Wall clock time and date at job start Tue Mar 31 2020 22:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00084 * 2 1 4 4 H 1.48503 * 109.46977 * 269.99527 * 3 2 1 5 5 H 1.48496 * 109.47458 * 29.99266 * 3 2 1 6 6 H 1.48496 * 109.47348 * 150.00008 * 3 2 1 7 7 C 1.38814 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99736 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.64938 * 0.04283 * 9 7 2 11 11 C 1.54320 * 107.27083 * 181.02127 * 10 9 7 12 12 C 1.55157 * 102.94300 * 22.19420 * 11 10 9 13 13 H 1.09004 * 111.03777 * 82.58495 * 12 11 10 14 14 C 1.53006 * 111.00698 * 206.42229 * 12 11 10 15 15 C 1.52999 * 109.46997 * 178.65087 * 14 12 11 16 16 N 1.46506 * 109.46684 * 180.02562 * 15 14 12 17 17 C 1.34777 * 119.99873 * 180.02562 * 16 15 14 18 18 O 1.21548 * 119.99699 * 359.97438 * 17 16 15 19 19 C 1.47876 * 120.00205 * 180.02562 * 17 16 15 20 20 C 1.40580 * 119.70640 * 359.97438 * 19 17 16 21 21 C 1.35810 * 120.73778 * 179.97438 * 20 19 17 22 22 C 1.40546 * 119.98103 * 0.02562 * 21 20 19 23 23 C 1.40822 * 121.13210 * 179.97438 * 22 21 20 24 24 C 1.36552 * 118.20222 * 180.02562 * 23 22 21 25 25 C 1.39420 * 119.93558 * 359.97438 * 24 23 22 26 26 N 1.31027 * 121.71412 * 359.97438 * 25 24 23 27 27 C 1.33747 * 121.34645 * 0.05126 * 26 25 24 28 28 C 1.38406 * 119.71138 * 179.72514 * 19 17 16 29 29 C 1.47431 * 125.64611 * 180.02562 * 9 7 2 30 30 H 0.97005 * 119.99957 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.87936 * 300.43903 * 10 9 7 32 32 H 1.08999 * 109.88319 * 61.45371 * 10 9 7 33 33 H 1.08997 * 110.72211 * 263.83384 * 11 10 9 34 34 H 1.09004 * 110.72385 * 140.55325 * 11 10 9 35 35 H 1.09000 * 109.46866 * 58.64875 * 14 12 11 36 36 H 1.09001 * 109.46611 * 298.64992 * 14 12 11 37 37 H 1.09000 * 109.47486 * 60.00167 * 15 14 12 38 38 H 1.09001 * 109.47362 * 299.99445 * 15 14 12 39 39 H 0.96995 * 120.00050 * 359.72237 * 16 15 14 40 40 H 1.08001 * 119.62714 * 359.97420 * 20 19 17 41 41 H 1.08003 * 120.00556 * 179.97438 * 21 20 19 42 42 H 1.08008 * 120.90172 * 359.97438 * 23 22 21 43 43 H 1.07995 * 120.03507 * 180.02562 * 24 23 22 44 44 H 1.08004 * 119.14534 * 180.02562 * 25 24 23 45 45 H 1.08001 * 120.23209 * 0.02562 * 28 19 17 46 46 H 1.08999 * 110.36906 * 37.06799 * 29 9 7 47 47 H 1.09002 * 110.45535 * 274.79081 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6998 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1376 -2.5327 -0.0009 11 6 -0.4486 -4.0440 0.0260 12 6 0.8512 -4.6559 0.6121 13 1 0.8555 -4.5963 1.7005 14 6 1.0368 -6.1008 0.1442 15 6 2.3429 -6.6577 0.7142 16 7 2.5208 -8.0410 0.2656 17 6 3.6091 -8.7384 0.6472 18 8 4.4432 -8.2195 1.3631 19 6 3.7890 -10.1345 0.1941 20 6 2.8207 -10.7283 -0.6342 21 6 2.9651 -12.0088 -1.0631 22 6 4.0920 -12.7555 -0.6785 23 6 4.2659 -14.0851 -1.1085 24 6 5.3828 -14.7551 -0.6985 25 6 6.3129 -14.1198 0.1233 26 7 6.1487 -12.8822 0.5209 27 6 5.0768 -12.1704 0.1556 28 6 4.9117 -10.8433 0.5849 29 6 1.9334 -3.7312 0.0016 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5585 -2.0519 0.8822 32 1 -0.5538 -2.0823 -0.9020 33 1 -0.6307 -4.4183 -0.9814 34 1 -1.2992 -4.2513 0.6753 35 1 1.0747 -6.1280 -0.9448 36 1 0.2004 -6.7061 0.4940 37 1 2.3050 -6.6305 1.8032 38 1 3.1792 -6.0524 0.3645 39 1 1.8532 -8.4563 -0.3023 40 1 1.9524 -10.1598 -0.9328 41 1 2.2137 -12.4535 -1.6988 42 1 3.5352 -14.5623 -1.7448 43 1 5.5461 -15.7759 -1.0110 44 1 7.1920 -14.6616 0.4397 45 1 5.6539 -10.3803 1.2184 46 1 2.8322 -3.7403 0.6182 47 1 2.1690 -4.0435 -1.0158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267567557.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:11 Heat of formation + Delta-G solvation = 14.706875 kcal Electronic energy + Delta-G solvation = -27297.266284 eV Core-core repulsion = 23444.136251 eV Total energy + Delta-G solvation = -3853.130033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.94003 -40.77608 -39.41338 -37.77289 -36.56061 -34.79314 -34.47880 -32.75678 -31.65571 -31.04524 -30.61235 -28.26220 -26.78314 -25.59607 -24.87286 -23.68990 -23.04730 -22.18161 -21.79943 -20.94679 -19.49037 -18.87621 -18.51444 -17.90242 -17.20193 -16.94049 -16.79183 -16.59372 -16.25360 -15.58971 -15.49551 -15.43835 -15.12441 -14.98884 -14.78272 -14.56287 -14.11542 -13.92193 -13.85077 -13.68502 -13.32212 -13.09955 -12.95604 -12.80111 -12.73012 -12.67295 -12.50800 -12.22244 -12.02095 -11.79911 -11.59897 -11.56732 -11.39223 -11.31341 -11.09859 -10.70761 -10.49735 -10.22981 -9.81876 -9.33849 -8.88471 -7.85856 -5.20724 -0.78951 -0.36796 0.85686 1.43435 1.44223 1.45457 1.54345 2.00764 2.24572 2.48610 3.08230 3.27366 3.31770 3.52284 3.61912 3.67408 3.80007 3.83343 3.95008 4.00068 4.04354 4.07137 4.16640 4.25638 4.36421 4.38916 4.57739 4.62521 4.70703 4.73167 4.76755 4.87328 4.89742 4.95332 5.01157 5.08865 5.13305 5.16746 5.17443 5.27058 5.31052 5.36193 5.44588 5.52572 5.54037 5.72242 5.77594 5.80489 6.21196 6.46561 6.90727 7.11212 7.12128 7.79339 8.43284 9.24318 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028472 B = 0.001665 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.172582 B =16813.564186 C =17450.446113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.978 3.022 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.245 4.245 8 H 0.077 0.923 9 N -0.631 5.631 10 C 0.179 3.821 11 C -0.121 4.121 12 C -0.086 4.086 13 H 0.071 0.929 14 C -0.098 4.098 15 C 0.121 3.879 16 N -0.702 5.702 17 C 0.550 3.450 18 O -0.584 6.584 19 C -0.120 4.120 20 C -0.096 4.096 21 C -0.083 4.083 22 C -0.102 4.102 23 C -0.057 4.057 24 C -0.164 4.164 25 C 0.125 3.875 26 N -0.515 5.515 27 C 0.091 3.909 28 C -0.053 4.053 29 C 0.132 3.868 30 H 0.247 0.753 31 H 0.006 0.994 32 H 0.004 0.996 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.418 0.582 40 H 0.165 0.835 41 H 0.180 0.820 42 H 0.181 0.819 43 H 0.178 0.822 44 H 0.185 0.815 45 H 0.120 0.880 46 H 0.030 0.970 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.431 -36.945 -5.319 37.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.806 3.194 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.197 1.197 7 C -0.374 4.374 8 H 0.095 0.905 9 N -0.357 5.357 10 C 0.055 3.945 11 C -0.159 4.159 12 C -0.106 4.106 13 H 0.090 0.910 14 C -0.136 4.136 15 C -0.003 4.003 16 N -0.355 5.355 17 C 0.338 3.662 18 O -0.465 6.465 19 C -0.125 4.125 20 C -0.115 4.115 21 C -0.101 4.101 22 C -0.104 4.104 23 C -0.083 4.083 24 C -0.183 4.183 25 C -0.047 4.047 26 N -0.224 5.224 27 C -0.028 4.028 28 C -0.073 4.073 29 C 0.007 3.993 30 H 0.056 0.944 31 H 0.025 0.975 32 H 0.023 0.977 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.258 0.742 40 H 0.183 0.817 41 H 0.197 0.803 42 H 0.198 0.802 43 H 0.196 0.804 44 H 0.202 0.798 45 H 0.138 0.862 46 H 0.048 0.952 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.527 -35.813 -4.263 36.238 hybrid contribution -0.031 1.292 -0.315 1.330 sum 3.496 -34.521 -4.578 34.998 Atomic orbital electron populations 1.70196 1.06187 1.25195 1.58365 1.25650 0.96689 1.00980 1.02721 0.85089 0.77595 0.79189 0.77542 1.21144 1.21804 1.19673 1.19463 0.90908 0.84121 1.42931 0.90489 1.44840 1.02751 1.01197 1.86961 1.20964 0.83489 0.92691 0.97405 1.22757 0.97315 0.94357 1.01457 1.22154 0.94914 0.93798 0.99714 0.91021 1.21600 0.96302 0.93824 1.01885 1.21366 0.98634 0.80913 0.99377 1.45743 1.23458 1.14014 1.52288 1.18623 0.81497 0.86332 0.79740 1.90786 1.44582 1.71797 1.39315 1.19845 0.97319 0.93278 1.02071 1.21255 0.98351 0.96245 0.95613 1.21361 0.96490 0.93404 0.98844 1.19313 0.96109 0.96745 0.98244 1.22027 0.98169 0.91447 0.96628 1.22413 0.94490 1.03307 0.98097 1.23662 0.99433 0.89548 0.92106 1.68014 1.21338 1.09472 1.23598 1.18876 0.92335 0.94112 0.97508 1.21168 0.96631 0.92293 0.97247 1.21832 0.95396 0.84822 0.97211 0.94416 0.97531 0.97735 0.90316 0.89844 0.89724 0.88050 0.92156 0.93031 0.74242 0.81728 0.80281 0.80168 0.80445 0.79786 0.86177 0.95206 0.95705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.77 10.31 21.65 0.22 -58.55 16 2 C -0.07 -3.99 5.49 84.86 0.47 -3.53 16 3 Si 0.98 47.46 29.55 68.60 2.03 49.49 16 4 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.25 -14.40 10.28 84.03 0.86 -13.54 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.63 -33.64 3.39 -692.03 -2.35 -35.99 16 10 C 0.18 8.99 5.38 86.73 0.47 9.46 16 11 C -0.12 -4.11 6.42 31.78 0.20 -3.90 16 12 C -0.09 -2.69 3.07 -9.41 -0.03 -2.72 16 13 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 14 C -0.10 -2.02 4.84 30.60 0.15 -1.88 16 15 C 0.12 2.89 5.52 86.38 0.48 3.36 16 16 N -0.70 -13.68 5.50 -465.93 -2.56 -16.24 16 17 C 0.55 14.32 7.77 86.80 0.67 14.99 16 18 O -0.58 -21.13 16.30 -3.87 -0.06 -21.19 16 19 C -0.12 -2.52 5.87 -20.11 -0.12 -2.64 16 20 C -0.10 -1.14 9.44 22.28 0.21 -0.93 16 21 C -0.08 -0.75 9.74 22.27 0.22 -0.53 16 22 C -0.10 -1.40 5.75 -21.23 -0.12 -1.52 16 23 C -0.06 -0.40 9.88 22.51 0.22 -0.17 16 24 C -0.16 -1.04 10.03 22.16 0.22 -0.82 16 25 C 0.13 1.54 11.15 85.10 0.95 2.49 16 26 N -0.52 -11.04 10.34 -188.65 -1.95 -12.99 16 27 C 0.09 1.96 6.60 40.25 0.27 2.23 16 28 C -0.05 -1.33 9.56 22.85 0.22 -1.11 16 29 C 0.13 5.47 5.89 86.85 0.51 5.98 16 30 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 31 H 0.01 0.36 7.38 -2.39 -0.02 0.35 16 32 H 0.00 0.25 7.50 -2.39 -0.02 0.23 16 33 H 0.08 2.36 8.04 -2.39 -0.02 2.34 16 34 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.08 1.58 8.10 -2.39 -0.02 1.56 16 36 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.50 7.46 -2.39 -0.02 1.48 16 39 H 0.42 4.58 6.45 -92.71 -0.60 3.98 16 40 H 0.17 0.74 6.34 -2.91 -0.02 0.72 16 41 H 0.18 0.08 8.06 -2.91 -0.02 0.06 16 42 H 0.18 -0.20 8.06 -2.91 -0.02 -0.23 16 43 H 0.18 -0.26 8.06 -2.91 -0.02 -0.28 16 44 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 45 H 0.12 3.53 7.60 -2.91 -0.02 3.51 16 46 H 0.03 1.26 8.07 -2.39 -0.02 1.24 16 47 H 0.03 1.00 8.00 -2.39 -0.02 0.98 16 Total: -1.00 -86.74 385.27 1.56 -85.19 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 0.39 Total: 5.06 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 5.85 Total: 5.22 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -6.64 Total: -123.77 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.06 Total: -21.19 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -86.74 1.56 -85.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267567557.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.894 kcal (2) G-P(sol) polarization free energy of solvation -86.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds