Wall clock time and date at job start Tue Mar 31 2020 22:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 12 12 H 1.08996 * 110.88681 * 302.57294 * 11 10 9 13 13 C 1.55159 * 111.00328 * 66.45684 * 11 10 9 14 14 C 1.54324 * 102.94333 * 153.57938 * 13 11 10 15 15 N 1.47024 * 107.26681 * 337.80338 * 14 13 11 16 16 C 1.34779 * 125.64144 * 178.98815 * 15 14 13 17 17 O 1.21282 * 119.99433 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00253 * 359.97404 * 16 15 14 19 19 C 1.50710 * 109.46762 * 179.97438 * 18 16 15 20 20 C 1.39353 * 119.46556 * 269.72990 * 19 18 16 21 21 C 1.36141 * 120.86361 * 179.71475 * 20 19 18 22 22 C 1.40421 * 119.61426 * 0.55448 * 21 20 19 23 23 C 1.40774 * 121.37835 * 179.70426 * 22 21 20 24 24 C 1.36570 * 118.15428 * 180.02562 * 23 22 21 25 25 C 1.39324 * 119.93431 * 0.02562 * 24 23 22 26 26 N 1.31085 * 121.75267 * 359.97438 * 25 24 23 27 27 C 1.33687 * 121.31842 * 0.02562 * 26 25 24 28 28 C 1.36073 * 119.46145 * 90.00332 * 19 18 16 29 29 C 1.47419 * 108.70634 * 358.94381 * 15 14 13 30 30 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 32 32 H 1.09009 * 109.47454 * 300.27377 * 10 9 7 33 33 H 1.08998 * 109.47492 * 60.27672 * 10 9 7 34 34 H 1.09004 * 110.71465 * 271.93928 * 13 11 10 35 35 H 1.08996 * 110.72622 * 35.20996 * 13 11 10 36 36 H 1.09003 * 109.88379 * 97.22077 * 14 13 11 37 37 H 1.08996 * 109.87998 * 218.22956 * 14 13 11 38 38 H 1.08997 * 109.47116 * 299.99734 * 18 16 15 39 39 H 1.09000 * 109.47191 * 60.00203 * 18 16 15 40 40 H 1.08002 * 119.56889 * 359.97438 * 20 19 18 41 41 H 1.08001 * 120.19279 * 180.27846 * 21 20 19 42 42 H 1.08010 * 120.91919 * 0.02562 * 23 22 21 43 43 H 1.07999 * 120.03365 * 179.97438 * 24 23 22 44 44 H 1.08007 * 119.12468 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.12980 * 359.97290 * 28 19 18 46 46 H 1.09005 * 110.36514 * 265.28744 * 29 15 14 47 47 H 1.08998 * 110.36722 * 142.96943 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 6 1.0637 -4.8197 -0.0108 12 1 0.3942 -4.7628 0.8474 13 6 0.2630 -4.8603 -1.3392 14 6 -0.1197 -6.3499 -1.4668 15 7 0.8349 -7.1169 -0.6532 16 6 0.8277 -8.4543 -0.4865 17 8 1.6680 -8.9830 0.2102 18 6 -0.2243 -9.2928 -1.1657 19 6 -0.0105 -10.7440 -0.8198 20 6 0.8050 -11.5294 -1.6322 21 6 1.0223 -12.8419 -1.3432 22 6 0.4079 -13.4157 -0.2184 23 6 0.6019 -14.7704 0.1115 24 6 -0.0280 -15.2603 1.2198 25 6 -0.8358 -14.4237 1.9872 26 7 -1.0143 -13.1627 1.6770 27 6 -0.4268 -12.6207 0.6054 28 6 -0.6215 -11.2674 0.2776 29 6 1.8017 -6.1811 -0.0509 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 2.6849 -3.7105 -0.8952 33 1 2.6843 -3.7187 0.8848 34 1 -0.6290 -4.2374 -1.2709 35 1 0.8883 -4.5497 -2.1762 36 1 -1.1326 -6.5056 -1.0952 37 1 -0.0557 -6.6610 -2.5094 38 1 -1.2122 -8.9800 -0.8277 39 1 -0.1515 -9.1624 -2.2454 40 1 1.2740 -11.0900 -2.5002 41 1 1.6599 -13.4394 -1.9779 42 1 1.2314 -15.4047 -0.4951 43 1 0.0993 -16.2953 1.5007 44 1 -1.3281 -14.8249 2.8608 45 1 -1.2536 -10.6458 0.8944 46 1 2.6963 -6.1096 -0.6696 47 1 2.0618 -6.5015 0.9579 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265990279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:10 Heat of formation + Delta-G solvation = 29.739545 kcal Electronic energy + Delta-G solvation = -27500.907011 eV Core-core repulsion = 23648.428843 eV Total energy + Delta-G solvation = -3852.478168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.16220 -40.08109 -38.11063 -37.12724 -34.69669 -33.96217 -32.60715 -31.98937 -30.43886 -30.23223 -29.21730 -28.06285 -25.36508 -24.37209 -23.49747 -22.70164 -22.43161 -22.25923 -20.03999 -19.34175 -18.15556 -17.34301 -17.29324 -17.13309 -16.95779 -16.22641 -15.44009 -14.96887 -14.79335 -14.67142 -14.52569 -14.40669 -14.13537 -13.70229 -13.53166 -13.36028 -13.25184 -13.07076 -12.77535 -12.74217 -12.47394 -12.16844 -11.89902 -11.77074 -11.67664 -11.64153 -11.19669 -10.86063 -10.84095 -10.68828 -10.51470 -10.40254 -10.09712 -9.91307 -9.79012 -9.70452 -8.96488 -8.89185 -8.64464 -8.52013 -6.94752 -5.78749 -3.07406 0.10747 0.50696 1.71275 2.53725 2.57182 3.02612 3.43363 3.47876 3.48734 3.82670 3.94093 4.24355 4.33019 4.44262 4.48403 4.55258 4.58706 4.67775 4.73567 4.77841 4.93074 4.94227 5.04411 5.12187 5.16158 5.25191 5.29988 5.44490 5.49869 5.55024 5.60959 5.63693 5.67129 5.78777 5.88475 6.01111 6.02504 6.04690 6.10619 6.18173 6.20129 6.24604 6.37445 6.42591 6.54416 6.70424 6.82561 7.49074 7.62611 7.68134 8.10756 8.40234 9.51634 10.08405 10.43450 11.44037 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034413 B = 0.001664 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.460504 B =16819.550905 C =16965.451484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.164 3.836 11 C -0.106 4.106 12 H 0.084 0.916 13 C -0.121 4.121 14 C 0.097 3.903 15 N -0.617 5.617 16 C 0.528 3.472 17 O -0.536 6.536 18 C -0.102 4.102 19 C -0.043 4.043 20 C -0.096 4.096 21 C -0.098 4.098 22 C -0.103 4.103 23 C -0.057 4.057 24 C -0.180 4.180 25 C 0.128 3.872 26 N -0.473 5.473 27 C 0.130 3.870 28 C -0.079 4.079 29 C 0.113 3.887 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.158 0.842 45 H 0.134 0.866 46 H 0.070 0.930 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.874 -30.976 -4.545 31.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.036 3.964 11 C -0.125 4.125 12 H 0.102 0.898 13 C -0.158 4.158 14 C -0.026 4.026 15 N -0.351 5.351 16 C 0.317 3.683 17 O -0.413 6.413 18 C -0.141 4.141 19 C -0.046 4.046 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.105 4.105 23 C -0.083 4.083 24 C -0.199 4.199 25 C -0.045 4.045 26 N -0.181 5.181 27 C 0.009 3.991 28 C -0.097 4.097 29 C -0.009 4.009 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.175 0.825 45 H 0.152 0.848 46 H 0.088 0.912 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.826 -30.580 -3.703 30.933 hybrid contribution 0.682 0.454 -0.516 0.968 sum -2.144 -30.125 -4.219 30.495 Atomic orbital electron populations 1.69647 1.05095 1.25781 1.57712 1.24732 0.95535 0.97684 1.02960 0.86257 0.78516 0.83480 0.77862 1.21280 1.21688 1.21264 1.19188 0.91044 0.84135 1.42823 0.91214 1.42287 1.05839 0.99785 1.89564 1.20548 0.92766 0.84911 0.98168 1.22566 0.98099 0.93695 0.98155 0.89750 1.22640 1.01666 0.93090 0.98451 1.22178 0.92739 0.92801 0.94860 1.48559 1.31655 1.05476 1.49422 1.20053 0.85913 0.80794 0.81584 1.90740 1.39672 1.71340 1.39548 1.20732 0.99775 0.91052 1.02585 1.19047 0.96360 0.94189 0.94957 1.20784 0.97285 0.93791 0.99577 1.20907 0.99240 0.95482 0.96052 1.18849 0.99579 0.94725 0.97322 1.21476 0.96854 0.93847 0.96170 1.21873 0.99585 1.01686 0.96800 1.22963 0.94369 0.88970 0.98227 1.68038 1.21352 1.13160 1.15516 1.18801 0.94605 0.94262 0.91457 1.20605 1.00038 0.92889 0.96197 1.22259 0.91841 0.87923 0.98919 0.93470 0.78233 0.96000 0.96012 0.89408 0.90164 0.91380 0.91455 0.87544 0.87587 0.85475 0.85130 0.84465 0.84587 0.82451 0.84766 0.91206 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -17.87 5.45 -59.90 -0.33 -18.19 16 10 C 0.16 3.16 5.71 -4.04 -0.02 3.14 16 11 C -0.11 -1.61 3.10 -88.47 -0.27 -1.89 16 12 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 13 C -0.12 -1.60 6.13 -24.90 -0.15 -1.76 16 14 C 0.10 1.01 6.49 -3.06 -0.02 0.99 16 15 N -0.62 -7.79 3.33 -170.52 -0.57 -8.36 16 16 C 0.53 6.92 7.84 -10.99 -0.09 6.83 16 17 O -0.54 -9.18 16.29 5.56 0.09 -9.09 16 18 C -0.10 -0.92 4.99 -29.03 -0.14 -1.07 16 19 C -0.04 -0.45 4.34 -104.98 -0.46 -0.91 16 20 C -0.10 -0.91 9.59 -39.92 -0.38 -1.29 16 21 C -0.10 -0.87 9.78 -39.51 -0.39 -1.26 16 22 C -0.10 -1.05 5.74 -106.80 -0.61 -1.66 16 23 C -0.06 -0.44 9.90 -39.23 -0.39 -0.83 16 24 C -0.18 -1.23 10.03 -39.78 -0.40 -1.63 16 25 C 0.13 1.09 11.14 -17.47 -0.19 0.90 16 26 N -0.47 -5.63 10.34 -10.97 -0.11 -5.74 16 27 C 0.13 1.57 6.60 -84.86 -0.56 1.01 16 28 C -0.08 -0.92 9.58 -39.47 -0.38 -1.30 16 29 C 0.11 1.59 6.38 -2.53 -0.02 1.58 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.38 9.77 7.53 -40.82 -0.31 9.46 16 32 H 0.02 0.42 8.11 -51.92 -0.42 0.00 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.08 1.12 8.01 -51.93 -0.42 0.70 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.11 0.78 8.07 -51.93 -0.42 0.36 16 39 H 0.11 0.70 8.07 -51.93 -0.42 0.28 16 40 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 43 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 44 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 45 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 46 H 0.07 0.97 8.04 -51.93 -0.42 0.55 16 47 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 LS Contribution 393.23 15.07 5.93 5.93 Total: -1.00 -35.05 393.23 -11.03 -46.08 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.01 Total: 5.60 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -4.72 Total: -6.40 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.28 Total: -59.28 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.05 -11.03 -46.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265990279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.817 kcal (2) G-P(sol) polarization free energy of solvation -35.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds