Wall clock time and date at job start Tue Mar 31 2020 22:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86791 * 120.00237 * 2 1 4 4 H 1.48492 * 109.47556 * 270.00602 * 3 2 1 5 5 H 1.48507 * 109.47091 * 30.00573 * 3 2 1 6 6 H 1.48497 * 109.47215 * 149.99980 * 3 2 1 7 7 C 1.38814 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99824 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99945 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99592 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46533 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.49886 * 304.93780 * 11 10 9 13 13 C 1.53045 * 109.52001 * 184.85262 * 11 10 9 14 14 C 1.53036 * 109.53493 * 178.66919 * 13 11 10 15 15 C 1.52760 * 109.38699 * 61.24148 * 14 13 11 16 16 N 1.46926 * 109.00802 * 305.58920 * 15 14 13 17 17 C 1.34777 * 120.63182 * 233.57877 * 16 15 14 18 18 O 1.21545 * 120.00103 * 183.54939 * 17 16 15 19 19 C 1.47890 * 119.99536 * 3.55197 * 17 16 15 20 20 C 1.40605 * 119.72716 * 129.00458 * 19 17 16 21 21 C 1.35845 * 120.94897 * 180.02562 * 20 19 17 22 22 C 1.40484 * 119.88381 * 359.95695 * 21 20 19 23 23 C 1.40483 * 121.84079 * 179.97438 * 22 21 20 24 24 N 1.31215 * 119.94081 * 180.02562 * 23 22 21 25 25 C 1.32555 * 122.80360 * 359.71160 * 24 23 22 26 26 C 1.36227 * 121.84625 * 0.59759 * 25 24 23 27 27 C 1.40761 * 118.67243 * 359.42218 * 26 25 24 28 28 C 1.38526 * 119.73133 * 309.02332 * 19 17 16 29 29 C 1.46932 * 118.73575 * 53.30496 * 16 15 14 30 30 H 0.96998 * 120.00096 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00038 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47266 * 60.00165 * 10 9 7 33 33 H 1.08997 * 109.47515 * 299.99415 * 10 9 7 34 34 H 1.08997 * 109.46220 * 298.68837 * 13 11 10 35 35 H 1.09001 * 109.45963 * 58.66289 * 13 11 10 36 36 H 1.09004 * 109.49832 * 181.31965 * 14 13 11 37 37 H 1.09004 * 109.50248 * 301.38070 * 14 13 11 38 38 H 1.08995 * 109.51334 * 185.70226 * 15 14 13 39 39 H 1.09006 * 109.43024 * 65.42269 * 15 14 13 40 40 H 1.08006 * 119.52152 * 359.97438 * 20 19 17 41 41 H 1.08004 * 120.05750 * 180.02562 * 21 20 19 42 42 H 1.07999 * 120.02811 * 0.05692 * 23 22 21 43 43 H 1.07997 * 119.07931 * 180.31285 * 25 24 23 44 44 H 1.07994 * 120.66176 * 179.69824 * 26 25 24 45 45 H 1.07993 * 120.36403 * 359.97438 * 28 19 17 46 46 H 1.08998 * 109.58680 * 66.43479 * 29 16 15 47 47 H 1.09004 * 109.58393 * 186.71272 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6163 -2.1914 -0.0024 12 1 5.8658 -1.5468 -0.8451 13 6 6.3817 -3.5111 -0.1244 14 6 7.8854 -3.2293 -0.1591 15 6 8.3034 -2.5461 1.1417 16 7 7.4701 -1.3532 1.3449 17 6 8.0358 -0.1484 1.5575 18 8 7.3369 0.8188 1.7884 19 6 9.5068 -0.0036 1.5100 20 6 10.0830 1.0011 0.7128 21 6 11.4311 1.1561 0.6503 22 6 12.2686 0.3049 1.3904 23 6 13.6676 0.4280 1.3559 24 7 14.4144 -0.3877 2.0619 25 6 13.9078 -1.3422 2.8296 26 6 12.5649 -1.5487 2.9278 27 6 11.6980 -0.7125 2.1993 28 6 10.3057 -0.8590 2.2508 29 6 6.0084 -1.4975 1.3058 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3622 -0.0014 32 1 3.8484 -3.0428 -0.8908 33 1 3.8491 -3.0424 0.8891 34 1 6.1507 -4.1453 0.7315 35 1 6.0862 -4.0187 -1.0427 36 1 8.4290 -4.1676 -0.2696 37 1 8.1138 -2.5754 -1.0008 38 1 9.3515 -2.2533 1.0787 39 1 8.1639 -3.2354 1.9745 40 1 9.4445 1.6586 0.1413 41 1 11.8584 1.9330 0.0335 42 1 14.1279 1.1938 0.7491 43 1 14.5787 -1.9769 3.3895 44 1 12.1731 -2.3353 3.5555 45 1 9.8601 -1.6297 2.8622 46 1 5.6780 -2.0996 2.1522 47 1 5.5427 -0.5132 1.3537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265630847.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:48 Heat of formation + Delta-G solvation = 12.075571 kcal Electronic energy + Delta-G solvation = -28842.608917 eV Core-core repulsion = 24989.364782 eV Total energy + Delta-G solvation = -3853.244135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.13800 -41.16574 -39.10873 -38.01112 -36.81600 -34.68600 -34.00047 -33.32781 -32.53445 -31.74735 -30.67847 -27.64234 -27.08009 -25.34913 -24.75618 -24.51731 -23.36812 -22.65693 -21.92836 -20.60127 -19.71461 -18.99586 -18.49419 -18.06518 -17.30654 -16.95791 -16.70121 -16.30448 -16.01593 -15.92670 -15.73983 -15.33465 -15.20539 -15.03983 -14.72935 -14.60587 -14.44511 -14.20532 -14.10458 -13.91806 -13.76579 -13.53996 -13.37054 -13.21317 -12.98452 -12.68237 -12.29070 -12.15726 -12.06958 -11.93570 -11.87754 -11.64239 -11.43867 -11.26396 -11.07956 -11.03573 -10.49466 -10.17790 -9.77211 -9.33536 -9.10054 -8.08225 -5.40033 -0.80730 -0.31941 0.81231 1.31074 1.34642 1.35402 1.40967 1.73878 2.08515 2.41368 3.01305 3.20693 3.23763 3.47389 3.51404 3.53820 3.73240 3.78113 3.79661 3.83006 3.94680 4.00440 4.03295 4.09733 4.23533 4.30686 4.37310 4.54166 4.55813 4.62339 4.69531 4.72400 4.73967 4.81435 4.86916 4.92212 5.00281 5.02591 5.06426 5.16774 5.17702 5.23882 5.29431 5.40059 5.45889 5.57761 5.70834 5.71713 6.16859 6.23327 6.92427 6.98465 7.02688 7.80219 7.96469 9.13287 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.002635 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.395875 B =10621.896676 C =11610.904356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.057 4.057 3 Si 0.944 3.056 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.268 1.268 7 C -0.229 4.229 8 H 0.065 0.935 9 N -0.762 5.762 10 C 0.160 3.840 11 C -0.098 4.098 12 H 0.060 0.940 13 C -0.107 4.107 14 C -0.127 4.127 15 C 0.089 3.911 16 N -0.597 5.597 17 C 0.547 3.453 18 O -0.584 6.584 19 C -0.107 4.107 20 C -0.101 4.101 21 C -0.071 4.071 22 C -0.112 4.112 23 C 0.145 3.855 24 N -0.509 5.509 25 C 0.065 3.935 26 C -0.144 4.144 27 C -0.042 4.042 28 C -0.069 4.069 29 C 0.121 3.879 30 H 0.258 0.742 31 H 0.361 0.639 32 H 0.035 0.965 33 H 0.033 0.967 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.057 0.943 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.125 0.875 41 H 0.170 0.830 42 H 0.191 0.809 43 H 0.177 0.823 44 H 0.168 0.832 45 H 0.159 0.841 46 H 0.080 0.920 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.900 -7.525 3.308 35.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.249 4.249 3 Si 0.772 3.228 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.361 4.361 8 H 0.083 0.917 9 N -0.408 5.408 10 C 0.034 3.966 11 C -0.118 4.118 12 H 0.078 0.922 13 C -0.145 4.145 14 C -0.165 4.165 15 C -0.031 4.031 16 N -0.328 5.328 17 C 0.336 3.664 18 O -0.464 6.464 19 C -0.111 4.111 20 C -0.120 4.120 21 C -0.090 4.090 22 C -0.115 4.115 23 C -0.027 4.027 24 N -0.217 5.217 25 C -0.077 4.077 26 C -0.164 4.164 27 C -0.047 4.047 28 C -0.088 4.088 29 C -0.002 4.002 30 H 0.067 0.933 31 H 0.194 0.806 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.076 0.924 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.143 0.857 41 H 0.187 0.813 42 H 0.208 0.792 43 H 0.194 0.806 44 H 0.185 0.815 45 H 0.176 0.824 46 H 0.098 0.902 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 35.256 -7.206 3.510 36.156 hybrid contribution -1.654 1.416 -0.008 2.178 sum 33.602 -5.790 3.502 34.276 Atomic orbital electron populations 1.69847 1.06707 1.26542 1.59899 1.25356 0.96000 1.00577 1.02998 0.85579 0.78304 0.80836 0.78061 1.20326 1.21889 1.19314 1.19077 0.82624 0.93583 1.40767 0.91700 1.42872 1.02701 1.04300 1.90931 1.20849 0.89553 0.87200 0.99005 1.21610 0.94554 0.98962 0.96664 0.92194 1.21512 0.94624 0.94559 1.03761 1.21836 0.95752 1.02109 0.96847 1.22348 0.95629 0.85624 0.99521 1.48197 1.07109 1.08248 1.69205 1.18973 0.88633 0.82583 0.76236 1.90822 1.64904 1.39958 1.50745 1.19847 0.91258 0.98794 1.01224 1.20893 0.96182 0.96612 0.98331 1.21158 0.91774 0.98440 0.97676 1.19370 0.96169 0.97143 0.98779 1.23685 0.88401 0.96111 0.94469 1.67457 1.41985 1.05126 1.07098 1.22657 0.94202 0.95047 0.95797 1.22240 0.94139 1.00234 0.99764 1.18297 0.93530 0.95916 0.96940 1.21547 0.91848 0.97729 0.97660 1.21551 0.79206 1.01042 0.98365 0.93274 0.80599 0.94737 0.94857 0.90052 0.90421 0.87119 0.92416 0.87669 0.88465 0.85676 0.81287 0.79223 0.80631 0.81452 0.82383 0.90166 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.40 13.97 21.65 0.30 -64.10 16 2 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 3 Si 0.94 49.25 27.73 68.60 1.90 51.15 16 4 H -0.28 -14.01 7.11 99.48 0.71 -13.31 16 5 H -0.29 -15.26 7.11 99.48 0.71 -14.56 16 6 H -0.27 -13.61 6.52 99.48 0.65 -12.96 16 7 C -0.23 -13.50 10.47 84.03 0.88 -12.62 16 8 H 0.07 4.08 8.06 -2.91 -0.02 4.06 16 9 N -0.76 -37.25 5.18 -343.43 -1.78 -39.03 16 10 C 0.16 5.97 5.66 86.38 0.49 6.46 16 11 C -0.10 -2.82 2.37 -10.71 -0.03 -2.85 16 12 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 13 C -0.11 -1.99 5.17 30.62 0.16 -1.83 16 14 C -0.13 -1.76 6.06 30.53 0.19 -1.57 16 15 C 0.09 1.29 5.33 86.22 0.46 1.75 16 16 N -0.60 -14.74 2.98 -823.09 -2.45 -17.19 16 17 C 0.55 15.97 7.21 86.80 0.63 16.59 16 18 O -0.58 -23.46 16.47 -3.86 -0.06 -23.52 16 19 C -0.11 -2.28 5.00 -20.08 -0.10 -2.38 16 20 C -0.10 -1.97 9.62 22.29 0.21 -1.75 16 21 C -0.07 -0.96 9.77 22.26 0.22 -0.74 16 22 C -0.11 -1.58 5.75 -21.26 -0.12 -1.71 16 23 C 0.14 1.77 11.04 85.33 0.94 2.72 16 24 N -0.51 -7.57 10.29 -195.50 -2.01 -9.58 16 25 C 0.07 0.74 11.07 84.12 0.93 1.67 16 26 C -0.14 -1.47 9.88 22.42 0.22 -1.25 16 27 C -0.04 -0.59 5.74 -21.29 -0.12 -0.71 16 28 C -0.07 -1.06 7.14 22.79 0.16 -0.89 16 29 C 0.12 3.71 5.51 86.36 0.48 4.19 16 30 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 31 H 0.36 17.74 4.76 -92.71 -0.44 17.30 16 32 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.11 1.23 4.59 -2.39 -0.01 1.22 16 39 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 41 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 44 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 45 H 0.16 1.71 7.08 -2.91 -0.02 1.69 16 46 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.05 2.17 6.23 -2.39 -0.01 2.15 16 Total: -1.00 -83.11 378.24 2.45 -80.66 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.49 Total: 19.60 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 6.06 Total: 2.00 kcal Atomic # 7 Polarization: -123.96 SS G_CDS: -5.94 Total: -129.90 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.06 Total: -23.52 kcal Atomic # 14 Polarization: 49.25 SS G_CDS: 1.90 Total: 51.15 kcal Total: -83.11 2.45 -80.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265630847.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.740 kcal (2) G-P(sol) polarization free energy of solvation -83.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds