Wall clock time and date at job start Tue Mar 31 2020 22:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00084 * 2 1 4 4 H 1.48503 * 109.46977 * 269.99527 * 3 2 1 5 5 H 1.48496 * 109.47458 * 29.99266 * 3 2 1 6 6 H 1.48496 * 109.47348 * 150.00008 * 3 2 1 7 7 C 1.38814 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99736 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.64938 * 0.04283 * 9 7 2 11 11 C 1.54320 * 107.27083 * 181.02127 * 10 9 7 12 12 C 1.55157 * 102.94300 * 22.19420 * 11 10 9 13 13 H 1.09004 * 111.03777 * 82.58495 * 12 11 10 14 14 C 1.53006 * 111.00698 * 206.42229 * 12 11 10 15 15 C 1.52999 * 109.46997 * 178.65087 * 14 12 11 16 16 N 1.46506 * 109.46684 * 180.02562 * 15 14 12 17 17 C 1.34777 * 119.99873 * 180.02562 * 16 15 14 18 18 O 1.21548 * 119.99699 * 359.97438 * 17 16 15 19 19 C 1.47876 * 120.00205 * 180.02562 * 17 16 15 20 20 C 1.40580 * 119.70640 * 359.97438 * 19 17 16 21 21 C 1.35810 * 120.73778 * 179.97438 * 20 19 17 22 22 C 1.40546 * 119.98103 * 0.02562 * 21 20 19 23 23 C 1.40822 * 121.13210 * 179.97438 * 22 21 20 24 24 C 1.36552 * 118.20222 * 180.02562 * 23 22 21 25 25 C 1.39420 * 119.93558 * 359.97438 * 24 23 22 26 26 N 1.31027 * 121.71412 * 359.97438 * 25 24 23 27 27 C 1.33747 * 121.34645 * 0.05126 * 26 25 24 28 28 C 1.38406 * 119.71138 * 179.72514 * 19 17 16 29 29 C 1.47431 * 125.64611 * 180.02562 * 9 7 2 30 30 H 0.97005 * 119.99957 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.87936 * 300.43903 * 10 9 7 32 32 H 1.08999 * 109.88319 * 61.45371 * 10 9 7 33 33 H 1.08997 * 110.72211 * 263.83384 * 11 10 9 34 34 H 1.09004 * 110.72385 * 140.55325 * 11 10 9 35 35 H 1.09000 * 109.46866 * 58.64875 * 14 12 11 36 36 H 1.09001 * 109.46611 * 298.64992 * 14 12 11 37 37 H 1.09000 * 109.47486 * 60.00167 * 15 14 12 38 38 H 1.09001 * 109.47362 * 299.99445 * 15 14 12 39 39 H 0.96995 * 120.00050 * 359.72237 * 16 15 14 40 40 H 1.08001 * 119.62714 * 359.97420 * 20 19 17 41 41 H 1.08003 * 120.00556 * 179.97438 * 21 20 19 42 42 H 1.08008 * 120.90172 * 359.97438 * 23 22 21 43 43 H 1.07995 * 120.03507 * 180.02562 * 24 23 22 44 44 H 1.08004 * 119.14534 * 180.02562 * 25 24 23 45 45 H 1.08001 * 120.23209 * 0.02562 * 28 19 17 46 46 H 1.08999 * 110.36906 * 37.06799 * 29 9 7 47 47 H 1.09002 * 110.45535 * 274.79081 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6998 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1376 -2.5327 -0.0009 11 6 -0.4486 -4.0440 0.0260 12 6 0.8512 -4.6559 0.6121 13 1 0.8555 -4.5963 1.7005 14 6 1.0368 -6.1008 0.1442 15 6 2.3429 -6.6577 0.7142 16 7 2.5208 -8.0410 0.2656 17 6 3.6091 -8.7384 0.6472 18 8 4.4432 -8.2195 1.3631 19 6 3.7890 -10.1345 0.1941 20 6 2.8207 -10.7283 -0.6342 21 6 2.9651 -12.0088 -1.0631 22 6 4.0920 -12.7555 -0.6785 23 6 4.2659 -14.0851 -1.1085 24 6 5.3828 -14.7551 -0.6985 25 6 6.3129 -14.1198 0.1233 26 7 6.1487 -12.8822 0.5209 27 6 5.0768 -12.1704 0.1556 28 6 4.9117 -10.8433 0.5849 29 6 1.9334 -3.7312 0.0016 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5585 -2.0519 0.8822 32 1 -0.5538 -2.0823 -0.9020 33 1 -0.6307 -4.4183 -0.9814 34 1 -1.2992 -4.2513 0.6753 35 1 1.0747 -6.1280 -0.9448 36 1 0.2004 -6.7061 0.4940 37 1 2.3050 -6.6305 1.8032 38 1 3.1792 -6.0524 0.3645 39 1 1.8532 -8.4563 -0.3023 40 1 1.9524 -10.1598 -0.9328 41 1 2.2137 -12.4535 -1.6988 42 1 3.5352 -14.5623 -1.7448 43 1 5.5461 -15.7759 -1.0110 44 1 7.1920 -14.6616 0.4397 45 1 5.6539 -10.3803 1.2184 46 1 2.8322 -3.7403 0.6182 47 1 2.1690 -4.0435 -1.0158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267567557.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:12 Heat of formation + Delta-G solvation = 38.498012 kcal Electronic energy + Delta-G solvation = -27296.234623 eV Core-core repulsion = 23444.136251 eV Total energy + Delta-G solvation = -3852.098372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.34597 -39.86558 -37.86120 -37.11315 -35.33386 -33.95285 -33.07744 -31.52832 -30.52363 -30.47916 -28.96778 -26.81098 -25.33554 -24.41924 -24.29709 -22.69862 -22.20571 -21.27933 -19.97006 -19.62941 -18.67645 -17.96522 -17.35489 -16.82832 -16.46033 -15.81867 -15.74612 -15.06418 -14.95724 -14.71256 -14.55337 -14.44556 -14.20280 -13.94522 -13.74812 -13.59713 -13.53083 -12.47986 -12.33585 -12.31945 -12.09881 -12.07874 -11.89030 -11.81057 -11.53986 -11.09811 -11.02502 -10.85091 -10.73875 -10.25807 -10.11509 -9.98559 -9.95328 -9.83017 -9.74198 -9.58883 -9.34966 -9.12670 -8.76352 -8.55651 -6.77751 -5.66836 -2.99733 -0.20094 0.16446 1.42750 2.06829 2.91196 3.01589 3.43301 3.48383 3.50391 3.67448 3.80565 4.05639 4.20338 4.35424 4.38471 4.46798 4.54204 4.64182 4.69249 4.91770 4.99075 5.10074 5.27371 5.28376 5.37182 5.42257 5.51383 5.55298 5.62986 5.67154 5.74163 5.78282 5.83013 5.89391 5.99950 6.03091 6.11724 6.21536 6.24971 6.35299 6.40756 6.57479 6.62276 6.76422 7.00087 7.30720 7.41994 7.61269 7.67398 7.87325 8.01865 8.31239 9.27356 9.87863 10.54216 11.44991 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028472 B = 0.001665 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.172582 B =16813.564186 C =17450.446113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.176 3.824 11 C -0.138 4.138 12 C -0.101 4.101 13 H 0.076 0.924 14 C -0.116 4.116 15 C 0.116 3.884 16 N -0.722 5.722 17 C 0.554 3.446 18 O -0.530 6.530 19 C -0.115 4.115 20 C -0.090 4.090 21 C -0.100 4.100 22 C -0.088 4.088 23 C -0.061 4.061 24 C -0.168 4.168 25 C 0.130 3.870 26 N -0.466 5.466 27 C 0.117 3.883 28 C -0.023 4.023 29 C 0.139 3.861 30 H 0.251 0.749 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.398 0.602 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.162 0.838 45 H 0.152 0.848 46 H 0.038 0.962 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.897 -33.083 -3.322 33.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.176 4.176 12 C -0.121 4.121 13 H 0.095 0.905 14 C -0.154 4.154 15 C -0.006 4.006 16 N -0.373 5.373 17 C 0.340 3.660 18 O -0.407 6.407 19 C -0.120 4.120 20 C -0.109 4.109 21 C -0.119 4.119 22 C -0.090 4.090 23 C -0.087 4.087 24 C -0.188 4.188 25 C -0.044 4.044 26 N -0.173 5.173 27 C -0.004 4.004 28 C -0.042 4.042 29 C 0.013 3.987 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.234 0.766 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.179 0.821 45 H 0.170 0.830 46 H 0.056 0.944 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 5.010 -31.905 -2.239 32.374 hybrid contribution -0.578 0.229 -0.916 1.107 sum 4.433 -31.677 -3.155 32.141 Atomic orbital electron populations 1.69971 1.04866 1.24905 1.57380 1.24799 0.95730 0.97650 1.02439 0.86121 0.78617 0.83535 0.77532 1.21669 1.21701 1.20686 1.19085 0.90471 0.82510 1.43415 0.90470 1.44486 1.01737 0.99953 1.87117 1.21137 0.84376 0.88366 1.00959 1.22897 0.95923 0.99501 0.99311 1.22269 0.97691 0.91878 1.00218 0.90548 1.21750 0.95698 0.96914 1.01077 1.21566 0.99011 0.80142 0.99902 1.45989 1.23636 1.14991 1.52734 1.18167 0.81882 0.85376 0.80583 1.90818 1.42623 1.70476 1.36765 1.19958 0.96457 0.94711 1.00876 1.20985 0.98298 0.95400 0.96200 1.20879 0.96765 0.94168 1.00057 1.18968 0.96210 0.95225 0.98635 1.21535 0.97388 0.92718 0.97067 1.21992 0.95466 1.01833 0.99542 1.23055 0.98228 0.90451 0.92633 1.68056 1.20253 1.07585 1.21427 1.18778 0.91063 0.94397 0.96173 1.21279 0.96163 0.90924 0.95848 1.21607 0.94341 0.86117 0.96626 0.93851 0.93713 0.94085 0.92588 0.92347 0.91261 0.91626 0.91135 0.90586 0.76630 0.84927 0.84516 0.84076 0.84230 0.82074 0.83050 0.94421 0.96533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.58 10.31 55.49 0.57 -27.00 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.23 -6.47 10.28 -15.06 -0.15 -6.63 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.61 -15.79 3.39 -170.09 -0.58 -16.37 16 10 C 0.18 4.31 5.38 -3.07 -0.02 4.30 16 11 C -0.14 -2.49 6.42 -24.90 -0.16 -2.65 16 12 C -0.10 -1.67 3.07 -88.48 -0.27 -1.94 16 13 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 14 C -0.12 -1.40 4.84 -26.73 -0.13 -1.53 16 15 C 0.12 1.46 5.52 -4.04 -0.02 1.44 16 16 N -0.72 -7.60 5.50 -61.24 -0.34 -7.93 16 17 C 0.55 7.02 7.77 -12.32 -0.10 6.92 16 18 O -0.53 -8.88 16.30 5.32 0.09 -8.79 16 19 C -0.11 -1.19 5.87 -105.01 -0.62 -1.81 16 20 C -0.09 -0.66 9.44 -39.57 -0.37 -1.03 16 21 C -0.10 -0.64 9.74 -39.58 -0.39 -1.03 16 22 C -0.09 -0.71 5.75 -106.73 -0.61 -1.32 16 23 C -0.06 -0.34 9.88 -39.21 -0.39 -0.72 16 24 C -0.17 -0.83 10.03 -39.75 -0.40 -1.22 16 25 C 0.13 0.87 11.15 -17.45 -0.19 0.68 16 26 N -0.47 -4.77 10.34 -10.98 -0.11 -4.89 16 27 C 0.12 1.21 6.60 -84.88 -0.56 0.65 16 28 C -0.02 -0.25 9.56 -38.68 -0.37 -0.62 16 29 C 0.14 2.88 5.89 -2.54 -0.01 2.86 16 30 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.04 1.21 7.38 -51.93 -0.38 0.83 16 32 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 33 H 0.06 0.93 8.04 -51.93 -0.42 0.52 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.81 8.10 -51.93 -0.42 0.38 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 1.10 7.46 -51.93 -0.39 0.71 16 39 H 0.40 2.89 6.45 -40.82 -0.26 2.63 16 40 H 0.13 0.60 6.34 -52.49 -0.33 0.27 16 41 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 42 H 0.14 0.36 8.06 -52.48 -0.42 -0.07 16 43 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 44 H 0.16 0.59 8.06 -52.48 -0.42 0.17 16 45 H 0.15 1.84 7.60 -52.49 -0.40 1.44 16 46 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 47 H 0.02 0.34 8.00 -51.93 -0.42 -0.07 16 LS Contribution 385.27 15.07 5.81 5.81 Total: -1.00 -35.84 385.27 -11.20 -47.04 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.76 Total: -1.38 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -4.86 Total: -4.03 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.46 Total: -56.19 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.84 -11.20 -47.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267567557.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.542 kcal (2) G-P(sol) polarization free energy of solvation -35.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds