Wall clock time and date at job start Tue Mar 31 2020 22:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00160 * 2 1 4 4 H 1.48497 * 109.47018 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47084 * 300.00319 * 3 2 1 6 6 H 1.48500 * 109.46920 * 59.99773 * 3 2 1 7 7 C 1.38808 * 119.99448 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99477 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00633 * 0.02562 * 7 2 1 10 10 C 1.47424 * 125.64307 * 14.61499 * 9 7 2 11 11 C 1.54916 * 104.82867 * 155.85542 * 10 9 7 12 12 C 1.55157 * 101.58262 * 37.01025 * 11 10 9 13 13 C 1.47017 * 125.65019 * 194.59494 * 9 7 2 14 14 H 1.09000 * 109.88540 * 300.64845 * 13 9 7 15 15 C 1.53005 * 109.88222 * 61.66278 * 13 9 7 16 16 N 1.46499 * 109.47313 * 183.75051 * 15 13 9 17 17 C 1.34770 * 120.00203 * 185.64728 * 16 15 13 18 18 O 1.21280 * 120.00234 * 359.97438 * 17 16 15 19 19 C 1.50708 * 119.99959 * 179.97438 * 17 16 15 20 20 C 1.50700 * 109.46668 * 180.02562 * 19 17 16 21 21 C 1.39384 * 119.48924 * 90.00488 * 20 19 17 22 22 C 1.36170 * 121.08291 * 179.97438 * 21 20 19 23 23 C 1.40370 * 119.51844 * 0.02562 * 22 21 20 24 24 C 1.40437 * 122.08610 * 180.02562 * 23 22 21 25 25 N 1.31239 * 119.88223 * 179.97438 * 24 23 22 26 26 C 1.32597 * 122.78143 * 0.02562 * 25 24 23 27 27 C 1.36176 * 121.87801 * 359.97438 * 26 25 24 28 28 C 1.40688 * 118.66318 * 0.04052 * 27 26 25 29 29 C 1.36210 * 119.49033 * 269.71953 * 20 19 17 30 30 H 0.97008 * 119.99480 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.36390 * 274.68815 * 10 9 7 32 32 H 1.08993 * 110.37140 * 37.01470 * 10 9 7 33 33 H 1.09000 * 111.00101 * 155.08037 * 11 10 9 34 34 H 1.08997 * 111.00368 * 278.93681 * 11 10 9 35 35 H 1.08996 * 110.72222 * 206.13562 * 12 11 10 36 36 H 1.08999 * 110.87354 * 82.92511 * 12 11 10 37 37 H 1.09006 * 109.46817 * 303.74825 * 15 13 9 38 38 H 1.08994 * 109.47385 * 63.74579 * 15 13 9 39 39 H 0.97007 * 119.99350 * 5.64746 * 16 15 13 40 40 H 1.09001 * 109.47018 * 300.00085 * 19 17 16 41 41 H 1.08996 * 109.46851 * 60.00027 * 19 17 16 42 42 H 1.07999 * 119.45502 * 359.96922 * 21 20 19 43 43 H 1.07998 * 120.23701 * 179.97438 * 22 21 20 44 44 H 1.08003 * 120.05258 * 359.96968 * 24 23 22 45 45 H 1.08005 * 119.06321 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.67088 * 180.02562 * 27 26 25 47 47 H 1.08007 * 120.26447 * 0.03571 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1079 -2.5523 -0.3046 11 6 -0.2473 -4.0205 -0.7787 12 6 0.7644 -4.7446 0.1483 13 6 1.8982 -3.7084 0.2988 14 1 2.7029 -3.9316 -0.4018 15 6 2.4351 -3.7290 1.7314 16 7 3.0830 -5.0170 1.9916 17 6 3.5317 -5.3078 3.2287 18 8 3.3996 -4.5032 4.1265 19 6 4.1976 -6.6330 3.4965 20 6 4.6028 -6.7076 4.9461 21 6 3.7102 -7.2272 5.8821 22 6 4.0427 -7.3102 7.2000 23 6 5.3045 -6.8651 7.6243 24 6 5.7035 -6.9261 8.9694 25 7 6.8941 -6.4981 9.3182 26 6 7.7610 -5.9988 8.4479 27 6 7.4705 -5.8966 7.1215 28 6 6.2120 -6.3350 6.6706 29 6 5.8377 -6.2717 5.3205 30 1 -0.4850 0.8402 0.0004 31 1 -0.7065 -2.3844 0.5908 32 1 -0.4090 -1.8674 -1.0972 33 1 -1.2599 -4.3893 -0.6154 34 1 0.0398 -4.1220 -1.8253 35 1 1.1346 -5.6557 -0.3218 36 1 0.3144 -4.9670 1.1158 37 1 3.1601 -2.9252 1.8592 38 1 1.6106 -3.5892 2.4305 39 1 3.1890 -5.6604 1.2734 40 1 3.5017 -7.4413 3.2720 41 1 5.0818 -6.7292 2.8663 42 1 2.7389 -7.5695 5.5567 43 1 3.3403 -7.7149 7.9136 44 1 5.0317 -7.3244 9.7154 45 1 8.7254 -5.6644 8.8010 46 1 8.1915 -5.4871 6.4295 47 1 6.5213 -5.8750 4.5843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267275376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:01 Heat of formation + Delta-G solvation = 13.046903 kcal Electronic energy + Delta-G solvation = -28013.420597 eV Core-core repulsion = 24160.218581 eV Total energy + Delta-G solvation = -3853.202015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.81648 -40.77523 -39.33796 -38.32786 -35.70160 -34.41317 -34.06241 -33.57590 -31.48022 -30.84070 -30.49037 -28.80720 -26.70178 -25.58869 -24.85620 -23.78029 -23.14664 -22.04766 -21.43434 -21.07263 -18.91101 -18.73808 -18.13531 -17.84775 -17.59785 -17.23340 -16.63541 -16.38128 -15.94692 -15.79232 -15.67010 -15.22204 -15.07349 -15.03290 -14.56623 -14.49088 -14.38284 -13.97529 -13.67061 -13.57467 -13.43105 -13.03094 -12.94494 -12.86436 -12.78795 -12.69279 -12.66099 -11.99966 -11.95908 -11.87953 -11.71419 -11.48701 -11.38828 -11.16918 -10.96766 -10.70468 -10.48587 -10.03007 -9.88755 -9.01041 -8.86530 -7.90611 -5.27761 -0.57981 -0.09696 0.97551 1.41674 1.44030 1.52978 1.70682 1.95590 2.36233 2.51091 3.12292 3.29679 3.48706 3.56373 3.63412 3.72507 3.88385 3.92380 3.94859 4.00532 4.08067 4.12458 4.24170 4.28600 4.38221 4.46598 4.51558 4.56185 4.62847 4.70541 4.74604 4.79663 4.86773 4.98582 5.01894 5.12778 5.13191 5.16448 5.23782 5.38892 5.40599 5.46568 5.53453 5.60203 5.66473 5.70083 5.77721 5.90516 6.22035 6.66419 6.99646 7.07691 7.36591 7.75344 8.40795 9.20543 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014714 B = 0.002269 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.462472 B =12338.676058 C =13577.454048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.297 1.297 7 C -0.237 4.237 8 H 0.077 0.923 9 N -0.612 5.612 10 C 0.172 3.828 11 C -0.134 4.134 12 C -0.111 4.111 13 C 0.148 3.852 14 H 0.054 0.946 15 C 0.130 3.870 16 N -0.707 5.707 17 C 0.506 3.494 18 O -0.591 6.591 19 C -0.095 4.095 20 C -0.048 4.048 21 C -0.115 4.115 22 C -0.089 4.089 23 C -0.132 4.132 24 C 0.141 3.859 25 N -0.517 5.517 26 C 0.059 3.941 27 C -0.161 4.161 28 C -0.045 4.045 29 C -0.117 4.117 30 H 0.247 0.753 31 H -0.011 1.011 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.028 0.972 38 H 0.032 0.968 39 H 0.418 0.582 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.146 0.854 43 H 0.162 0.838 44 H 0.189 0.811 45 H 0.172 0.828 46 H 0.155 0.845 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.267 -22.835 8.296 26.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.255 4.255 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.224 1.224 7 C -0.366 4.366 8 H 0.094 0.906 9 N -0.337 5.337 10 C 0.047 3.953 11 C -0.173 4.173 12 C -0.148 4.148 13 C 0.040 3.960 14 H 0.072 0.928 15 C 0.004 3.996 16 N -0.360 5.360 17 C 0.293 3.707 18 O -0.472 6.472 19 C -0.134 4.134 20 C -0.050 4.050 21 C -0.133 4.133 22 C -0.109 4.109 23 C -0.134 4.134 24 C -0.030 4.030 25 N -0.226 5.226 26 C -0.083 4.083 27 C -0.180 4.180 28 C -0.050 4.050 29 C -0.135 4.135 30 H 0.056 0.944 31 H 0.008 0.992 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.127 0.873 36 H 0.083 0.917 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.256 0.744 40 H 0.160 0.840 41 H 0.153 0.847 42 H 0.164 0.836 43 H 0.179 0.821 44 H 0.206 0.794 45 H 0.189 0.811 46 H 0.173 0.827 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.534 -22.012 9.728 26.270 hybrid contribution -0.044 1.705 -0.969 1.961 sum 10.489 -20.307 8.759 24.477 Atomic orbital electron populations 1.70152 1.06278 1.25271 1.57699 1.25684 0.96519 1.01010 1.02300 0.85137 0.78370 0.79942 0.76698 1.19087 1.21450 1.22384 1.19326 0.90723 0.83642 1.42929 0.90554 1.44770 1.06826 1.02228 1.79856 1.21272 0.84132 0.93656 0.96196 1.22874 0.99743 0.95174 0.99459 1.22589 0.95005 0.97411 0.99814 1.21369 0.96148 0.86581 0.91867 0.92848 1.21612 0.95169 0.84524 0.98335 1.45841 1.59706 1.18932 1.11518 1.21281 0.78016 0.89496 0.81860 1.90744 1.58405 1.52216 1.45791 1.20837 1.04152 0.94573 0.93860 1.19446 0.93584 0.96347 0.95636 1.21134 0.99929 0.98980 0.93252 1.21279 0.94752 0.98041 0.96818 1.19326 0.96430 1.02226 0.95424 1.23661 0.92659 0.93153 0.93542 1.67443 1.04222 1.11264 1.39644 1.22533 0.99434 0.96531 0.89815 1.22168 0.96581 1.01211 0.98083 1.18480 0.94719 0.97440 0.94358 1.21010 0.97599 1.00220 0.94704 0.94356 0.99245 0.94689 0.89983 0.91037 0.87324 0.91713 0.95397 0.94955 0.74418 0.83985 0.84725 0.83648 0.82080 0.79390 0.81109 0.82708 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.27 10.58 21.65 0.23 -57.04 16 2 C -0.06 -3.52 5.47 84.86 0.46 -3.06 16 3 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 6 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 7 C -0.24 -13.14 9.74 84.03 0.82 -12.32 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.61 -30.27 3.13 -668.24 -2.09 -32.36 16 10 C 0.17 8.29 5.41 86.86 0.47 8.76 16 11 C -0.13 -4.45 7.09 31.99 0.23 -4.22 16 12 C -0.11 -3.10 6.18 31.78 0.20 -2.91 16 13 C 0.15 5.37 3.20 45.35 0.15 5.52 16 14 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 15 C 0.13 4.84 5.09 86.38 0.44 5.28 16 16 N -0.71 -17.62 5.34 -463.05 -2.47 -20.09 16 17 C 0.51 13.32 7.82 87.66 0.69 14.01 16 18 O -0.59 -22.84 16.02 -3.03 -0.05 -22.89 16 19 C -0.10 -1.39 5.80 29.10 0.17 -1.23 16 20 C -0.05 -0.95 4.34 -20.06 -0.09 -1.03 16 21 C -0.12 -2.09 9.58 22.06 0.21 -1.87 16 22 C -0.09 -1.56 9.81 22.31 0.22 -1.34 16 23 C -0.13 -2.79 5.74 -21.31 -0.12 -2.91 16 24 C 0.14 2.74 11.05 85.32 0.94 3.68 16 25 N -0.52 -11.61 10.30 -195.53 -2.01 -13.63 16 26 C 0.06 1.18 11.07 84.10 0.93 2.11 16 27 C -0.16 -3.19 9.88 22.39 0.22 -2.97 16 28 C -0.04 -1.01 5.75 -21.28 -0.12 -1.14 16 29 C -0.12 -2.48 9.42 22.28 0.21 -2.27 16 30 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 31 H -0.01 -0.57 8.06 -2.39 -0.02 -0.59 16 32 H 0.03 1.91 6.93 -2.39 -0.02 1.89 16 33 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.06 1.83 7.79 -2.39 -0.02 1.82 16 37 H 0.03 1.23 7.88 -2.38 -0.02 1.22 16 38 H 0.03 1.41 8.04 -2.39 -0.02 1.39 16 39 H 0.42 6.65 8.39 -92.70 -0.78 5.87 16 40 H 0.14 1.08 8.08 -2.39 -0.02 1.06 16 41 H 0.13 1.20 8.07 -2.39 -0.02 1.18 16 42 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 44 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 45 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 46 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 47 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -82.07 388.95 1.85 -80.22 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.20 Total: 15.13 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 6.02 Total: 2.08 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -6.35 Total: -123.11 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -82.07 1.85 -80.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267275376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.270 kcal (2) G-P(sol) polarization free energy of solvation -82.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds