Wall clock time and date at job start Tue Mar 31 2020 22:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34225 * 117.00135 * 2 1 4 4 O 1.20828 * 120.00090 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99821 * 179.97438 * 3 2 1 6 6 H 1.09000 * 115.56809 * 298.33572 * 5 3 2 7 7 C 1.53003 * 117.49505 * 152.64314 * 5 3 2 8 8 C 1.52998 * 60.00067 * 252.51277 * 7 5 3 9 9 H 1.09000 * 117.51792 * 252.52221 * 8 7 5 10 10 C 1.50699 * 117.49732 * 107.49220 * 8 7 5 11 11 O 1.21281 * 120.00252 * 27.18581 * 10 8 7 12 12 N 1.34779 * 119.99695 * 207.18621 * 10 8 7 13 13 C 1.46504 * 119.99651 * 179.97438 * 12 10 8 14 14 H 1.08994 * 112.85312 * 336.19412 * 13 12 10 15 15 C 1.53781 * 113.61359 * 107.50286 * 13 12 10 16 16 C 1.53785 * 87.08047 * 89.11689 * 15 13 12 17 17 H 1.09002 * 113.68746 * 270.87144 * 16 15 13 18 18 N 1.46899 * 113.61491 * 139.98148 * 16 15 13 19 19 C 1.46905 * 110.99734 * 107.50145 * 18 16 15 20 20 C 1.50704 * 109.46712 * 180.02562 * 19 18 16 21 21 O 1.21287 * 120.00186 * 359.97438 * 20 19 18 22 22 N 1.34776 * 119.99879 * 180.02562 * 20 19 18 23 23 C 1.37096 * 120.00240 * 180.02562 * 22 20 19 24 24 H 1.08011 * 119.99924 * 359.97438 * 23 22 20 25 25 C 1.38951 * 120.00236 * 179.97438 * 23 22 20 26 26 N 1.31404 * 120.00008 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99923 * 180.27234 * 25 23 22 28 28 H 1.48502 * 109.46918 * 179.72701 * 27 25 23 29 29 H 1.48505 * 109.47009 * 299.72176 * 27 25 23 30 30 H 1.48499 * 109.47143 * 59.72328 * 27 25 23 31 31 C 1.53780 * 87.08372 * 25.42870 * 16 15 13 32 32 H 1.09006 * 109.47143 * 59.99765 * 1 2 3 33 33 H 1.08995 * 109.47423 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47255 * 300.00315 * 1 2 3 35 35 H 1.09010 * 117.49970 * 145.02336 * 7 5 3 36 36 H 1.09002 * 117.50114 * 0.02562 * 7 5 3 37 37 H 0.97003 * 120.00133 * 359.97438 * 12 10 8 38 38 H 1.09001 * 113.61480 * 334.56538 * 15 13 12 39 39 H 1.08999 * 113.61370 * 203.66043 * 15 13 12 40 40 H 1.00895 * 111.00124 * 231.44974 * 18 16 15 41 41 H 1.08995 * 109.47583 * 60.00104 * 19 18 16 42 42 H 1.08999 * 109.46919 * 299.99745 * 19 18 16 43 43 H 0.96999 * 119.99980 * 359.97438 * 22 20 19 44 44 H 0.96997 * 120.00014 * 180.02562 * 26 25 23 45 45 H 1.09005 * 113.61168 * 89.11624 * 31 16 15 46 46 H 1.08993 * 113.61598 * 219.93730 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 1 4.0601 0.8334 0.8663 7 6 4.2089 2.5153 -0.6231 8 6 4.2796 1.1703 -1.3489 9 1 5.2425 0.6600 -1.3710 10 6 3.4236 0.9965 -2.5769 11 8 3.1121 1.9626 -3.2407 12 7 3.0041 -0.2325 -2.9375 13 6 2.1714 -0.4014 -4.1310 14 1 1.6262 0.5037 -4.3983 15 6 2.9129 -1.0479 -5.3130 16 6 2.4693 -2.4069 -4.7461 17 1 3.1696 -2.8307 -4.0262 18 7 2.0592 -3.3692 -5.7774 19 6 3.0631 -4.4297 -5.9370 20 6 2.6090 -5.3952 -7.0013 21 8 1.5528 -5.2176 -7.5705 22 7 3.3761 -6.4566 -7.3199 23 6 2.9632 -7.3346 -8.2885 24 1 2.0231 -7.1761 -8.7959 25 6 3.7543 -8.4286 -8.6173 26 7 4.8984 -8.6213 -8.0003 27 14 3.1954 -9.6208 -9.9424 28 1 4.2127 -10.6900 -10.1074 29 1 1.8990 -10.2278 -9.5472 30 1 3.0301 -8.8924 -11.2259 31 6 1.2918 -1.6624 -4.0949 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 5.1256 2.8902 -0.1676 36 1 3.5432 3.2746 -1.0334 37 1 3.2536 -1.0053 -2.4068 38 1 3.9919 -0.8953 -5.2877 39 1 2.4742 -0.8155 -6.2833 40 1 1.1521 -3.7585 -5.5685 41 1 3.1846 -4.9602 -4.9926 42 1 4.0152 -3.9875 -6.2304 43 1 4.2206 -6.5988 -6.8645 44 1 5.4508 -9.3848 -8.2302 45 1 0.4099 -1.5979 -4.7323 46 1 1.0612 -2.0068 -3.0869 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265468392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:27 Heat of formation + Delta-G solvation = -130.606966 kcal Electronic energy + Delta-G solvation = -28882.153126 eV Core-core repulsion = 24579.579798 eV Total energy + Delta-G solvation = -4302.573329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.01389 -41.13995 -40.20436 -39.54868 -37.89861 -36.97280 -36.12880 -35.41718 -33.53251 -33.16233 -29.19365 -28.55359 -26.72027 -26.66617 -25.85092 -25.13929 -23.60200 -21.84770 -21.29117 -21.06662 -20.31940 -19.88071 -19.28119 -18.19169 -17.94778 -17.75096 -17.24414 -16.89947 -16.78929 -16.40451 -16.37191 -16.13334 -15.64191 -15.53145 -15.25217 -15.02537 -14.78196 -14.29484 -14.17381 -14.11376 -13.51568 -13.42711 -13.27518 -13.21702 -13.09812 -12.96707 -12.88036 -12.60181 -12.42436 -12.12128 -11.98066 -11.87297 -11.71947 -11.56221 -11.53180 -11.48881 -11.47536 -11.04029 -10.32814 -10.11394 -10.00982 -9.29201 -8.46056 -5.94661 0.94121 1.37299 1.40251 1.42332 1.53017 1.55228 2.00849 2.06516 2.29803 2.58022 2.97395 3.21423 3.41588 3.48040 3.53807 3.56923 3.63627 3.69535 3.87092 3.96993 4.13143 4.22639 4.25202 4.29368 4.31570 4.49348 4.55210 4.61295 4.65299 4.71016 4.80380 4.84400 4.85800 4.98923 5.03254 5.07864 5.12981 5.27972 5.41319 5.52508 5.94141 6.17790 6.44780 6.45947 6.59106 6.61157 7.13372 7.15044 7.57359 8.12843 8.71033 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023403 B = 0.001808 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.161519 B =15480.722603 C =15731.057716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.348 6.348 3 C 0.477 3.523 4 O -0.538 6.538 5 C -0.137 4.137 6 H 0.195 0.805 7 C -0.119 4.119 8 C -0.157 4.157 9 H 0.188 0.812 10 C 0.527 3.473 11 O -0.580 6.580 12 N -0.688 5.688 13 C 0.123 3.877 14 H 0.081 0.919 15 C -0.136 4.136 16 C 0.064 3.936 17 H 0.094 0.906 18 N -0.672 5.672 19 C 0.066 3.934 20 C 0.436 3.564 21 O -0.625 6.625 22 N -0.573 5.573 23 C -0.335 4.335 24 H 0.078 0.922 25 C -0.013 4.013 26 N -0.919 5.919 27 Si 0.992 3.008 28 H -0.270 1.270 29 H -0.271 1.271 30 H -0.274 1.274 31 C -0.132 4.132 32 H 0.049 0.951 33 H 0.134 0.866 34 H 0.064 0.936 35 H 0.159 0.841 36 H 0.080 0.920 37 H 0.419 0.581 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.347 0.653 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.098 0.902 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.593 16.135 22.897 28.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.264 6.264 3 C 0.321 3.679 4 O -0.427 6.427 5 C -0.156 4.156 6 H 0.212 0.788 7 C -0.156 4.156 8 C -0.178 4.178 9 H 0.205 0.795 10 C 0.314 3.686 11 O -0.459 6.459 12 N -0.339 5.339 13 C 0.017 3.983 14 H 0.099 0.901 15 C -0.176 4.176 16 C -0.046 4.046 17 H 0.112 0.888 18 N -0.305 5.305 19 C -0.067 4.067 20 C 0.224 3.776 21 O -0.511 6.511 22 N -0.211 5.211 23 C -0.464 4.464 24 H 0.096 0.904 25 C -0.213 4.213 26 N -0.560 5.560 27 Si 0.816 3.184 28 H -0.195 1.195 29 H -0.196 1.196 30 H -0.199 1.199 31 C -0.171 4.171 32 H 0.068 0.932 33 H 0.152 0.848 34 H 0.083 0.917 35 H 0.177 0.823 36 H 0.099 0.901 37 H 0.256 0.744 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.167 0.833 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.116 0.884 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.813 17.411 21.503 27.680 hybrid contribution -0.296 -1.401 0.121 1.437 sum 0.516 16.010 21.624 26.911 Atomic orbital electron populations 1.23512 0.75112 1.05726 1.02043 1.86483 1.24467 1.32136 1.83279 1.23369 0.91887 0.81353 0.71308 1.90693 1.67870 1.37863 1.46297 1.22119 0.86199 1.07278 0.99983 0.78806 1.23255 1.03611 0.89817 0.98960 1.22555 1.01944 1.05460 0.87838 0.79476 1.20347 0.79593 0.82737 0.85967 1.90732 1.58232 1.40943 1.56010 1.45524 1.51661 1.09072 1.27675 1.21581 0.92788 0.98235 0.85745 0.90079 1.23503 1.00579 0.95375 0.98158 1.23201 0.98030 0.91389 0.91986 0.88830 1.60174 1.04991 1.17176 1.48173 1.21590 0.97003 0.91725 0.96338 1.20960 0.85654 0.83597 0.87409 1.90491 1.26300 1.76561 1.57787 1.41935 1.21200 1.22606 1.35320 1.19621 1.06115 1.04867 1.15824 0.90411 1.26027 0.95397 0.99346 1.00507 1.69655 1.12238 1.31056 1.43074 0.85004 0.78084 0.77416 0.77925 1.19461 1.19615 1.19905 1.23495 0.97369 0.93802 1.02403 0.93201 0.84835 0.91748 0.82280 0.90116 0.74372 0.91369 0.89995 0.83279 0.91000 0.88260 0.76925 0.91280 0.88395 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.55 16 2 O -0.35 -5.10 10.56 -51.37 -0.54 -5.64 16 3 C 0.48 8.44 6.65 71.24 0.47 8.92 16 4 O -0.54 -13.98 16.35 21.96 0.36 -13.62 16 5 C -0.14 -1.26 6.29 -11.54 -0.07 -1.33 16 6 H 0.19 0.12 8.14 -2.39 -0.02 0.10 16 7 C -0.12 -1.29 9.56 30.59 0.29 -1.00 16 8 C -0.16 -1.56 6.18 -11.54 -0.07 -1.63 16 9 H 0.19 0.34 8.14 -2.39 -0.02 0.32 16 10 C 0.53 10.22 6.52 87.66 0.57 10.79 16 11 O -0.58 -17.37 16.20 -3.03 -0.05 -17.42 16 12 N -0.69 -10.55 5.26 -440.03 -2.32 -12.87 16 13 C 0.12 2.37 4.32 45.52 0.20 2.57 16 14 H 0.08 1.98 7.46 -2.39 -0.02 1.96 16 15 C -0.14 -2.98 7.68 31.12 0.24 -2.74 16 16 C 0.06 1.28 4.02 45.44 0.18 1.46 16 17 H 0.09 1.50 7.87 -2.39 -0.02 1.48 16 18 N -0.67 -19.70 6.18 -492.84 -3.05 -22.75 16 19 C 0.07 2.13 6.01 85.56 0.51 2.64 16 20 C 0.44 20.37 7.82 87.66 0.69 21.06 16 21 O -0.62 -34.34 15.78 -3.05 -0.05 -34.39 16 22 N -0.57 -29.02 5.29 -306.98 -1.62 -30.64 16 23 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 24 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 25 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 26 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16 27 Si 0.99 42.63 29.55 68.60 2.03 44.65 16 28 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 29 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 30 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 31 C -0.13 -2.21 7.40 31.12 0.23 -1.98 16 32 H 0.05 0.76 8.13 -2.38 -0.02 0.74 16 33 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 35 H 0.16 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.08 1.54 7.71 -2.39 -0.02 1.52 16 37 H 0.42 3.92 8.70 -92.71 -0.81 3.12 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.35 10.59 8.25 -89.70 -0.74 9.85 16 41 H 0.07 1.94 8.13 -2.39 -0.02 1.92 16 42 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 43 H 0.40 18.94 7.90 -92.71 -0.73 18.20 16 44 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 45 H 0.10 1.80 8.14 -2.38 -0.02 1.79 16 46 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -82.46 398.77 -0.47 -82.93 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: -1.24 Total: 36.49 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 5.72 Total: 22.01 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -6.70 Total: -115.01 kcal Atomic # 8 Polarization: -70.79 SS G_CDS: -0.28 Total: -71.08 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -82.46 -0.47 -82.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265468392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.672 kcal (2) G-P(sol) polarization free energy of solvation -82.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds