Wall clock time and date at job start Tue Mar 31 2020 22:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00488 * 2 1 4 4 H 1.48501 * 109.47020 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47090 * 300.00229 * 3 2 1 6 6 H 1.48502 * 109.46830 * 60.00299 * 3 2 1 7 7 C 1.38815 * 119.99425 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99934 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00295 * 0.02562 * 7 2 1 10 10 C 1.46508 * 120.00341 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47281 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.54029 * 307.61108 * 11 10 9 13 13 C 1.54898 * 110.48697 * 70.22552 * 11 10 9 14 14 C 1.54893 * 102.74772 * 156.61777 * 13 11 10 15 15 C 1.54264 * 104.19831 * 322.06064 * 14 13 11 16 16 C 1.53873 * 106.59935 * 23.60634 * 15 14 13 17 17 H 1.08998 * 110.03639 * 240.66885 * 16 15 14 18 18 N 1.46506 * 110.03129 * 119.28680 * 16 15 14 19 19 C 1.34768 * 119.99786 * 86.45434 * 18 16 15 20 20 O 1.21583 * 120.00418 * 0.02562 * 19 18 16 21 21 C 1.47568 * 119.99752 * 179.97438 * 19 18 16 22 22 C 1.38709 * 120.43603 * 354.10666 * 21 19 18 23 23 C 1.39001 * 120.75638 * 180.02562 * 22 21 19 24 24 C 1.36341 * 121.18929 * 359.94430 * 23 22 21 25 25 C 1.40361 * 119.92778 * 0.03157 * 24 23 22 26 26 C 1.40682 * 122.09315 * 179.97438 * 25 24 23 27 27 C 1.36263 * 118.66403 * 180.02562 * 26 25 24 28 28 N 1.32517 * 121.83777 * 359.73660 * 27 26 25 29 29 C 1.31312 * 122.71893 * 0.54103 * 28 27 26 30 30 C 1.40136 * 119.92427 * 359.47700 * 29 28 27 31 31 H 0.97010 * 119.99327 * 359.97438 * 1 2 3 32 32 H 0.97003 * 119.99977 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.46983 * 59.99639 * 10 9 7 34 34 H 1.09001 * 109.46762 * 299.99845 * 10 9 7 35 35 H 1.08996 * 110.75217 * 38.30408 * 13 11 10 36 36 H 1.08995 * 110.91256 * 275.00700 * 13 11 10 37 37 H 1.09000 * 110.48494 * 203.37647 * 14 13 11 38 38 H 1.08998 * 110.48322 * 80.73844 * 14 13 11 39 39 H 1.08999 * 110.02860 * 264.32574 * 15 14 13 40 40 H 1.08995 * 110.03619 * 142.89137 * 15 14 13 41 41 H 0.97000 * 120.00109 * 266.45193 * 18 16 15 42 42 H 1.07994 * 119.62156 * 359.97059 * 22 21 19 43 43 H 1.07997 * 119.40661 * 179.97438 * 23 22 21 44 44 H 1.07997 * 120.03984 * 180.02562 * 24 23 22 45 45 H 1.07994 * 120.66999 * 0.03821 * 26 25 24 46 46 H 1.08000 * 119.08360 * 179.97438 * 27 26 25 47 47 H 1.08002 * 120.03502 * 179.74721 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3963 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6569 -0.0027 11 6 1.0635 -4.8197 -0.0031 12 1 0.3418 -4.7061 0.8058 13 6 0.3376 -4.9118 -1.3684 14 6 -0.1131 -6.3929 -1.4166 15 6 1.0587 -7.1660 -0.7771 16 6 1.8068 -6.1658 0.1216 17 1 2.8370 -6.0571 -0.2176 18 7 1.7827 -6.6253 1.5125 19 6 2.7262 -7.4792 1.9564 20 8 3.5976 -7.8677 1.2029 21 6 2.7022 -7.9416 3.3576 22 6 1.7887 -7.4118 4.2569 23 6 1.7606 -7.8421 5.5783 24 6 2.6254 -8.7948 6.0291 25 6 3.5659 -9.3580 5.1525 26 6 4.4797 -10.3432 5.5691 27 6 5.3632 -10.8418 4.6593 28 7 5.3787 -10.4279 3.4005 29 6 4.5588 -9.5087 2.9455 30 6 3.6108 -8.9320 3.8013 31 1 -0.4850 0.8402 0.0004 32 1 0.3554 -2.3880 -0.0023 33 1 2.6845 -3.7155 0.8872 34 1 2.6844 -3.7139 -0.8928 35 1 1.0232 -4.6898 -2.1861 36 1 -0.5240 -4.2447 -1.3966 37 1 -0.2635 -6.7125 -2.4478 38 1 -1.0248 -6.5333 -0.8360 39 1 1.7255 -7.5420 -1.5529 40 1 0.6777 -7.9933 -0.1783 41 1 1.0877 -6.3151 2.1138 42 1 1.0919 -6.6556 3.9268 43 1 1.0404 -7.4145 6.2601 44 1 2.5870 -9.1158 7.0596 45 1 4.4808 -10.6975 6.5893 46 1 6.0680 -11.5981 4.9719 47 1 4.6120 -9.2008 1.9117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268291368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:11 Heat of formation + Delta-G solvation = 5.069587 kcal Electronic energy + Delta-G solvation = -28491.349289 eV Core-core repulsion = 24637.801351 eV Total energy + Delta-G solvation = -3853.547938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.14593 -40.86566 -39.20318 -38.18667 -36.34421 -34.90369 -33.89766 -33.29615 -32.18801 -30.91427 -30.19905 -28.58805 -26.40268 -25.60820 -24.51666 -24.42773 -23.69410 -22.16786 -21.22914 -20.94472 -19.35511 -18.90253 -18.67545 -17.90981 -17.41275 -17.07400 -16.64812 -16.36681 -16.20185 -15.82315 -15.66571 -15.23135 -15.09281 -14.99017 -14.95104 -14.65767 -14.50971 -14.27233 -13.70729 -13.48151 -13.18725 -13.10814 -13.02841 -12.89444 -12.78218 -12.56292 -12.45379 -12.13608 -11.96294 -11.86238 -11.63214 -11.59229 -11.42544 -11.19693 -10.96339 -10.89184 -10.40320 -10.19218 -10.15790 -9.10738 -8.99969 -7.96299 -5.24184 -0.92795 -0.13590 0.56748 1.46644 1.47303 1.57233 1.70206 2.01949 2.20668 2.54878 3.07001 3.36607 3.40251 3.47743 3.56066 3.66965 3.71278 3.74337 3.83826 3.89863 3.94548 4.14508 4.19611 4.38716 4.40714 4.47126 4.51378 4.57205 4.62497 4.66064 4.70091 4.74043 4.79441 4.88348 4.97842 4.99121 5.04067 5.13585 5.18858 5.20386 5.24774 5.33333 5.33807 5.46778 5.50956 5.58293 5.65930 5.77905 6.26631 6.43716 6.99007 7.13348 7.33828 8.08171 8.34072 9.27009 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013092 B = 0.002519 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.172030 B =11114.367294 C =12017.597855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.738 5.738 10 C 0.162 3.838 11 C -0.089 4.089 12 H 0.088 0.912 13 C -0.111 4.111 14 C -0.111 4.111 15 C -0.124 4.124 16 C 0.153 3.847 17 H 0.073 0.927 18 N -0.700 5.700 19 C 0.557 3.443 20 O -0.567 6.567 21 C -0.132 4.132 22 C -0.061 4.061 23 C -0.109 4.109 24 C -0.073 4.073 25 C -0.052 4.052 26 C -0.143 4.143 27 C 0.051 3.949 28 N -0.514 5.514 29 C 0.113 3.887 30 C -0.094 4.094 31 H 0.252 0.748 32 H 0.377 0.623 33 H 0.011 0.989 34 H 0.014 0.986 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.412 0.588 42 H 0.154 0.846 43 H 0.172 0.828 44 H 0.174 0.826 45 H 0.179 0.821 46 H 0.178 0.822 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.046 -23.243 13.518 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.799 3.201 4 H -0.196 1.196 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.086 0.914 9 N -0.381 5.381 10 C 0.035 3.965 11 C -0.109 4.109 12 H 0.106 0.894 13 C -0.149 4.149 14 C -0.149 4.149 15 C -0.162 4.162 16 C 0.048 3.952 17 H 0.091 0.909 18 N -0.351 5.351 19 C 0.346 3.654 20 O -0.449 6.449 21 C -0.136 4.136 22 C -0.080 4.080 23 C -0.128 4.128 24 C -0.091 4.091 25 C -0.057 4.057 26 C -0.162 4.162 27 C -0.092 4.092 28 N -0.223 5.223 29 C -0.056 4.056 30 C -0.097 4.097 31 H 0.061 0.939 32 H 0.210 0.790 33 H 0.029 0.971 34 H 0.031 0.969 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.250 0.750 42 H 0.172 0.828 43 H 0.189 0.811 44 H 0.191 0.809 45 H 0.197 0.803 46 H 0.195 0.805 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.482 -23.866 12.505 26.984 hybrid contribution -0.516 1.762 0.386 1.876 sum 0.966 -22.104 12.891 25.607 Atomic orbital electron populations 1.69799 1.06347 1.26011 1.59392 1.25483 0.96414 1.00776 1.03634 0.85138 0.78096 0.80087 0.76828 1.19570 1.21916 1.21754 1.19600 0.91280 0.85558 1.41316 0.91371 1.42458 1.05640 1.00727 1.89270 1.20774 0.93654 0.85085 0.96976 1.22265 0.96977 0.91983 0.99633 0.89365 1.22410 0.99677 0.97266 0.95566 1.22320 0.97742 0.93252 1.01583 1.22473 0.97481 0.97576 0.98690 1.21562 1.00149 0.92691 0.80806 0.90859 1.45988 1.30081 1.46080 1.12979 1.18419 0.81070 0.78596 0.87297 1.90563 1.37712 1.58113 1.58495 1.19806 0.99954 1.00360 0.93529 1.21864 0.95298 0.97140 0.93729 1.21371 0.99601 0.96614 0.95222 1.21640 0.92204 0.94623 1.00597 1.18557 0.97613 0.97219 0.92335 1.22322 0.94929 0.96227 1.02706 1.22815 0.98639 0.99473 0.88280 1.67577 1.24091 1.12621 1.18022 1.24304 0.89306 0.90306 1.01733 1.18979 0.97628 0.97855 0.95225 0.93906 0.79007 0.97149 0.96854 0.92267 0.91873 0.90358 0.90296 0.91300 0.90753 0.74974 0.82797 0.81064 0.80881 0.80346 0.80542 0.80650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.90 13.06 21.65 0.28 -57.61 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 3 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.25 -13.77 9.99 84.04 0.84 -12.93 16 8 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 9 N -0.74 -36.82 5.49 -343.44 -1.89 -38.71 16 10 C 0.16 6.46 5.54 86.38 0.48 6.94 16 11 C -0.09 -2.64 2.58 -9.72 -0.03 -2.67 16 12 H 0.09 2.48 7.73 -2.39 -0.02 2.46 16 13 C -0.11 -3.13 6.19 31.89 0.20 -2.93 16 14 C -0.11 -2.35 6.83 31.67 0.22 -2.13 16 15 C -0.12 -2.78 6.59 31.32 0.21 -2.57 16 16 C 0.15 4.03 2.80 45.72 0.13 4.16 16 17 H 0.07 2.30 7.30 -2.39 -0.02 2.28 16 18 N -0.70 -16.10 4.94 -442.23 -2.19 -18.29 16 19 C 0.56 14.92 7.72 86.71 0.67 15.59 16 20 O -0.57 -18.98 13.15 -3.98 -0.05 -19.04 16 21 C -0.13 -2.97 5.90 -19.89 -0.12 -3.09 16 22 C -0.06 -0.92 9.51 22.57 0.21 -0.71 16 23 C -0.11 -1.14 9.93 22.01 0.22 -0.92 16 24 C -0.07 -0.80 9.79 22.34 0.22 -0.58 16 25 C -0.05 -0.94 5.75 -21.30 -0.12 -1.06 16 26 C -0.14 -2.12 9.88 22.41 0.22 -1.89 16 27 C 0.05 0.99 11.07 84.13 0.93 1.92 16 28 N -0.51 -14.06 10.30 -195.72 -2.02 -16.08 16 29 C 0.11 3.26 10.49 85.23 0.89 4.15 16 30 C -0.09 -2.31 5.76 -21.14 -0.12 -2.44 16 31 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 32 H 0.38 19.57 7.63 -92.71 -0.71 18.86 16 33 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.01 0.56 8.02 -2.39 -0.02 0.54 16 35 H 0.06 1.80 7.97 -2.39 -0.02 1.78 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.07 1.56 7.92 -2.39 -0.02 1.54 16 41 H 0.41 7.24 6.41 -92.71 -0.59 6.64 16 42 H 0.15 1.60 6.42 -2.91 -0.02 1.58 16 43 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 44 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 45 H 0.18 1.08 8.06 -2.91 -0.02 1.05 16 46 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 47 H 0.18 5.74 4.98 -2.93 -0.01 5.73 16 Total: -1.00 -75.20 383.10 1.39 -73.81 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: -0.29 Total: 32.51 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 5.51 Total: -4.72 kcal Atomic # 7 Polarization: -124.88 SS G_CDS: -5.81 Total: -130.68 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.05 Total: -19.04 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -75.20 1.39 -73.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268291368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.881 kcal (2) G-P(sol) polarization free energy of solvation -75.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds