Wall clock time and date at job start Tue Mar 31 2020 22:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99825 * 2 1 4 4 O 1.20830 * 120.00242 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99663 * 179.97438 * 3 2 1 6 6 H 1.08998 * 115.54919 * 30.19147 * 5 3 2 7 7 C 1.52992 * 117.49560 * 244.51856 * 5 3 2 8 8 C 1.52991 * 60.03463 * 252.47704 * 7 5 3 9 9 H 1.08994 * 117.50430 * 252.52227 * 8 7 5 10 10 C 1.50705 * 117.49697 * 107.50467 * 8 7 5 11 11 O 1.21276 * 120.00302 * 7.72835 * 10 8 7 12 12 N 1.34783 * 119.99798 * 187.73375 * 10 8 7 13 13 C 1.46504 * 119.99733 * 179.97438 * 12 10 8 14 14 C 1.50697 * 109.46792 * 179.97438 * 13 12 10 15 15 C 1.31000 * 119.99761 * 125.00013 * 14 13 12 16 16 C 1.50706 * 120.00157 * 179.97438 * 15 14 13 17 17 N 1.46898 * 109.47023 * 125.00482 * 16 15 14 18 18 C 1.46900 * 110.99861 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.46988 * 179.97438 * 18 17 16 20 20 O 1.21293 * 120.00482 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99897 * 179.97438 * 19 18 17 22 22 C 1.37106 * 120.00166 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99212 * 0.02562 * 22 21 19 24 24 C 1.38950 * 120.00114 * 180.02562 * 22 21 19 25 25 N 1.31412 * 119.99965 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99808 * 180.02562 * 24 22 21 27 27 H 1.48491 * 109.47308 * 59.99854 * 26 24 22 28 28 H 1.48504 * 109.46853 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.46866 * 299.99425 * 26 24 22 30 30 H 1.09003 * 109.47237 * 59.99974 * 1 2 3 31 31 H 1.09003 * 109.47372 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47633 * 300.00332 * 1 2 3 33 33 H 1.09004 * 117.50720 * 359.97438 * 7 5 3 34 34 H 1.09005 * 117.49772 * 144.97473 * 7 5 3 35 35 H 0.96993 * 119.99962 * 0.02562 * 12 10 8 36 36 H 1.08998 * 109.47085 * 299.99988 * 13 12 10 37 37 H 1.08996 * 109.46701 * 60.00188 * 13 12 10 38 38 H 1.07994 * 120.00451 * 305.00521 * 14 13 12 39 39 H 1.08003 * 120.00012 * 0.02562 * 15 14 13 40 40 H 1.09003 * 109.47080 * 245.00297 * 16 15 14 41 41 H 1.09000 * 109.46752 * 5.00207 * 16 15 14 42 42 H 1.00905 * 110.99837 * 303.95169 * 17 16 15 43 43 H 1.08994 * 109.47344 * 299.99991 * 18 17 16 44 44 H 1.08998 * 109.46919 * 60.00036 * 18 17 16 45 45 H 0.96997 * 120.00249 * 0.02562 * 21 19 18 46 46 H 0.96994 * 119.99764 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0804 0.4505 -0.4936 7 6 4.2407 1.8951 1.2258 8 6 4.2021 2.6639 -0.0963 9 1 5.1342 2.7529 -0.6542 10 6 3.2755 3.8491 -0.1853 11 8 2.7026 4.2468 0.8069 12 7 3.0833 4.4670 -1.3676 13 6 2.1821 5.6188 -1.4542 14 6 2.1443 6.1213 -2.8744 15 6 0.9982 6.2356 -3.4984 16 6 0.9603 6.7387 -4.9185 17 7 0.2574 5.7648 -5.7644 18 6 0.2015 6.2226 -7.1591 19 6 -0.5244 5.1999 -7.9947 20 8 -0.9535 4.1894 -7.4790 21 7 -0.6979 5.4087 -9.3148 22 6 -1.3588 4.4786 -10.0750 23 1 -1.7407 3.5788 -9.6157 24 6 -1.5371 4.6935 -11.4361 25 7 -1.0728 5.7886 -11.9948 26 14 -2.4383 3.4265 -12.4716 27 1 -3.8184 3.2536 -11.9518 28 1 -2.4941 3.8889 -13.8817 29 1 -1.7178 2.1297 -12.4046 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 3.5959 2.2466 2.0314 34 1 5.1984 1.4785 1.5381 35 1 3.5412 4.1487 -2.1612 36 1 1.1798 5.3197 -1.1474 37 1 2.5416 6.4114 -0.7981 38 1 3.0620 6.3871 -3.3778 39 1 0.0803 5.9701 -2.9949 40 1 0.4361 7.6939 -4.9517 41 1 1.9785 6.8701 -5.2847 42 1 0.6866 4.8539 -5.7001 43 1 -0.3276 7.1742 -7.2083 44 1 1.2146 6.3500 -7.5406 45 1 -0.3551 6.2170 -9.7272 46 1 -1.1976 5.9388 -12.9448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268523389.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:53 Heat of formation + Delta-G solvation = -107.836057 kcal Electronic energy + Delta-G solvation = -27898.880524 eV Core-core repulsion = 23597.294616 eV Total energy + Delta-G solvation = -4301.585908 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20694 -39.71805 -38.34076 -37.39227 -36.62243 -36.10241 -35.09216 -33.90468 -32.74849 -31.21891 -28.80908 -28.43836 -26.46075 -25.15764 -24.53166 -23.61334 -22.41344 -21.13655 -20.54055 -19.71918 -19.17734 -18.55387 -17.89841 -17.40967 -16.67413 -16.50893 -16.26470 -15.85937 -15.64110 -15.46387 -15.01896 -14.56976 -14.42647 -14.35859 -13.84133 -13.81635 -13.57646 -13.50640 -13.37945 -13.02834 -12.71361 -12.56743 -12.30805 -12.15741 -11.86822 -11.59455 -11.47836 -11.33258 -11.22114 -11.10976 -11.07171 -11.01628 -10.72445 -10.44875 -10.22183 -10.12009 -9.51071 -9.48740 -9.07473 -8.48606 -8.08600 -7.96858 -6.42357 -3.83270 1.65654 1.84679 2.16687 2.52058 3.02770 3.19627 3.25227 3.29788 3.38158 3.89974 4.08382 4.11405 4.13506 4.26778 4.34787 4.51661 4.67507 4.73580 4.84682 4.90582 4.94057 5.08438 5.09461 5.13985 5.24213 5.28936 5.31052 5.44237 5.46931 5.51402 5.65232 5.73943 5.80074 5.96180 6.05657 6.23400 6.25114 6.48042 6.57746 7.18120 7.34142 7.43240 7.54372 7.63781 8.05386 8.12376 8.60559 9.17023 9.53373 10.04965 10.75304 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012824 B = 0.001800 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.830132 B =15550.828734 C =17075.306721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.478 3.522 4 O -0.479 6.479 5 C -0.145 4.145 6 H 0.146 0.854 7 C -0.113 4.113 8 C -0.159 4.159 9 H 0.140 0.860 10 C 0.552 3.448 11 O -0.526 6.526 12 N -0.721 5.721 13 C 0.158 3.842 14 C -0.190 4.190 15 C -0.110 4.110 16 C 0.083 3.917 17 N -0.666 5.666 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.932 3.068 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.400 0.600 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.082 0.918 41 H 0.032 0.968 42 H 0.350 0.650 43 H 0.087 0.913 44 H 0.044 0.956 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.170 -4.887 23.444 27.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.320 3.680 4 O -0.364 6.364 5 C -0.165 4.165 6 H 0.164 0.836 7 C -0.150 4.150 8 C -0.181 4.181 9 H 0.158 0.842 10 C 0.337 3.663 11 O -0.402 6.402 12 N -0.373 5.373 13 C 0.035 3.965 14 C -0.210 4.210 15 C -0.129 4.129 16 C -0.046 4.046 17 N -0.298 5.298 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.759 3.241 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.233 0.767 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.100 0.900 41 H 0.050 0.950 42 H 0.170 0.830 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.226 0.774 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.556 -4.652 24.453 27.879 hybrid contribution 0.704 -0.311 -1.759 1.920 sum 13.260 -4.963 22.694 26.749 Atomic orbital electron populations 1.23324 0.75570 1.03887 1.02955 1.86439 1.23869 1.32803 1.84164 1.22507 0.90357 0.81800 0.73364 1.90801 1.66312 1.35723 1.43582 1.21783 0.89353 0.98003 1.07324 0.83622 1.23122 1.02618 0.98491 0.90810 1.22450 1.01066 0.90180 1.04360 0.84193 1.19141 0.81059 0.82752 0.83345 1.90681 1.48090 1.65310 1.36073 1.45762 1.48114 1.32885 1.10515 1.20249 0.94585 0.87403 0.94281 1.22826 0.98487 1.03585 0.96056 1.23000 0.98215 0.96282 0.95424 1.21076 0.96617 0.96632 0.90262 1.60040 1.57197 1.05339 1.07254 1.21687 0.99144 0.99018 0.88373 1.19801 0.85933 0.88692 0.83017 1.90525 1.54316 1.29940 1.71946 1.41858 1.50464 1.21443 1.06245 1.19658 1.31709 1.01763 0.89817 0.87979 1.25270 0.97972 0.97554 0.97178 1.69603 1.46221 1.25634 1.12870 0.85906 0.79862 0.80173 0.78206 1.19866 1.20976 1.19925 0.91461 0.87868 0.91798 0.86616 0.86050 0.76651 0.90904 0.91042 0.86839 0.86293 0.89962 0.94984 0.83034 0.89483 0.93842 0.77442 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.52 10.57 -39.26 -0.41 -3.93 16 3 C 0.48 5.16 7.71 36.01 0.28 5.43 16 4 O -0.48 -6.83 13.14 -25.82 -0.34 -7.17 16 5 C -0.15 -1.01 6.30 -91.74 -0.58 -1.58 16 6 H 0.15 0.59 8.14 -51.93 -0.42 0.17 16 7 C -0.11 -0.68 9.74 -26.74 -0.26 -0.94 16 8 C -0.16 -1.11 6.19 -91.74 -0.57 -1.68 16 9 H 0.14 0.50 8.14 -51.93 -0.42 0.08 16 10 C 0.55 6.16 5.37 -10.98 -0.06 6.10 16 11 O -0.53 -8.01 15.18 -15.58 -0.24 -8.24 16 12 N -0.72 -7.00 5.55 -61.47 -0.34 -7.34 16 13 C 0.16 1.65 6.11 -5.19 -0.03 1.62 16 14 C -0.19 -1.81 9.24 -36.03 -0.33 -2.14 16 15 C -0.11 -1.23 9.38 -36.02 -0.34 -1.57 16 16 C 0.08 1.02 6.12 -4.97 -0.03 0.98 16 17 N -0.67 -10.92 6.12 -116.34 -0.71 -11.63 16 18 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 19 C 0.44 10.50 7.82 -10.99 -0.09 10.41 16 20 O -0.58 -16.05 15.78 5.55 0.09 -15.96 16 21 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 22 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 23 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 26 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 30 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 33 H 0.12 0.96 7.69 -51.93 -0.40 0.56 16 34 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.40 2.92 8.46 -40.82 -0.35 2.57 16 36 H 0.07 0.92 7.79 -51.93 -0.40 0.51 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.11 0.93 7.84 -52.49 -0.41 0.51 16 39 H 0.12 1.44 7.84 -52.48 -0.41 1.03 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.03 0.35 7.79 -51.93 -0.40 -0.05 16 42 H 0.35 5.97 8.42 -39.29 -0.33 5.64 16 43 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 46 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 402.05 15.07 6.06 6.06 Total: -1.00 -36.81 402.05 -8.23 -45.05 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -6.77 Total: 14.56 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -1.21 Total: 10.79 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.39 Total: -57.21 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -0.90 Total: -35.31 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.81 -8.23 -45.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268523389.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.790 kcal (2) G-P(sol) polarization free energy of solvation -36.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds