Wall clock time and date at job start Tue Mar 31 2020 22:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86792 * 120.00336 * 2 1 4 4 H 1.48498 * 109.47196 * 264.54316 * 3 2 1 5 5 H 1.48510 * 109.47106 * 24.53857 * 3 2 1 6 6 H 1.48492 * 109.47267 * 144.53861 * 3 2 1 7 7 C 1.38813 * 119.99502 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00105 * 337.61234 * 7 2 1 9 9 N 1.36940 * 119.99845 * 157.60351 * 7 2 1 10 10 C 1.47426 * 125.64782 * 341.52923 * 9 7 2 11 11 C 1.54908 * 104.92948 * 204.15046 * 10 9 7 12 12 C 1.55158 * 101.58024 * 322.93552 * 11 10 9 13 13 H 1.09001 * 110.71842 * 277.13774 * 12 11 10 14 14 C 1.52998 * 110.72138 * 153.86363 * 12 11 10 15 15 N 1.46499 * 109.47325 * 174.99863 * 14 12 11 16 16 C 1.34772 * 120.00154 * 180.02562 * 15 14 12 17 17 O 1.21274 * 120.00336 * 359.97438 * 16 15 14 18 18 C 1.50709 * 120.00011 * 180.02562 * 16 15 14 19 19 C 1.50697 * 109.47152 * 180.02562 * 18 16 15 20 20 C 1.39377 * 119.48778 * 269.73122 * 19 18 16 21 21 C 1.36180 * 121.08376 * 179.71135 * 20 19 18 22 22 C 1.40372 * 119.51381 * 0.55067 * 21 20 19 23 23 C 1.40431 * 122.07701 * 179.73064 * 22 21 20 24 24 N 1.31249 * 119.87841 * 180.02562 * 23 22 21 25 25 C 1.32612 * 122.77837 * 0.02562 * 24 23 22 26 26 C 1.36168 * 121.87207 * 359.97299 * 25 24 23 27 27 C 1.40687 * 118.67272 * 0.02562 * 26 25 24 28 28 C 1.36209 * 119.49532 * 89.99400 * 19 18 16 29 29 C 1.47283 * 125.79385 * 161.52064 * 9 7 2 30 30 H 0.97002 * 119.99552 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.36505 * 85.25360 * 10 9 7 32 32 H 1.09001 * 110.36209 * 323.04424 * 10 9 7 33 33 H 1.08995 * 111.00473 * 81.00582 * 11 10 9 34 34 H 1.08996 * 111.00537 * 204.82150 * 11 10 9 35 35 H 1.08995 * 109.47343 * 294.99871 * 14 12 11 36 36 H 1.08997 * 109.47040 * 54.99896 * 14 12 11 37 37 H 0.97005 * 119.99934 * 0.02562 * 15 14 12 38 38 H 1.08995 * 109.46866 * 299.99962 * 18 16 15 39 39 H 1.08997 * 109.47228 * 59.99810 * 18 16 15 40 40 H 1.08003 * 119.45850 * 359.97438 * 20 19 18 41 41 H 1.07996 * 120.24105 * 180.25970 * 21 20 19 42 42 H 1.07999 * 120.06222 * 0.04134 * 23 22 21 43 43 H 1.07995 * 119.05708 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.66016 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.25699 * 359.97438 * 28 19 18 46 46 H 1.09001 * 109.86001 * 59.50422 * 29 9 7 47 47 H 1.09000 * 110.00602 * 298.43522 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6131 1.9797 -1.3937 5 1 1.3948 2.6832 0.5815 6 1 3.4853 1.4761 0.8122 7 6 2.0102 -1.2022 -0.0005 8 1 1.5312 -2.1024 0.3553 9 7 3.3021 -1.2468 -0.4524 10 6 3.9504 -0.2320 -1.3029 11 6 5.0955 -0.9870 -2.0229 12 6 5.5827 -1.9501 -0.9081 13 1 6.2759 -1.4434 -0.2366 14 6 6.2284 -3.1975 -1.5146 15 7 6.7839 -4.0294 -0.4442 16 6 7.4058 -5.1868 -0.7441 17 8 7.5053 -5.5400 -1.9000 18 6 7.9767 -6.0428 0.3571 19 6 8.6139 -7.2708 -0.2403 20 6 7.8495 -8.4225 -0.4189 21 6 8.3906 -9.5484 -0.9610 22 6 9.7433 -9.5542 -1.3360 23 6 10.3576 -10.6868 -1.8945 24 7 11.6260 -10.6445 -2.2292 25 6 12.3766 -9.5638 -2.0637 26 6 11.8756 -8.4152 -1.5309 27 6 10.5224 -8.3831 -1.1473 28 6 9.9294 -7.2399 -0.5925 29 6 4.2767 -2.3147 -0.1712 30 1 -0.4849 0.8401 0.0004 31 1 4.3540 0.5744 -0.6905 32 1 3.2408 0.1632 -2.0297 33 1 4.7180 -1.5424 -2.8814 34 1 5.8883 -0.3014 -2.3217 35 1 5.4770 -3.7654 -2.0632 36 1 7.0266 -2.8995 -2.1944 37 1 6.7040 -3.7471 0.4804 38 1 8.7277 -5.4749 0.9064 39 1 7.1783 -6.3412 1.0363 40 1 6.8099 -8.4206 -0.1264 41 1 7.7847 -10.4320 -1.0971 42 1 9.7873 -11.5909 -2.0486 43 1 13.4146 -9.5958 -2.3600 44 1 12.5046 -7.5463 -1.4053 45 1 10.5112 -6.3420 -0.4451 46 1 3.8975 -3.2682 -0.5387 47 1 4.4615 -2.3780 0.9012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267299669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:19 Heat of formation + Delta-G solvation = 14.326532 kcal Electronic energy + Delta-G solvation = -27574.250842 eV Core-core repulsion = 23721.104316 eV Total energy + Delta-G solvation = -3853.146526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.81262 -40.79936 -39.52415 -38.35276 -36.03983 -34.44537 -34.05473 -33.57534 -32.17981 -30.74714 -30.27350 -29.05724 -27.29638 -25.17241 -24.78605 -23.73143 -23.13740 -22.75048 -21.45876 -21.03419 -18.94005 -18.75861 -18.19373 -17.89330 -17.58597 -17.24355 -17.14266 -16.50251 -16.14900 -15.85189 -15.45076 -15.23912 -15.13773 -15.11796 -14.81219 -14.64970 -14.36889 -14.22096 -13.92396 -13.69087 -13.55447 -13.25345 -13.01775 -12.92228 -12.84819 -12.72630 -12.61435 -12.24828 -11.99589 -11.95191 -11.81411 -11.61952 -11.36669 -11.15983 -10.94087 -10.80344 -10.47143 -10.04720 -9.88249 -9.04576 -8.99971 -8.18368 -5.44710 -0.57178 -0.08971 0.98518 1.31181 1.38882 1.48349 1.68993 1.96365 2.39847 2.41719 3.03298 3.13207 3.31267 3.49604 3.57182 3.64388 3.70626 3.85671 3.88900 3.89620 3.93376 4.04498 4.11617 4.25168 4.38158 4.39883 4.40334 4.51234 4.58252 4.64007 4.71379 4.79265 4.80314 4.82750 4.84994 4.88559 5.03776 5.07826 5.13561 5.13953 5.19871 5.37015 5.39492 5.50704 5.53672 5.67996 5.71153 5.90639 6.09665 6.60585 6.76624 7.01084 7.30342 7.54133 8.11044 9.01538 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032298 B = 0.001775 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.728348 B =15774.857317 C =16199.726000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.041 4.041 3 Si 0.951 3.049 4 H -0.270 1.270 5 H -0.310 1.310 6 H -0.265 1.265 7 C -0.236 4.236 8 H 0.056 0.944 9 N -0.630 5.630 10 C 0.099 3.901 11 C -0.112 4.112 12 C -0.094 4.094 13 H 0.107 0.893 14 C 0.143 3.857 15 N -0.718 5.718 16 C 0.513 3.487 17 O -0.583 6.583 18 C -0.102 4.102 19 C -0.048 4.048 20 C -0.117 4.117 21 C -0.090 4.090 22 C -0.131 4.131 23 C 0.139 3.861 24 N -0.518 5.518 25 C 0.058 3.942 26 C -0.158 4.158 27 C -0.044 4.044 28 C -0.112 4.112 29 C 0.135 3.865 30 H 0.262 0.738 31 H 0.028 0.972 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.416 0.584 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.140 0.860 41 H 0.158 0.842 42 H 0.186 0.814 43 H 0.172 0.828 44 H 0.159 0.841 45 H 0.144 0.856 46 H 0.025 0.975 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.443 -16.106 1.042 30.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.235 4.235 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.238 1.238 6 H -0.190 1.190 7 C -0.365 4.365 8 H 0.074 0.926 9 N -0.358 5.358 10 C -0.025 4.025 11 C -0.151 4.151 12 C -0.114 4.114 13 H 0.126 0.874 14 C 0.019 3.981 15 N -0.370 5.370 16 C 0.300 3.700 17 O -0.462 6.462 18 C -0.141 4.141 19 C -0.050 4.050 20 C -0.135 4.135 21 C -0.110 4.110 22 C -0.133 4.133 23 C -0.032 4.032 24 N -0.227 5.227 25 C -0.084 4.084 26 C -0.177 4.177 27 C -0.049 4.049 28 C -0.130 4.130 29 C 0.011 3.989 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.253 0.747 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.158 0.842 41 H 0.175 0.825 42 H 0.203 0.797 43 H 0.189 0.811 44 H 0.176 0.824 45 H 0.162 0.838 46 H 0.043 0.957 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 26.841 -16.937 -0.113 31.738 hybrid contribution -1.016 1.804 0.758 2.205 sum 25.825 -15.133 0.645 29.939 Atomic orbital electron populations 1.69989 1.07315 1.27267 1.55908 1.25691 0.95851 1.01007 1.00995 0.85879 0.77819 0.79871 0.78490 1.19625 1.23835 1.18992 1.18574 0.86544 0.94217 1.37120 0.92604 1.44962 1.09368 1.24018 1.57403 1.22104 0.94819 0.92729 0.92883 1.22694 0.97211 0.98102 0.97072 1.22335 0.95746 0.95489 0.97781 0.87437 1.21158 0.97327 0.89857 0.89805 1.45963 1.57661 1.21965 1.11444 1.21002 0.77408 0.81232 0.90325 1.90731 1.59656 1.72543 1.23312 1.20842 1.03470 0.93311 0.96450 1.19404 0.93619 0.94826 0.97155 1.21117 1.00744 0.92642 0.98999 1.21254 0.93170 0.99753 0.96813 1.19302 0.96034 0.95470 1.02512 1.23629 0.90591 0.97465 0.91477 1.67451 1.07599 1.29839 1.17793 1.22553 1.00765 0.88419 0.96686 1.22170 0.94640 1.00755 1.00128 1.18469 0.94571 0.94183 0.97644 1.21001 0.95347 0.97547 0.99117 1.21639 0.88559 0.90913 0.97829 0.92928 0.95404 0.94622 0.90889 0.87679 0.93159 0.90620 0.74682 0.84605 0.85035 0.84186 0.82454 0.79689 0.81105 0.82366 0.83783 0.95677 0.94311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.61 13.97 21.65 0.30 -60.31 16 2 C -0.04 -2.42 5.43 84.86 0.46 -1.96 16 3 Si 0.95 46.24 24.27 68.60 1.66 47.91 16 4 H -0.27 -12.36 6.48 99.48 0.64 -11.72 16 5 H -0.31 -15.30 7.11 99.48 0.71 -14.59 16 6 H -0.26 -12.17 6.65 99.48 0.66 -11.51 16 7 C -0.24 -13.49 10.58 84.03 0.89 -12.60 16 8 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 9 N -0.63 -29.15 3.22 -691.31 -2.22 -31.37 16 10 C 0.10 3.95 4.69 86.85 0.41 4.36 16 11 C -0.11 -3.12 6.53 31.99 0.21 -2.91 16 12 C -0.09 -2.32 2.96 -9.60 -0.03 -2.35 16 13 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 14 C 0.14 3.16 5.02 86.38 0.43 3.59 16 15 N -0.72 -12.61 5.47 -463.08 -2.53 -15.14 16 16 C 0.51 10.15 7.82 87.66 0.69 10.84 16 17 O -0.58 -17.29 16.03 -3.01 -0.05 -17.34 16 18 C -0.10 -1.18 5.80 29.10 0.17 -1.01 16 19 C -0.05 -0.79 4.34 -20.06 -0.09 -0.88 16 20 C -0.12 -1.90 9.58 22.06 0.21 -1.69 16 21 C -0.09 -1.41 9.81 22.31 0.22 -1.19 16 22 C -0.13 -2.43 5.74 -21.31 -0.12 -2.55 16 23 C 0.14 2.41 11.05 85.31 0.94 3.36 16 24 N -0.52 -10.41 10.30 -195.53 -2.01 -12.43 16 25 C 0.06 0.98 11.07 84.09 0.93 1.91 16 26 C -0.16 -2.53 9.88 22.39 0.22 -2.31 16 27 C -0.04 -0.83 5.75 -21.29 -0.12 -0.95 16 28 C -0.11 -1.91 9.42 22.28 0.21 -1.70 16 29 C 0.13 4.67 6.77 86.68 0.59 5.25 16 30 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 31 H 0.03 1.12 5.57 -2.39 -0.01 1.11 16 32 H 0.04 1.58 6.62 -2.39 -0.02 1.56 16 33 H 0.07 2.06 8.05 -2.39 -0.02 2.04 16 34 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.05 1.36 7.93 -2.39 -0.02 1.34 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.42 5.05 8.47 -92.70 -0.79 4.27 16 38 H 0.14 0.77 8.07 -2.39 -0.02 0.75 16 39 H 0.13 0.94 8.08 -2.39 -0.02 0.92 16 40 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 41 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 42 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 43 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 44 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 45 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 46 H 0.03 0.91 7.68 -2.39 -0.02 0.90 16 47 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -81.66 383.49 1.46 -80.20 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.09 Total: 11.26 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 6.22 Total: -2.78 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -6.47 Total: -119.25 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.05 Total: -17.34 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.66 Total: 47.91 kcal Total: -81.66 1.46 -80.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267299669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.526 kcal (2) G-P(sol) polarization free energy of solvation -81.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds