Wall clock time and date at job start Tue Mar 31 2020 22:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99752 * 2 1 4 4 H 1.48503 * 109.46976 * 269.99703 * 3 2 1 5 5 H 1.48492 * 109.47285 * 29.99830 * 3 2 1 6 6 H 1.48508 * 109.47054 * 150.00075 * 3 2 1 7 7 C 1.38811 * 120.00693 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.01037 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99232 * 0.02562 * 7 2 1 10 10 C 1.47024 * 125.65497 * 359.97438 * 9 7 2 11 11 C 1.54319 * 107.27491 * 178.97390 * 10 9 7 12 12 C 1.55148 * 102.94319 * 337.80757 * 11 10 9 13 13 H 1.09002 * 111.00457 * 277.38934 * 12 11 10 14 14 C 1.53002 * 111.00606 * 153.57699 * 12 11 10 15 15 C 1.53000 * 109.47311 * 178.18002 * 14 12 11 16 16 N 1.46501 * 109.47347 * 179.97438 * 15 14 12 17 17 C 1.34780 * 119.99965 * 180.02562 * 16 15 14 18 18 O 1.21541 * 120.00033 * 359.97438 * 17 16 15 19 19 C 1.47880 * 119.99721 * 179.97438 * 17 16 15 20 20 C 1.40576 * 119.70890 * 0.02562 * 19 17 16 21 21 C 1.35813 * 120.74029 * 179.97438 * 20 19 17 22 22 C 1.40553 * 119.98455 * 0.02562 * 21 20 19 23 23 C 1.40818 * 121.14929 * 179.97438 * 22 21 20 24 24 C 1.36555 * 118.20097 * 180.02562 * 23 22 21 25 25 C 1.39419 * 119.93789 * 359.97438 * 24 23 22 26 26 N 1.31012 * 121.71381 * 359.97438 * 25 24 23 27 27 C 1.33743 * 121.34936 * 359.78035 * 26 25 24 28 28 C 1.38407 * 119.70907 * 179.97438 * 19 17 16 29 29 C 1.47476 * 125.62619 * 179.97438 * 9 7 2 30 30 H 0.96998 * 119.99957 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.87888 * 59.55334 * 10 9 7 32 32 H 1.08998 * 110.00724 * 298.46688 * 10 9 7 33 33 H 1.08999 * 110.71795 * 219.44060 * 11 10 9 34 34 H 1.08997 * 110.87102 * 96.24174 * 11 10 9 35 35 H 1.08994 * 109.47230 * 58.17799 * 14 12 11 36 36 H 1.08999 * 109.46869 * 298.17881 * 14 12 11 37 37 H 1.09008 * 109.47250 * 59.99664 * 15 14 12 38 38 H 1.09005 * 109.47318 * 300.00130 * 15 14 12 39 39 H 0.96999 * 119.99936 * 359.97438 * 16 15 14 40 40 H 1.07999 * 119.63146 * 359.95496 * 20 19 17 41 41 H 1.08003 * 120.01014 * 179.97438 * 21 20 19 42 42 H 1.08002 * 120.89884 * 359.97438 * 23 22 21 43 43 H 1.08000 * 120.02994 * 180.02562 * 24 23 22 44 44 H 1.07999 * 119.13997 * 180.02562 * 25 24 23 45 45 H 1.08002 * 120.22986 * 359.97438 * 28 19 17 46 46 H 1.08993 * 110.34951 * 85.25623 * 29 9 7 47 47 H 1.08994 * 110.40222 * 322.91282 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1374 -2.5328 0.0005 11 6 -0.4483 -4.0441 -0.0259 12 6 0.8521 -4.6562 -0.6103 13 1 0.8568 -4.5973 -1.6987 14 6 1.0372 -6.1009 -0.1414 15 6 2.3029 -6.6839 -0.7730 16 7 2.4805 -8.0669 -0.3236 17 6 3.5366 -8.7850 -0.7542 18 8 4.3414 -8.2854 -1.5157 19 6 3.7161 -10.1809 -0.3001 20 6 2.7812 -10.7528 0.5802 21 6 2.9253 -12.0330 1.0102 22 6 4.0190 -12.8012 0.5751 23 6 4.1927 -14.1306 1.0057 24 6 5.2771 -14.8215 0.5458 25 6 6.1747 -14.2072 -0.3264 26 7 6.0097 -12.9705 -0.7260 27 6 4.9665 -12.2403 -0.3169 28 6 4.8025 -10.9131 -0.7464 29 6 1.9343 -3.7313 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5574 -2.0524 -0.8832 32 1 -0.5566 -2.0837 0.9009 33 1 -1.2983 -4.2517 -0.6758 34 1 -0.6332 -4.4202 0.9803 35 1 0.1741 -6.6942 -0.4432 36 1 1.1304 -6.1213 0.9444 37 1 3.1661 -6.0905 -0.4713 38 1 2.2097 -6.6634 -1.8589 39 1 1.8383 -8.4655 0.2844 40 1 1.9390 -10.1675 0.9187 41 1 2.2002 -12.4605 1.6868 42 1 3.4877 -14.5911 1.6821 43 1 5.4387 -15.8430 0.8568 44 1 7.0277 -14.7657 -0.6825 45 1 5.5167 -10.4684 -1.4237 46 1 2.1677 -4.0416 1.0189 47 1 2.8334 -3.7411 -0.6155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267567556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:07 Heat of formation + Delta-G solvation = 38.439023 kcal Electronic energy + Delta-G solvation = -27282.517534 eV Core-core repulsion = 23430.416603 eV Total energy + Delta-G solvation = -3852.100930 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.34759 -39.86817 -37.85349 -37.11551 -35.33831 -33.95454 -33.07721 -31.53064 -30.52467 -30.48092 -28.96227 -26.82765 -25.33349 -24.41718 -24.29682 -22.69639 -22.19363 -21.28360 -19.97885 -19.63618 -18.68310 -17.96854 -17.35661 -16.82653 -16.46332 -15.82408 -15.73821 -15.05660 -14.95851 -14.71670 -14.55548 -14.44236 -14.20486 -13.94734 -13.76190 -13.59866 -13.53248 -12.48593 -12.32643 -12.32076 -12.10077 -12.07946 -11.88908 -11.81123 -11.53630 -11.10713 -11.02872 -10.84502 -10.74518 -10.26042 -10.11865 -9.98640 -9.95290 -9.83017 -9.74491 -9.58735 -9.35159 -9.12959 -8.76494 -8.55766 -6.77809 -5.66886 -2.99832 -0.20251 0.16309 1.42613 2.06668 2.90935 3.01355 3.43347 3.48309 3.50143 3.67284 3.80453 4.05506 4.20212 4.35313 4.38322 4.46644 4.54120 4.64026 4.69123 4.91828 4.98983 5.09668 5.27271 5.28274 5.37057 5.42154 5.51360 5.55189 5.62435 5.66735 5.74183 5.78773 5.82877 5.89042 5.99824 6.03094 6.11229 6.21341 6.24830 6.35034 6.41198 6.57529 6.62123 6.76262 7.00087 7.30433 7.41897 7.61173 7.67283 7.87214 8.01529 8.31063 9.27296 9.87753 10.54094 11.44950 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028824 B = 0.001656 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.175239 B =16901.655110 C =17508.018023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.101 4.101 13 H 0.076 0.924 14 C -0.116 4.116 15 C 0.117 3.883 16 N -0.722 5.722 17 C 0.554 3.446 18 O -0.530 6.530 19 C -0.115 4.115 20 C -0.090 4.090 21 C -0.100 4.100 22 C -0.088 4.088 23 C -0.061 4.061 24 C -0.168 4.168 25 C 0.130 3.870 26 N -0.466 5.466 27 C 0.116 3.884 28 C -0.023 4.023 29 C 0.139 3.861 30 H 0.251 0.749 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.399 0.601 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.162 0.838 45 H 0.152 0.848 46 H 0.017 0.983 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.848 -33.117 3.306 33.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.176 4.176 12 C -0.121 4.121 13 H 0.095 0.905 14 C -0.155 4.155 15 C -0.006 4.006 16 N -0.374 5.374 17 C 0.340 3.660 18 O -0.407 6.407 19 C -0.120 4.120 20 C -0.109 4.109 21 C -0.119 4.119 22 C -0.090 4.090 23 C -0.087 4.087 24 C -0.188 4.188 25 C -0.044 4.044 26 N -0.173 5.173 27 C -0.004 4.004 28 C -0.042 4.042 29 C 0.013 3.987 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.234 0.766 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.179 0.821 45 H 0.169 0.831 46 H 0.035 0.965 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.918 -31.967 2.175 32.416 hybrid contribution -0.541 0.252 0.948 1.121 sum 4.377 -31.715 3.124 32.168 Atomic orbital electron populations 1.69970 1.04864 1.24909 1.57380 1.24798 0.95727 0.97648 1.02438 0.86124 0.78583 0.83537 0.77569 1.21625 1.21713 1.20718 1.19084 0.90469 0.82512 1.43420 0.90470 1.44498 1.01727 0.99955 1.87128 1.21125 0.84367 0.88348 1.00944 1.22895 0.95913 0.99505 0.99332 1.22272 0.97685 0.91874 1.00228 0.90546 1.21751 0.96064 0.96806 1.00833 1.21564 0.99255 0.80065 0.99719 1.45989 1.26915 1.14840 1.49606 1.18167 0.81533 0.85299 0.80999 1.90815 1.43238 1.71512 1.35124 1.19958 0.96977 0.94687 1.00384 1.20984 0.98300 0.95537 0.96060 1.20881 0.96922 0.94012 1.00051 1.18972 0.96569 0.95241 0.98254 1.21533 0.97214 0.92597 0.97361 1.21994 0.95831 1.01815 0.99194 1.23049 0.97968 0.90614 0.92730 1.68048 1.19501 1.07027 1.22748 1.18780 0.91593 0.94390 0.95650 1.21280 0.95932 0.90716 0.96288 1.21625 0.94332 0.86112 0.96612 0.93848 0.93717 0.94110 0.92369 0.92597 0.91613 0.91250 0.90635 0.91129 0.76620 0.84925 0.84515 0.84076 0.84229 0.82075 0.83051 0.96509 0.94412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.57 10.31 55.49 0.57 -27.00 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.23 -6.47 10.28 -15.06 -0.15 -6.63 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.61 -15.78 3.40 -170.04 -0.58 -16.36 16 10 C 0.18 4.33 5.37 -3.07 -0.02 4.31 16 11 C -0.14 -2.49 6.42 -24.90 -0.16 -2.65 16 12 C -0.10 -1.67 3.04 -88.47 -0.27 -1.93 16 13 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 14 C -0.12 -1.40 4.84 -26.73 -0.13 -1.53 16 15 C 0.12 1.46 5.55 -4.04 -0.02 1.43 16 16 N -0.72 -7.58 5.50 -61.23 -0.34 -7.91 16 17 C 0.55 7.00 7.77 -12.31 -0.10 6.90 16 18 O -0.53 -8.85 16.30 5.33 0.09 -8.77 16 19 C -0.12 -1.19 5.87 -105.01 -0.62 -1.80 16 20 C -0.09 -0.65 9.44 -39.57 -0.37 -1.03 16 21 C -0.10 -0.64 9.74 -39.58 -0.39 -1.03 16 22 C -0.09 -0.70 5.75 -106.72 -0.61 -1.32 16 23 C -0.06 -0.33 9.89 -39.21 -0.39 -0.72 16 24 C -0.17 -0.82 10.03 -39.75 -0.40 -1.22 16 25 C 0.13 0.87 11.15 -17.46 -0.19 0.68 16 26 N -0.47 -4.77 10.34 -10.98 -0.11 -4.88 16 27 C 0.12 1.21 6.60 -84.87 -0.56 0.65 16 28 C -0.02 -0.25 9.56 -38.68 -0.37 -0.62 16 29 C 0.14 2.88 6.04 -2.50 -0.02 2.86 16 30 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.04 1.21 7.38 -51.93 -0.38 0.83 16 32 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.81 8.03 -51.93 -0.42 0.39 16 37 H 0.08 1.08 7.60 -51.92 -0.39 0.69 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.40 2.89 6.46 -40.82 -0.26 2.62 16 40 H 0.13 0.60 6.34 -52.49 -0.33 0.27 16 41 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 42 H 0.14 0.36 8.06 -52.49 -0.42 -0.07 16 43 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 44 H 0.16 0.59 8.06 -52.49 -0.42 0.16 16 45 H 0.15 1.84 7.60 -52.49 -0.40 1.44 16 46 H 0.02 0.35 7.96 -51.93 -0.41 -0.06 16 47 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 385.47 15.07 5.81 5.81 Total: -1.00 -35.82 385.47 -11.20 -47.02 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -6.76 Total: -1.42 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -4.86 Total: -4.04 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.46 Total: -56.15 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.82 -11.20 -47.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267567556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.461 kcal (2) G-P(sol) polarization free energy of solvation -35.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds