Wall clock time and date at job start Tue Mar 31 2020 22:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99752 * 2 1 4 4 H 1.48503 * 109.46976 * 269.99703 * 3 2 1 5 5 H 1.48492 * 109.47285 * 29.99830 * 3 2 1 6 6 H 1.48508 * 109.47054 * 150.00075 * 3 2 1 7 7 C 1.38811 * 120.00693 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.01037 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99232 * 0.02562 * 7 2 1 10 10 C 1.47024 * 125.65497 * 359.97438 * 9 7 2 11 11 C 1.54319 * 107.27491 * 178.97390 * 10 9 7 12 12 C 1.55148 * 102.94319 * 337.80757 * 11 10 9 13 13 H 1.09002 * 111.00457 * 277.38934 * 12 11 10 14 14 C 1.53002 * 111.00606 * 153.57699 * 12 11 10 15 15 C 1.53000 * 109.47311 * 178.18002 * 14 12 11 16 16 N 1.46501 * 109.47347 * 179.97438 * 15 14 12 17 17 C 1.34780 * 119.99965 * 180.02562 * 16 15 14 18 18 O 1.21541 * 120.00033 * 359.97438 * 17 16 15 19 19 C 1.47880 * 119.99721 * 179.97438 * 17 16 15 20 20 C 1.40576 * 119.70890 * 0.02562 * 19 17 16 21 21 C 1.35813 * 120.74029 * 179.97438 * 20 19 17 22 22 C 1.40553 * 119.98455 * 0.02562 * 21 20 19 23 23 C 1.40818 * 121.14929 * 179.97438 * 22 21 20 24 24 C 1.36555 * 118.20097 * 180.02562 * 23 22 21 25 25 C 1.39419 * 119.93789 * 359.97438 * 24 23 22 26 26 N 1.31012 * 121.71381 * 359.97438 * 25 24 23 27 27 C 1.33743 * 121.34936 * 359.78035 * 26 25 24 28 28 C 1.38407 * 119.70907 * 179.97438 * 19 17 16 29 29 C 1.47476 * 125.62619 * 179.97438 * 9 7 2 30 30 H 0.96998 * 119.99957 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.87888 * 59.55334 * 10 9 7 32 32 H 1.08998 * 110.00724 * 298.46688 * 10 9 7 33 33 H 1.08999 * 110.71795 * 219.44060 * 11 10 9 34 34 H 1.08997 * 110.87102 * 96.24174 * 11 10 9 35 35 H 1.08994 * 109.47230 * 58.17799 * 14 12 11 36 36 H 1.08999 * 109.46869 * 298.17881 * 14 12 11 37 37 H 1.09008 * 109.47250 * 59.99664 * 15 14 12 38 38 H 1.09005 * 109.47318 * 300.00130 * 15 14 12 39 39 H 0.96999 * 119.99936 * 359.97438 * 16 15 14 40 40 H 1.07999 * 119.63146 * 359.95496 * 20 19 17 41 41 H 1.08003 * 120.01014 * 179.97438 * 21 20 19 42 42 H 1.08002 * 120.89884 * 359.97438 * 23 22 21 43 43 H 1.08000 * 120.02994 * 180.02562 * 24 23 22 44 44 H 1.07999 * 119.13997 * 180.02562 * 25 24 23 45 45 H 1.08002 * 120.22986 * 359.97438 * 28 19 17 46 46 H 1.08993 * 110.34951 * 85.25623 * 29 9 7 47 47 H 1.08994 * 110.40222 * 322.91282 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1374 -2.5328 0.0005 11 6 -0.4483 -4.0441 -0.0259 12 6 0.8521 -4.6562 -0.6103 13 1 0.8568 -4.5973 -1.6987 14 6 1.0372 -6.1009 -0.1414 15 6 2.3029 -6.6839 -0.7730 16 7 2.4805 -8.0669 -0.3236 17 6 3.5366 -8.7850 -0.7542 18 8 4.3414 -8.2854 -1.5157 19 6 3.7161 -10.1809 -0.3001 20 6 2.7812 -10.7528 0.5802 21 6 2.9253 -12.0330 1.0102 22 6 4.0190 -12.8012 0.5751 23 6 4.1927 -14.1306 1.0057 24 6 5.2771 -14.8215 0.5458 25 6 6.1747 -14.2072 -0.3264 26 7 6.0097 -12.9705 -0.7260 27 6 4.9665 -12.2403 -0.3169 28 6 4.8025 -10.9131 -0.7464 29 6 1.9343 -3.7313 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5574 -2.0524 -0.8832 32 1 -0.5566 -2.0837 0.9009 33 1 -1.2983 -4.2517 -0.6758 34 1 -0.6332 -4.4202 0.9803 35 1 0.1741 -6.6942 -0.4432 36 1 1.1304 -6.1213 0.9444 37 1 3.1661 -6.0905 -0.4713 38 1 2.2097 -6.6634 -1.8589 39 1 1.8383 -8.4655 0.2844 40 1 1.9390 -10.1675 0.9187 41 1 2.2002 -12.4605 1.6868 42 1 3.4877 -14.5911 1.6821 43 1 5.4387 -15.8430 0.8568 44 1 7.0277 -14.7657 -0.6825 45 1 5.5167 -10.4684 -1.4237 46 1 2.1677 -4.0416 1.0189 47 1 2.8334 -3.7411 -0.6155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267567556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:06 Heat of formation + Delta-G solvation = 14.695679 kcal Electronic energy + Delta-G solvation = -27283.547122 eV Core-core repulsion = 23430.416603 eV Total energy + Delta-G solvation = -3853.130519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.93998 -40.77537 -39.40519 -37.77352 -36.56078 -34.79179 -34.47908 -32.75663 -31.65447 -31.04547 -30.60684 -28.27799 -26.77410 -25.59693 -24.87320 -23.67005 -23.04093 -22.18149 -21.81384 -20.95528 -19.49402 -18.87265 -18.51616 -17.90328 -17.19795 -16.92628 -16.79323 -16.59707 -16.24958 -15.58740 -15.49530 -15.44121 -15.12566 -14.98864 -14.78615 -14.56288 -14.12277 -13.92230 -13.84344 -13.68261 -13.31790 -13.08972 -12.95603 -12.82660 -12.73170 -12.64321 -12.50850 -12.24090 -12.01283 -11.80064 -11.59951 -11.56746 -11.38648 -11.31509 -11.09829 -10.70777 -10.49707 -10.22942 -9.81858 -9.33839 -8.88359 -7.85722 -5.20629 -0.78954 -0.36798 0.85697 1.43495 1.44225 1.45664 1.54328 2.00793 2.24591 2.48713 3.08229 3.27399 3.31937 3.52276 3.61917 3.67760 3.80161 3.83353 3.94879 3.99505 4.04359 4.07150 4.16844 4.25714 4.36433 4.38643 4.57743 4.62687 4.70430 4.73178 4.76895 4.87338 4.89840 4.95447 5.01706 5.08878 5.13271 5.16742 5.17744 5.26814 5.31063 5.36197 5.44667 5.52570 5.54188 5.72247 5.77587 5.80450 6.21192 6.46537 6.90762 7.11312 7.12069 7.79393 8.43348 9.24475 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028824 B = 0.001656 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.175239 B =16901.655110 C =17508.018023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.245 4.245 8 H 0.078 0.922 9 N -0.631 5.631 10 C 0.180 3.820 11 C -0.121 4.121 12 C -0.086 4.086 13 H 0.071 0.929 14 C -0.098 4.098 15 C 0.121 3.879 16 N -0.703 5.703 17 C 0.550 3.450 18 O -0.584 6.584 19 C -0.120 4.120 20 C -0.096 4.096 21 C -0.083 4.083 22 C -0.102 4.102 23 C -0.057 4.057 24 C -0.164 4.164 25 C 0.125 3.875 26 N -0.515 5.515 27 C 0.091 3.909 28 C -0.053 4.053 29 C 0.132 3.868 30 H 0.247 0.753 31 H 0.006 0.994 32 H 0.004 0.996 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.418 0.582 40 H 0.165 0.835 41 H 0.180 0.820 42 H 0.181 0.819 43 H 0.178 0.822 44 H 0.185 0.815 45 H 0.120 0.880 46 H 0.026 0.974 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.478 -36.927 5.433 37.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.196 1.196 7 C -0.374 4.374 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.055 3.945 11 C -0.159 4.159 12 C -0.106 4.106 13 H 0.089 0.911 14 C -0.136 4.136 15 C -0.003 4.003 16 N -0.355 5.355 17 C 0.338 3.662 18 O -0.465 6.465 19 C -0.125 4.125 20 C -0.115 4.115 21 C -0.101 4.101 22 C -0.104 4.104 23 C -0.083 4.083 24 C -0.183 4.183 25 C -0.047 4.047 26 N -0.224 5.224 27 C -0.028 4.028 28 C -0.073 4.073 29 C 0.007 3.993 30 H 0.056 0.944 31 H 0.024 0.976 32 H 0.023 0.977 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.258 0.742 40 H 0.183 0.817 41 H 0.197 0.803 42 H 0.198 0.802 43 H 0.196 0.804 44 H 0.202 0.798 45 H 0.138 0.862 46 H 0.044 0.956 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 3.533 -35.823 4.331 36.257 hybrid contribution -0.026 1.299 0.301 1.333 sum 3.506 -34.525 4.632 35.010 Atomic orbital electron populations 1.70194 1.06192 1.25195 1.58382 1.25650 0.96684 1.00984 1.02732 0.85092 0.77643 0.79203 0.77488 1.21329 1.21744 1.19553 1.19466 0.90918 0.84114 1.42906 0.90458 1.44852 1.02733 1.01210 1.86969 1.20949 0.83496 0.92666 0.97389 1.22754 0.97295 0.94379 1.01489 1.22154 0.94927 0.93805 0.99700 0.91069 1.21598 0.96839 0.93681 1.01507 1.21366 0.98768 0.80848 0.99283 1.45745 1.26661 1.13841 1.49267 1.18620 0.81112 0.86270 0.80176 1.90784 1.45223 1.72802 1.37657 1.19845 0.97841 0.93219 1.01612 1.21253 0.98365 0.96442 0.95403 1.21363 0.96480 0.93211 0.99053 1.19317 0.96488 0.96799 0.97807 1.22025 0.97837 0.91308 0.97105 1.22415 0.94817 1.03313 0.97763 1.23656 0.98996 0.89714 0.92378 1.68006 1.20655 1.08889 1.24868 1.18879 0.92849 0.94091 0.97013 1.21168 0.96557 0.92111 0.97493 1.21853 0.95384 0.84794 0.97230 0.94420 0.97560 0.97739 0.89909 0.90292 0.88086 0.89730 0.93026 0.92131 0.74246 0.81736 0.80292 0.80176 0.80447 0.79787 0.86165 0.95627 0.95153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.77 10.31 21.65 0.22 -58.55 16 2 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 3 Si 0.98 47.41 29.55 68.60 2.03 49.44 16 4 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.24 -14.37 10.28 84.03 0.86 -13.50 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 9 N -0.63 -33.60 3.40 -691.87 -2.35 -35.95 16 10 C 0.18 9.01 5.37 86.73 0.47 9.48 16 11 C -0.12 -4.12 6.42 31.78 0.20 -3.92 16 12 C -0.09 -2.69 3.04 -9.40 -0.03 -2.72 16 13 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 14 C -0.10 -2.03 4.84 30.60 0.15 -1.88 16 15 C 0.12 2.88 5.55 86.38 0.48 3.36 16 16 N -0.70 -13.63 5.50 -465.92 -2.56 -16.19 16 17 C 0.55 14.27 7.77 86.80 0.67 14.94 16 18 O -0.58 -21.05 16.30 -3.85 -0.06 -21.11 16 19 C -0.12 -2.52 5.87 -20.11 -0.12 -2.64 16 20 C -0.10 -1.14 9.44 22.28 0.21 -0.93 16 21 C -0.08 -0.75 9.74 22.27 0.22 -0.53 16 22 C -0.10 -1.39 5.75 -21.23 -0.12 -1.52 16 23 C -0.06 -0.40 9.89 22.51 0.22 -0.17 16 24 C -0.16 -1.04 10.03 22.16 0.22 -0.82 16 25 C 0.13 1.53 11.15 85.10 0.95 2.48 16 26 N -0.52 -11.02 10.34 -188.66 -1.95 -12.97 16 27 C 0.09 1.96 6.60 40.25 0.27 2.22 16 28 C -0.05 -1.32 9.56 22.85 0.22 -1.10 16 29 C 0.13 5.45 6.04 86.85 0.52 5.98 16 30 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 31 H 0.01 0.35 7.38 -2.39 -0.02 0.33 16 32 H 0.00 0.25 7.50 -2.39 -0.02 0.23 16 33 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.08 2.36 8.04 -2.39 -0.02 2.34 16 35 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 1.58 8.03 -2.39 -0.02 1.56 16 37 H 0.05 1.49 7.60 -2.38 -0.02 1.47 16 38 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.42 4.57 6.46 -92.71 -0.60 3.97 16 40 H 0.17 0.74 6.34 -2.91 -0.02 0.72 16 41 H 0.18 0.08 8.06 -2.91 -0.02 0.06 16 42 H 0.18 -0.20 8.06 -2.91 -0.02 -0.23 16 43 H 0.18 -0.26 8.06 -2.91 -0.02 -0.28 16 44 H 0.19 1.08 8.06 -2.91 -0.02 1.05 16 45 H 0.12 3.52 7.60 -2.91 -0.02 3.50 16 46 H 0.03 1.03 7.96 -2.39 -0.02 1.01 16 47 H 0.03 1.28 8.10 -2.39 -0.02 1.26 16 Total: -1.00 -86.61 385.47 1.57 -85.04 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 0.39 Total: 5.07 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 5.86 Total: 5.21 kcal Atomic # 7 Polarization: -117.01 SS G_CDS: -6.64 Total: -123.65 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.06 Total: -21.11 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -86.61 1.57 -85.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267567556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.736 kcal (2) G-P(sol) polarization free energy of solvation -86.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds