Wall clock time and date at job start Tue Mar 31 2020 22:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 12 12 H 1.08996 * 110.88681 * 302.57294 * 11 10 9 13 13 C 1.55159 * 111.00328 * 66.45684 * 11 10 9 14 14 C 1.54324 * 102.94333 * 153.57938 * 13 11 10 15 15 N 1.47024 * 107.26681 * 337.80338 * 14 13 11 16 16 C 1.34779 * 125.64144 * 178.98815 * 15 14 13 17 17 O 1.21282 * 119.99433 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00253 * 359.97404 * 16 15 14 19 19 C 1.50710 * 109.46762 * 179.97438 * 18 16 15 20 20 C 1.39353 * 119.46556 * 269.72990 * 19 18 16 21 21 C 1.36141 * 120.86361 * 179.71475 * 20 19 18 22 22 C 1.40421 * 119.61426 * 0.55448 * 21 20 19 23 23 C 1.40774 * 121.37835 * 179.70426 * 22 21 20 24 24 C 1.36570 * 118.15428 * 180.02562 * 23 22 21 25 25 C 1.39324 * 119.93431 * 0.02562 * 24 23 22 26 26 N 1.31085 * 121.75267 * 359.97438 * 25 24 23 27 27 C 1.33687 * 121.31842 * 0.02562 * 26 25 24 28 28 C 1.36073 * 119.46145 * 90.00332 * 19 18 16 29 29 C 1.47419 * 108.70634 * 358.94381 * 15 14 13 30 30 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 32 32 H 1.09009 * 109.47454 * 300.27377 * 10 9 7 33 33 H 1.08998 * 109.47492 * 60.27672 * 10 9 7 34 34 H 1.09004 * 110.71465 * 271.93928 * 13 11 10 35 35 H 1.08996 * 110.72622 * 35.20996 * 13 11 10 36 36 H 1.09003 * 109.88379 * 97.22077 * 14 13 11 37 37 H 1.08996 * 109.87998 * 218.22956 * 14 13 11 38 38 H 1.08997 * 109.47116 * 299.99734 * 18 16 15 39 39 H 1.09000 * 109.47191 * 60.00203 * 18 16 15 40 40 H 1.08002 * 119.56889 * 359.97438 * 20 19 18 41 41 H 1.08001 * 120.19279 * 180.27846 * 21 20 19 42 42 H 1.08010 * 120.91919 * 0.02562 * 23 22 21 43 43 H 1.07999 * 120.03365 * 179.97438 * 24 23 22 44 44 H 1.08007 * 119.12468 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.12980 * 359.97290 * 28 19 18 46 46 H 1.09005 * 110.36514 * 265.28744 * 29 15 14 47 47 H 1.08998 * 110.36722 * 142.96943 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 6 1.0637 -4.8197 -0.0108 12 1 0.3942 -4.7628 0.8474 13 6 0.2630 -4.8603 -1.3392 14 6 -0.1197 -6.3499 -1.4668 15 7 0.8349 -7.1169 -0.6532 16 6 0.8277 -8.4543 -0.4865 17 8 1.6680 -8.9830 0.2102 18 6 -0.2243 -9.2928 -1.1657 19 6 -0.0105 -10.7440 -0.8198 20 6 0.8050 -11.5294 -1.6322 21 6 1.0223 -12.8419 -1.3432 22 6 0.4079 -13.4157 -0.2184 23 6 0.6019 -14.7704 0.1115 24 6 -0.0280 -15.2603 1.2198 25 6 -0.8358 -14.4237 1.9872 26 7 -1.0143 -13.1627 1.6770 27 6 -0.4268 -12.6207 0.6054 28 6 -0.6215 -11.2674 0.2776 29 6 1.8017 -6.1811 -0.0509 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 2.6849 -3.7105 -0.8952 33 1 2.6843 -3.7187 0.8848 34 1 -0.6290 -4.2374 -1.2709 35 1 0.8883 -4.5497 -2.1762 36 1 -1.1326 -6.5056 -1.0952 37 1 -0.0557 -6.6610 -2.5094 38 1 -1.2122 -8.9800 -0.8277 39 1 -0.1515 -9.1624 -2.2454 40 1 1.2740 -11.0900 -2.5002 41 1 1.6599 -13.4394 -1.9779 42 1 1.2314 -15.4047 -0.4951 43 1 0.0993 -16.2953 1.5007 44 1 -1.3281 -14.8249 2.8608 45 1 -1.2536 -10.6458 0.8944 46 1 2.6963 -6.1096 -0.6696 47 1 2.0618 -6.5015 0.9579 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265990279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:09 Heat of formation + Delta-G solvation = 8.138964 kcal Electronic energy + Delta-G solvation = -27501.843682 eV Core-core repulsion = 23648.428843 eV Total energy + Delta-G solvation = -3853.414839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.84914 -41.08127 -39.11003 -38.00457 -36.42317 -34.63542 -33.98932 -33.01134 -31.78912 -31.07968 -30.32343 -28.99046 -26.92750 -25.10092 -24.65894 -23.94499 -23.50764 -23.00944 -21.35298 -20.30209 -19.15291 -18.80568 -18.17644 -17.96992 -17.78763 -17.36386 -16.56377 -16.34871 -15.81357 -15.46987 -15.40831 -15.26316 -15.17743 -15.03093 -14.92993 -14.67955 -13.98734 -13.94892 -13.89899 -13.84488 -13.69610 -13.05078 -12.96501 -12.92657 -12.71650 -12.60912 -12.45408 -12.30408 -12.23240 -12.12675 -11.77476 -11.66943 -11.59810 -11.50051 -10.98343 -10.91396 -10.45139 -9.67868 -9.64699 -9.20830 -8.98601 -7.94230 -5.22549 -0.53243 -0.16114 1.03928 1.48829 1.51264 1.57341 1.58590 1.79651 2.14598 2.57125 3.12405 3.30211 3.38344 3.43071 3.61026 3.66528 3.68391 3.83876 3.90493 3.92594 4.03986 4.09948 4.18980 4.27081 4.31600 4.34243 4.44384 4.54130 4.55142 4.59426 4.61343 4.64711 4.81679 4.85433 4.87394 5.00170 5.04150 5.06519 5.09090 5.14829 5.24303 5.27867 5.39833 5.41945 5.49470 5.50822 5.62744 5.91065 6.27993 6.50890 6.96879 7.10663 7.35304 8.09991 8.34802 9.28782 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034413 B = 0.001664 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.460504 B =16819.550905 C =16965.451484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.972 3.028 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.281 1.281 7 C -0.249 4.249 8 H 0.074 0.926 9 N -0.740 5.740 10 C 0.164 3.836 11 C -0.098 4.098 12 H 0.074 0.926 13 C -0.117 4.117 14 C 0.103 3.897 15 N -0.617 5.617 16 C 0.527 3.473 17 O -0.584 6.584 18 C -0.093 4.093 19 C -0.049 4.049 20 C -0.113 4.113 21 C -0.095 4.095 22 C -0.124 4.124 23 C -0.059 4.059 24 C -0.177 4.177 25 C 0.120 3.880 26 N -0.517 5.517 27 C 0.100 3.900 28 C -0.108 4.108 29 C 0.119 3.881 30 H 0.251 0.749 31 H 0.377 0.623 32 H 0.027 0.973 33 H 0.016 0.984 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.125 0.875 39 H 0.140 0.860 40 H 0.148 0.852 41 H 0.162 0.838 42 H 0.171 0.829 43 H 0.173 0.827 44 H 0.183 0.817 45 H 0.124 0.876 46 H 0.073 0.927 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.342 -33.029 -6.181 33.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.801 3.199 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.207 1.207 7 C -0.380 4.380 8 H 0.092 0.908 9 N -0.383 5.383 10 C 0.037 3.963 11 C -0.117 4.117 12 H 0.093 0.907 13 C -0.155 4.155 14 C -0.019 4.019 15 N -0.350 5.350 16 C 0.317 3.683 17 O -0.464 6.464 18 C -0.132 4.132 19 C -0.051 4.051 20 C -0.130 4.130 21 C -0.113 4.113 22 C -0.126 4.126 23 C -0.085 4.085 24 C -0.196 4.196 25 C -0.052 4.052 26 N -0.225 5.225 27 C -0.021 4.021 28 C -0.127 4.127 29 C -0.004 4.004 30 H 0.060 0.940 31 H 0.209 0.791 32 H 0.045 0.955 33 H 0.034 0.966 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.143 0.857 39 H 0.157 0.843 40 H 0.166 0.834 41 H 0.179 0.821 42 H 0.189 0.811 43 H 0.191 0.809 44 H 0.200 0.800 45 H 0.142 0.858 46 H 0.091 0.909 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.285 -32.650 -5.357 33.165 hybrid contribution 0.558 0.970 0.062 1.120 sum -1.727 -31.680 -5.295 32.166 Atomic orbital electron populations 1.69795 1.06450 1.26135 1.59292 1.25520 0.96407 1.00924 1.03599 0.85237 0.77235 0.79312 0.78111 1.20330 1.22076 1.20717 1.19587 0.91497 0.85424 1.41526 0.90850 1.42444 1.05683 1.00785 1.89422 1.20645 0.93403 0.84405 0.97827 1.22345 0.97384 0.92772 0.99219 0.90726 1.22578 1.00832 0.95352 0.96759 1.22284 0.92971 0.90170 0.96462 1.48618 1.31583 1.05474 1.49334 1.20737 0.85963 0.80742 0.80868 1.90719 1.41804 1.72159 1.41724 1.20786 0.98944 0.89401 1.04056 1.19255 0.96181 0.94971 0.94672 1.21097 0.97427 0.94222 1.00286 1.21311 0.98658 0.95681 0.95668 1.19185 0.99718 0.96006 0.97719 1.21927 0.96825 0.93089 0.96626 1.22273 0.98231 1.03098 0.95993 1.23571 0.94234 0.88342 0.99038 1.68021 1.23061 1.15001 1.16466 1.19082 0.95789 0.94836 0.92353 1.20704 1.01399 0.93352 0.97208 1.22050 0.92308 0.87526 0.98527 0.93979 0.79111 0.95462 0.96626 0.90169 0.90616 0.89305 0.88213 0.85731 0.84250 0.83380 0.82084 0.81140 0.80909 0.79996 0.85846 0.90883 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.02 13.06 21.65 0.28 -57.73 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 3 Si 0.97 45.70 29.55 68.60 2.03 47.72 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.25 -13.75 9.99 84.03 0.84 -12.91 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 9 N -0.74 -36.63 5.45 -343.44 -1.87 -38.50 16 10 C 0.16 6.37 5.71 86.38 0.49 6.86 16 11 C -0.10 -2.98 3.10 -9.40 -0.03 -3.01 16 12 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 13 C -0.12 -2.99 6.13 31.78 0.19 -2.79 16 14 C 0.10 1.88 6.49 86.73 0.56 2.44 16 15 N -0.62 -14.72 3.33 -811.80 -2.70 -17.42 16 16 C 0.53 13.28 7.84 87.66 0.69 13.97 16 17 O -0.58 -20.25 16.29 -3.03 -0.05 -20.30 16 18 C -0.09 -1.52 4.99 29.10 0.15 -1.37 16 19 C -0.05 -1.00 4.34 -20.10 -0.09 -1.08 16 20 C -0.11 -1.95 9.59 22.05 0.21 -1.74 16 21 C -0.09 -1.52 9.78 22.31 0.22 -1.30 16 22 C -0.12 -2.43 5.74 -21.28 -0.12 -2.55 16 23 C -0.06 -0.77 9.90 22.50 0.22 -0.54 16 24 C -0.18 -2.03 10.03 22.14 0.22 -1.81 16 25 C 0.12 1.97 11.14 85.07 0.95 2.92 16 26 N -0.52 -12.74 10.34 -188.63 -1.95 -14.69 16 27 C 0.10 2.49 6.60 40.29 0.27 2.76 16 28 C -0.11 -2.65 9.58 22.34 0.21 -2.43 16 29 C 0.12 3.33 6.38 86.86 0.55 3.89 16 30 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.38 19.52 7.53 -92.71 -0.70 18.82 16 32 H 0.03 1.05 8.11 -2.38 -0.02 1.03 16 33 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.08 2.01 8.01 -2.39 -0.02 1.99 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.12 1.58 8.07 -2.39 -0.02 1.56 16 39 H 0.14 1.33 8.07 -2.39 -0.02 1.31 16 40 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 42 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 43 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 44 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 45 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 46 H 0.07 1.99 8.04 -2.38 -0.02 1.98 16 47 H 0.06 1.93 8.04 -2.39 -0.02 1.91 16 Total: -1.00 -78.82 393.23 2.02 -76.80 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.28 Total: 26.44 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 6.01 Total: -2.32 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -6.24 Total: -128.35 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.05 Total: -20.30 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -78.82 2.02 -76.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265990279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.943 kcal (2) G-P(sol) polarization free energy of solvation -78.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds