Wall clock time and date at job start Tue Mar 31 2020 22:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86791 * 120.00237 * 2 1 4 4 H 1.48492 * 109.47556 * 270.00602 * 3 2 1 5 5 H 1.48507 * 109.47091 * 30.00573 * 3 2 1 6 6 H 1.48497 * 109.47215 * 149.99980 * 3 2 1 7 7 C 1.38814 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99824 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99945 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99592 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46533 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.49886 * 304.93780 * 11 10 9 13 13 C 1.53045 * 109.52001 * 184.85262 * 11 10 9 14 14 C 1.53036 * 109.53493 * 178.66919 * 13 11 10 15 15 C 1.52760 * 109.38699 * 61.24148 * 14 13 11 16 16 N 1.46926 * 109.00802 * 305.58920 * 15 14 13 17 17 C 1.34777 * 120.63182 * 233.57877 * 16 15 14 18 18 O 1.21545 * 120.00103 * 183.54939 * 17 16 15 19 19 C 1.47890 * 119.99536 * 3.55197 * 17 16 15 20 20 C 1.40605 * 119.72716 * 129.00458 * 19 17 16 21 21 C 1.35845 * 120.94897 * 180.02562 * 20 19 17 22 22 C 1.40484 * 119.88381 * 359.95695 * 21 20 19 23 23 C 1.40483 * 121.84079 * 179.97438 * 22 21 20 24 24 N 1.31215 * 119.94081 * 180.02562 * 23 22 21 25 25 C 1.32555 * 122.80360 * 359.71160 * 24 23 22 26 26 C 1.36227 * 121.84625 * 0.59759 * 25 24 23 27 27 C 1.40761 * 118.67243 * 359.42218 * 26 25 24 28 28 C 1.38526 * 119.73133 * 309.02332 * 19 17 16 29 29 C 1.46932 * 118.73575 * 53.30496 * 16 15 14 30 30 H 0.96998 * 120.00096 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00038 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47266 * 60.00165 * 10 9 7 33 33 H 1.08997 * 109.47515 * 299.99415 * 10 9 7 34 34 H 1.08997 * 109.46220 * 298.68837 * 13 11 10 35 35 H 1.09001 * 109.45963 * 58.66289 * 13 11 10 36 36 H 1.09004 * 109.49832 * 181.31965 * 14 13 11 37 37 H 1.09004 * 109.50248 * 301.38070 * 14 13 11 38 38 H 1.08995 * 109.51334 * 185.70226 * 15 14 13 39 39 H 1.09006 * 109.43024 * 65.42269 * 15 14 13 40 40 H 1.08006 * 119.52152 * 359.97438 * 20 19 17 41 41 H 1.08004 * 120.05750 * 180.02562 * 21 20 19 42 42 H 1.07999 * 120.02811 * 0.05692 * 23 22 21 43 43 H 1.07997 * 119.07931 * 180.31285 * 25 24 23 44 44 H 1.07994 * 120.66176 * 179.69824 * 26 25 24 45 45 H 1.07993 * 120.36403 * 359.97438 * 28 19 17 46 46 H 1.08998 * 109.58680 * 66.43479 * 29 16 15 47 47 H 1.09004 * 109.58393 * 186.71272 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6163 -2.1914 -0.0024 12 1 5.8658 -1.5468 -0.8451 13 6 6.3817 -3.5111 -0.1244 14 6 7.8854 -3.2293 -0.1591 15 6 8.3034 -2.5461 1.1417 16 7 7.4701 -1.3532 1.3449 17 6 8.0358 -0.1484 1.5575 18 8 7.3369 0.8188 1.7884 19 6 9.5068 -0.0036 1.5100 20 6 10.0830 1.0011 0.7128 21 6 11.4311 1.1561 0.6503 22 6 12.2686 0.3049 1.3904 23 6 13.6676 0.4280 1.3559 24 7 14.4144 -0.3877 2.0619 25 6 13.9078 -1.3422 2.8296 26 6 12.5649 -1.5487 2.9278 27 6 11.6980 -0.7125 2.1993 28 6 10.3057 -0.8590 2.2508 29 6 6.0084 -1.4975 1.3058 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3622 -0.0014 32 1 3.8484 -3.0428 -0.8908 33 1 3.8491 -3.0424 0.8891 34 1 6.1507 -4.1453 0.7315 35 1 6.0862 -4.0187 -1.0427 36 1 8.4290 -4.1676 -0.2696 37 1 8.1138 -2.5754 -1.0008 38 1 9.3515 -2.2533 1.0787 39 1 8.1639 -3.2354 1.9745 40 1 9.4445 1.6586 0.1413 41 1 11.8584 1.9330 0.0335 42 1 14.1279 1.1938 0.7491 43 1 14.5787 -1.9769 3.3895 44 1 12.1731 -2.3353 3.5555 45 1 9.8601 -1.6297 2.8622 46 1 5.6780 -2.0996 2.1522 47 1 5.5427 -0.5132 1.3537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265630847.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:49 Heat of formation + Delta-G solvation = 35.597879 kcal Electronic energy + Delta-G solvation = -28841.588913 eV Core-core repulsion = 24989.364782 eV Total energy + Delta-G solvation = -3852.224132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.42990 -40.27690 -38.07442 -37.19963 -35.20133 -33.60721 -33.00422 -31.91199 -31.65879 -30.40878 -29.91312 -26.42214 -25.84349 -24.64795 -23.97147 -23.09732 -22.66586 -21.38315 -20.73625 -19.62811 -18.33264 -17.87152 -17.44474 -17.34818 -16.42727 -16.11771 -15.40619 -15.26620 -14.94866 -14.73358 -14.58895 -14.44618 -14.22671 -14.05028 -13.88491 -13.53835 -13.15130 -13.13594 -12.99592 -12.93040 -12.63429 -12.44426 -12.43341 -11.69200 -11.57515 -11.43362 -11.23605 -10.95896 -10.75987 -10.65822 -10.52447 -10.33365 -10.14464 -10.04559 -9.86501 -9.55194 -9.45965 -8.89282 -8.72401 -8.52840 -7.21607 -5.74564 -3.10381 -0.20978 0.31941 1.39255 2.24762 2.64525 2.92230 3.43266 3.50221 3.51962 3.59498 3.93069 4.01739 4.08164 4.31340 4.36579 4.53177 4.59675 4.62913 4.63569 4.75581 4.81018 4.83492 5.01763 5.08920 5.14704 5.17162 5.21995 5.30201 5.43666 5.48707 5.56344 5.58792 5.60506 5.68683 5.76205 5.79382 5.84249 5.87782 5.96077 5.98526 6.13013 6.23625 6.26225 6.29273 6.42124 6.63096 6.72289 7.22843 7.50946 7.97411 8.00630 8.44276 9.23114 9.95932 10.14927 11.43604 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.002635 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.395875 B =10621.896676 C =11610.904356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.880 3.120 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.165 3.835 11 C -0.111 4.111 12 H 0.074 0.926 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.095 3.905 16 N -0.602 5.602 17 C 0.551 3.449 18 O -0.522 6.522 19 C -0.089 4.089 20 C -0.079 4.079 21 C -0.086 4.086 22 C -0.102 4.102 23 C 0.146 3.854 24 N -0.487 5.487 25 C 0.074 3.926 26 C -0.149 4.149 27 C -0.029 4.029 28 C -0.082 4.082 29 C 0.118 3.882 30 H 0.259 0.741 31 H 0.362 0.638 32 H 0.031 0.969 33 H 0.029 0.971 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.165 0.835 43 H 0.154 0.846 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.073 0.927 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.817 -5.898 3.049 31.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.710 3.290 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.037 3.963 11 C -0.131 4.131 12 H 0.092 0.908 13 C -0.150 4.150 14 C -0.172 4.172 15 C -0.028 4.028 16 N -0.334 5.334 17 C 0.338 3.662 18 O -0.398 6.398 19 C -0.093 4.093 20 C -0.097 4.097 21 C -0.106 4.106 22 C -0.105 4.105 23 C -0.025 4.025 24 N -0.194 5.194 25 C -0.069 4.069 26 C -0.168 4.168 27 C -0.034 4.034 28 C -0.101 4.101 29 C -0.004 4.004 30 H 0.069 0.931 31 H 0.195 0.805 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.154 0.846 41 H 0.159 0.841 42 H 0.182 0.818 43 H 0.172 0.828 44 H 0.158 0.842 45 H 0.158 0.842 46 H 0.091 0.909 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 31.104 -5.509 3.266 31.756 hybrid contribution -0.482 1.050 0.045 1.156 sum 30.622 -4.459 3.311 31.121 Atomic orbital electron populations 1.69702 1.05103 1.25845 1.57536 1.24660 0.95229 0.97211 1.01903 0.86613 0.79602 0.84962 0.77865 1.21122 1.21658 1.19836 1.19035 0.80592 0.94695 1.43167 0.89205 1.42769 1.04134 1.02207 1.91183 1.20614 0.87234 0.89470 0.98940 1.21752 0.97015 0.96731 0.97586 0.90784 1.21517 0.93662 0.97141 1.02699 1.21842 0.97266 1.00684 0.97421 1.21996 0.95474 0.86943 0.98372 1.48127 1.07916 1.07177 1.70223 1.18378 0.87269 0.83085 0.77465 1.90868 1.63224 1.37949 1.47791 1.20072 0.93435 0.96859 0.98956 1.20883 0.95233 0.96241 0.97365 1.20916 0.92889 0.98439 0.98340 1.19145 0.95593 0.97020 0.98703 1.23268 0.88755 0.95879 0.94622 1.67404 1.41238 1.04379 1.06412 1.22208 0.93452 0.95181 0.96046 1.21966 0.94545 1.00145 1.00161 1.18069 0.93540 0.95331 0.96462 1.21435 0.91824 0.98188 0.98623 1.21808 0.77381 1.03403 0.97763 0.93069 0.80534 0.95069 0.95343 0.91479 0.91179 0.90632 0.91499 0.89334 0.90971 0.84557 0.84134 0.81750 0.82836 0.84179 0.84190 0.90902 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.86 13.97 55.49 0.78 -29.08 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 23.08 27.73 -169.99 -4.71 18.37 16 4 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 5 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.27 -6.95 6.52 56.52 0.37 -6.58 16 7 C -0.25 -7.04 10.47 -15.06 -0.16 -7.20 16 8 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 9 N -0.76 -18.21 5.18 -59.90 -0.31 -18.52 16 10 C 0.17 3.09 5.66 -4.04 -0.02 3.07 16 11 C -0.11 -1.64 2.37 -90.50 -0.21 -1.85 16 12 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.11 -1.21 5.17 -26.69 -0.14 -1.35 16 14 C -0.13 -1.17 6.06 -26.84 -0.16 -1.33 16 15 C 0.09 0.84 5.33 -3.93 -0.02 0.81 16 16 N -0.60 -7.68 2.98 -174.13 -0.52 -8.20 16 17 C 0.55 7.92 7.21 -12.31 -0.09 7.83 16 18 O -0.52 -9.93 16.47 5.33 0.09 -9.84 16 19 C -0.09 -0.98 5.00 -104.95 -0.52 -1.50 16 20 C -0.08 -0.77 9.62 -39.55 -0.38 -1.15 16 21 C -0.09 -0.66 9.77 -39.59 -0.39 -1.05 16 22 C -0.10 -0.85 5.75 -106.78 -0.61 -1.46 16 23 C 0.15 1.10 11.04 -16.97 -0.19 0.91 16 24 N -0.49 -4.28 10.29 -13.15 -0.14 -4.42 16 25 C 0.07 0.54 11.07 -17.96 -0.20 0.34 16 26 C -0.15 -1.02 9.88 -39.35 -0.39 -1.41 16 27 C -0.03 -0.24 5.74 -106.83 -0.61 -0.86 16 28 C -0.08 -0.72 7.14 -38.78 -0.28 -1.00 16 29 C 0.12 1.80 5.51 -3.71 -0.02 1.78 16 30 H 0.26 7.90 8.31 -40.82 -0.34 7.57 16 31 H 0.36 8.72 4.76 -40.82 -0.19 8.53 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.67 4.59 -51.93 -0.24 0.43 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 41 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 42 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 45 H 0.14 0.99 7.08 -52.49 -0.37 0.62 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.10 1.89 6.23 -51.93 -0.32 1.57 16 LS Contribution 378.24 15.07 5.70 5.70 Total: -1.00 -36.30 378.24 -10.25 -46.55 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.64 Total: 4.76 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -4.49 Total: -5.32 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.19 Total: -60.21 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.71 Total: 18.37 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.30 -10.25 -46.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265630847.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.146 kcal (2) G-P(sol) polarization free energy of solvation -36.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds