Wall clock time and date at job start Tue Mar 31 2020 22:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99875 * 2 1 4 4 H 1.48499 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47263 * 300.00193 * 3 2 1 6 6 H 1.48503 * 109.47134 * 60.00366 * 3 2 1 7 7 C 1.38809 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99840 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00030 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00176 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47464 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.49404 * 55.06536 * 11 10 9 13 13 C 1.53045 * 109.49712 * 175.16215 * 11 10 9 14 14 C 1.53041 * 109.53375 * 181.31623 * 13 11 10 15 15 C 1.53621 * 109.24373 * 298.51036 * 14 13 11 16 16 N 1.46919 * 108.54364 * 54.85996 * 15 14 13 17 17 C 1.34773 * 120.63617 * 126.36900 * 16 15 14 18 18 O 1.21546 * 120.00518 * 185.58506 * 17 16 15 19 19 C 1.47893 * 119.99534 * 5.58302 * 17 16 15 20 20 C 1.40600 * 119.72962 * 222.13419 * 19 17 16 21 21 C 1.35846 * 120.95325 * 179.97438 * 20 19 17 22 22 C 1.40492 * 119.87940 * 0.04314 * 21 20 19 23 23 C 1.40487 * 121.84135 * 179.97438 * 22 21 20 24 24 N 1.31204 * 119.94096 * 180.02562 * 23 22 21 25 25 C 1.32557 * 122.81026 * 359.97438 * 24 23 22 26 26 C 1.36229 * 121.83878 * 359.97438 * 25 24 23 27 27 C 1.40756 * 118.67882 * 0.02562 * 26 25 24 28 28 C 1.38529 * 119.73184 * 42.15601 * 19 17 16 29 29 C 1.46929 * 118.74005 * 306.09176 * 16 15 14 30 30 H 0.97003 * 119.99724 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00603 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.47250 * 60.00017 * 10 9 7 33 33 H 1.09004 * 109.47374 * 300.00668 * 10 9 7 34 34 H 1.08997 * 109.45911 * 301.33914 * 13 11 10 35 35 H 1.09006 * 109.45963 * 61.31257 * 13 11 10 36 36 H 1.09000 * 109.49744 * 58.59005 * 14 13 11 37 37 H 1.09000 * 109.49133 * 178.65195 * 14 13 11 38 38 H 1.09002 * 109.74100 * 295.12294 * 15 14 13 39 39 H 1.09000 * 109.66682 * 174.55418 * 15 14 13 40 40 H 1.08004 * 119.52498 * 0.02562 * 20 19 17 41 41 H 1.07998 * 120.06090 * 180.02562 * 21 20 19 42 42 H 1.07998 * 120.02511 * 359.97438 * 23 22 21 43 43 H 1.07997 * 119.08191 * 180.02562 * 25 24 23 44 44 H 1.08002 * 120.65570 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.35989 * 359.95561 * 28 19 17 46 46 H 1.08998 * 109.59216 * 173.64736 * 29 16 15 47 47 H 1.09003 * 109.58942 * 293.93376 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.3805 -4.7136 -0.8438 13 6 1.8245 -6.1421 -0.1229 14 6 0.8289 -7.3039 -0.1566 15 6 0.0305 -7.3248 1.1557 16 7 -0.5882 -6.0061 1.3472 17 6 -1.9141 -5.8940 1.5611 18 8 -2.4300 -4.7949 1.6169 19 6 -2.7413 -7.1086 1.7280 20 6 -3.9996 -7.1861 1.1055 21 6 -4.7797 -8.2898 1.2417 22 6 -4.3303 -9.3735 2.0146 23 6 -5.1031 -10.5345 2.1835 24 7 -4.6470 -11.5243 2.9141 25 6 -3.4668 -11.4880 3.5164 26 6 -2.6410 -10.4092 3.4148 27 6 -3.0612 -9.3068 2.6472 28 6 -2.2703 -8.1604 2.4966 29 6 0.2671 -4.8120 1.3073 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.6846 -3.7146 0.8895 33 1 2.6847 -3.7145 -0.8905 34 1 2.4116 -6.1400 -1.0412 35 1 2.4894 -6.2586 0.7330 36 1 0.1478 -7.1751 -0.9978 37 1 1.3702 -8.2435 -0.2673 38 1 0.6986 -7.5396 1.9897 39 1 -0.7457 -8.0880 1.1006 40 1 -4.3508 -6.3564 0.5099 41 1 -5.7437 -8.3341 0.7568 42 1 -6.0722 -10.6117 1.7130 43 1 -3.1506 -12.3376 4.1033 44 1 -1.6833 -10.3999 3.9140 45 1 -1.3031 -8.0979 2.9732 46 1 -0.3530 -3.9167 1.3523 47 1 0.9524 -4.8248 2.1549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265630848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:52 Heat of formation + Delta-G solvation = 9.833369 kcal Electronic energy + Delta-G solvation = -28690.261525 eV Core-core repulsion = 24836.920160 eV Total energy + Delta-G solvation = -3853.341365 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.11864 -41.12593 -39.03658 -37.98098 -36.66083 -34.68627 -33.95523 -33.12121 -32.46555 -31.42569 -30.61013 -27.46891 -27.03123 -25.32466 -24.97147 -24.57300 -23.36707 -22.68424 -21.79313 -20.57965 -19.22829 -18.94066 -18.46090 -18.04758 -17.20641 -16.92563 -16.71831 -16.30802 -15.96445 -15.82132 -15.42957 -15.37562 -15.18901 -15.16216 -14.72575 -14.55563 -14.27792 -14.13413 -14.07339 -13.88272 -13.69351 -13.46329 -13.16087 -13.04297 -12.87692 -12.64445 -12.20330 -12.11233 -12.06115 -11.95781 -11.85495 -11.62164 -11.35212 -11.23899 -11.04450 -10.98244 -10.48262 -10.17260 -9.72174 -9.08499 -9.02684 -7.95952 -5.26586 -0.80982 -0.31553 0.82047 1.40901 1.44348 1.46448 1.56583 1.79503 2.14412 2.54217 3.03099 3.24377 3.37149 3.48994 3.54834 3.68347 3.74624 3.80640 3.86398 3.87636 4.00443 4.02982 4.06752 4.20158 4.26978 4.32811 4.42097 4.55576 4.57355 4.64120 4.73296 4.74447 4.76513 4.85535 4.88607 4.93177 5.02303 5.04646 5.08544 5.19075 5.19981 5.26279 5.32992 5.44446 5.46033 5.49964 5.59340 5.72337 6.24703 6.28623 6.98864 6.99496 7.30050 8.06691 8.28477 9.27810 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021731 B = 0.002338 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.171112 B =11971.511179 C =12794.434522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.978 3.022 4 H -0.261 1.261 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.749 5.749 10 C 0.158 3.842 11 C -0.094 4.094 12 H 0.048 0.952 13 C -0.105 4.105 14 C -0.128 4.128 15 C 0.091 3.909 16 N -0.598 5.598 17 C 0.543 3.457 18 O -0.583 6.583 19 C -0.110 4.110 20 C -0.100 4.100 21 C -0.073 4.073 22 C -0.111 4.111 23 C 0.144 3.856 24 N -0.508 5.508 25 C 0.065 3.935 26 C -0.143 4.143 27 C -0.044 4.044 28 C -0.066 4.066 29 C 0.127 3.873 30 H 0.250 0.750 31 H 0.370 0.630 32 H 0.030 0.970 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.123 0.877 41 H 0.170 0.830 42 H 0.191 0.809 43 H 0.178 0.822 44 H 0.169 0.831 45 H 0.160 0.840 46 H 0.050 0.950 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.100 -30.418 5.012 31.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.375 4.375 8 H 0.099 0.901 9 N -0.392 5.392 10 C 0.031 3.969 11 C -0.114 4.114 12 H 0.066 0.934 13 C -0.143 4.143 14 C -0.166 4.166 15 C -0.030 4.030 16 N -0.329 5.329 17 C 0.332 3.668 18 O -0.464 6.464 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.092 4.092 22 C -0.113 4.113 23 C -0.027 4.027 24 N -0.216 5.216 25 C -0.077 4.077 26 C -0.162 4.162 27 C -0.049 4.049 28 C -0.084 4.084 29 C 0.004 3.996 30 H 0.059 0.941 31 H 0.202 0.798 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.141 0.859 41 H 0.187 0.813 42 H 0.208 0.792 43 H 0.195 0.805 44 H 0.186 0.814 45 H 0.178 0.822 46 H 0.069 0.931 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.548 -30.586 5.240 31.363 hybrid contribution 0.276 2.678 -0.288 2.708 sum -4.272 -27.908 4.952 28.664 Atomic orbital electron populations 1.69885 1.06930 1.25959 1.59643 1.25688 0.96368 1.01537 1.03821 0.85011 0.78343 0.79454 0.76570 1.18488 1.22098 1.22165 1.19718 0.91620 0.85261 1.40910 0.90117 1.42703 1.05545 1.01546 1.89394 1.20855 0.93577 0.84151 0.98304 1.21541 0.96997 0.96460 0.96408 0.93365 1.21516 0.97697 0.91471 1.03652 1.21992 0.98015 0.99856 0.96696 1.22547 0.98436 0.82622 0.99393 1.48175 1.06149 1.09160 1.69464 1.19024 0.82457 0.89031 0.76240 1.90844 1.72965 1.29842 1.52726 1.19870 0.96051 0.93595 1.01936 1.20922 0.92609 0.99161 0.99198 1.21156 1.00562 0.90803 0.96706 1.19380 0.95446 0.97155 0.99324 1.23674 0.99492 0.86653 0.92857 1.67452 1.15876 1.30012 1.08240 1.22664 0.89269 0.98736 0.97058 1.22246 1.02592 0.92688 0.98702 1.18308 0.94009 0.95065 0.97484 1.21628 1.00017 0.90350 0.96412 1.21462 0.92774 0.87238 0.98086 0.94146 0.79850 0.95204 0.95489 0.90616 0.89829 0.92824 0.86946 0.88148 0.87773 0.85875 0.81272 0.79200 0.80537 0.81360 0.82247 0.93120 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.58 13.06 21.65 0.28 -63.29 16 2 C -0.08 -4.96 5.50 84.86 0.47 -4.50 16 3 Si 0.98 47.91 29.55 68.60 2.03 49.94 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 7 C -0.24 -14.11 9.99 84.03 0.84 -13.27 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.75 -40.14 5.38 -343.45 -1.85 -41.98 16 10 C 0.16 6.32 5.65 86.38 0.49 6.81 16 11 C -0.09 -3.07 2.38 -10.71 -0.03 -3.09 16 12 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 13 C -0.11 -2.22 5.17 30.62 0.16 -2.06 16 14 C -0.13 -2.06 6.10 30.82 0.19 -1.87 16 15 C 0.09 1.50 4.96 86.51 0.43 1.93 16 16 N -0.60 -16.60 2.97 -821.43 -2.44 -19.04 16 17 C 0.54 17.71 7.28 86.80 0.63 18.35 16 18 O -0.58 -26.00 16.36 -3.86 -0.06 -26.06 16 19 C -0.11 -2.63 5.08 -20.07 -0.10 -2.74 16 20 C -0.10 -2.20 9.54 22.29 0.21 -1.99 16 21 C -0.07 -1.12 9.77 22.26 0.22 -0.90 16 22 C -0.11 -1.72 5.75 -21.26 -0.12 -1.84 16 23 C 0.14 1.93 11.04 85.33 0.94 2.87 16 24 N -0.51 -7.98 10.29 -195.51 -2.01 -9.99 16 25 C 0.07 0.79 11.07 84.12 0.93 1.72 16 26 C -0.14 -1.59 9.88 22.42 0.22 -1.37 16 27 C -0.04 -0.68 5.74 -21.29 -0.12 -0.80 16 28 C -0.07 -1.12 7.17 22.79 0.16 -0.95 16 29 C 0.13 4.37 5.52 86.36 0.48 4.85 16 30 H 0.25 15.77 8.31 -92.71 -0.77 15.00 16 31 H 0.37 21.88 6.89 -92.71 -0.64 21.24 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.10 1.14 8.13 -2.39 -0.02 1.12 16 39 H 0.10 1.43 4.83 -2.39 -0.01 1.42 16 40 H 0.12 2.98 8.06 -2.91 -0.02 2.95 16 41 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.19 1.32 8.06 -2.91 -0.02 1.29 16 43 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 44 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 45 H 0.16 1.98 6.73 -2.91 -0.02 1.96 16 46 H 0.05 2.32 6.20 -2.39 -0.01 2.31 16 47 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -83.49 380.85 2.30 -81.20 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.35 Total: 28.09 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 5.99 Total: 1.14 kcal Atomic # 7 Polarization: -128.30 SS G_CDS: -6.01 Total: -134.31 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.06 Total: -26.06 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -83.49 2.30 -81.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265630848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.030 kcal (2) G-P(sol) polarization free energy of solvation -83.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds