46826 1.21670 0.87747 0.99646 1.07930 0.83718 1.23284 1.03107 0.96604 0.89416 1.22270 0.96656 0.96094 1.03089 0.83440 1.19757 0.84731 0.82462 0.79628 1.90717 1.66566 1.41549 1.46596 1.45472 1.24710 1.11713 1.52394 1.21662 0.85357 0.98685 0.92257 0.88662 1.23583 1.01915 0.95410 0.97140 1.23253 0.96293 0.91055 0.94595 0.89409 1.60182 1.12184 1.13190 1.44817 1.21573 0.94895 0.90589 0.99630 1.20933 0.89267 0.83617 0.83788 1.90489 1.18421 1.78231 1.63865 1.41939 1.10868 1.17416 1.50827 1.19648 0.93092 0.99650 1.34210 0.90302 1.26036 0.97752 0.99425 0.97988 1.69665 1.12331 1.27677 1.46426 0.84988 0.77756 0.77194 0.78395 1.19843 1.19485 1.19563 1.23481 1.00019 0.93404 0.99896 0.92111 0.84971 0.91391 0.85110 0.84920 0.74555 0.91974 0.89715 0.83221 0.88506 0.91222 0.77001 0.91297 0.88026 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.36 -5.39 10.57 -51.41 -0.54 -5.93 16 3 C 0.50 8.41 7.74 71.24 0.55 8.96 16 4 O -0.53 -11.52 16.01 21.97 0.35 -11.17 16 5 C -0.15 -2.08 5.81 -11.54 -0.07 -2.15 16 6 H 0.15 2.20 7.67 -2.39 -0.02 2.18 16 7 C -0.09 -0.70 9.94 30.59 0.30 -0.39 16 8 C -0.16 -2.04 5.70 -11.54 -0.07 -2.11 16 9 H 0.15 1.70 7.67 -2.39 -0.02 1.69 16 10 C 0.55 9.69 7.61 87.66 0.67 10.36 16 11 O -0.57 -14.82 15.86 -3.02 -0.05 -14.87 16 12 N -0.69 -9.81 5.26 -439.61 -2.31 -12.12 16 13 C 0.13 2.23 4.33 45.61 0.20 2.42 16 14 H 0.10 1.96 7.46 -2.39 -0.02 1.95 16 15 C -0.14 -3.07 7.70 31.21 0.24 -2.83 16 16 C 0.06 1.18 3.99 45.44 0.18 1.36 16 17 H 0.09 1.51 7.88 -2.39 -0.02 1.49 16 18 N -0.67 -19.95 6.18 -492.86 -3.04 -22.99 16 19 C 0.07 2.19 6.02 85.56 0.52 2.70 16 20 C 0.44 20.69 7.82 87.66 0.69 21.37 16 21 O -0.62 -34.50 15.78 -3.07 -0.05 -34.55 16 22 N -0.57 -29.46 5.29 -306.99 -1.62 -31.08 16 23 C -0.34 -19.19 9.68 84.04 0.81 -18.38 16 24 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 25 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 26 N -0.92 -49.71 13.05 21.66 0.28 -49.43 16 27 Si 0.99 42.98 29.55 68.60 2.03 45.00 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 29 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 30 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 31 C -0.13 -2.03 7.41 31.12 0.23 -1.80 16 32 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 33 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.07 0.59 8.13 -2.39 -0.02 0.57 16 35 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.13 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.42 3.64 8.70 -92.71 -0.81 2.83 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.35 10.66 8.26 -89.70 -0.74 9.92 16 41 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 42 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 43 H 0.40 19.31 7.90 -92.70 -0.73 18.57 16 44 H 0.28 14.07 8.31 -92.70 -0.77 13.30 16 45 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -77.31 399.22 -0.28 -77.58 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -1.24 Total: 38.77 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: 5.92 Total: 20.79 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -6.70 Total: -115.62 kcal Atomic # 8 Polarization: -66.23 SS G_CDS: -0.29 Total: -66.52 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -77.31 -0.28 -77.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265468390.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.741 kcal (2) G-P(sol) polarization free energy of solvation -77.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds