Wall clock time and date at job start Tue Mar 31 2020 22:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99825 * 2 1 4 4 O 1.20830 * 120.00242 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99663 * 179.97438 * 3 2 1 6 6 H 1.08998 * 115.54919 * 30.19147 * 5 3 2 7 7 C 1.52992 * 117.49560 * 244.51856 * 5 3 2 8 8 C 1.52991 * 60.03463 * 252.47704 * 7 5 3 9 9 H 1.08994 * 117.50430 * 252.52227 * 8 7 5 10 10 C 1.50705 * 117.49697 * 107.50467 * 8 7 5 11 11 O 1.21276 * 120.00302 * 7.72835 * 10 8 7 12 12 N 1.34783 * 119.99798 * 187.73375 * 10 8 7 13 13 C 1.46504 * 119.99733 * 179.97438 * 12 10 8 14 14 C 1.50697 * 109.46792 * 179.97438 * 13 12 10 15 15 C 1.31000 * 119.99761 * 125.00013 * 14 13 12 16 16 C 1.50706 * 120.00157 * 179.97438 * 15 14 13 17 17 N 1.46898 * 109.47023 * 125.00482 * 16 15 14 18 18 C 1.46900 * 110.99861 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.46988 * 179.97438 * 18 17 16 20 20 O 1.21293 * 120.00482 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99897 * 179.97438 * 19 18 17 22 22 C 1.37106 * 120.00166 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99212 * 0.02562 * 22 21 19 24 24 C 1.38950 * 120.00114 * 180.02562 * 22 21 19 25 25 N 1.31412 * 119.99965 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99808 * 180.02562 * 24 22 21 27 27 H 1.48491 * 109.47308 * 59.99854 * 26 24 22 28 28 H 1.48504 * 109.46853 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.46866 * 299.99425 * 26 24 22 30 30 H 1.09003 * 109.47237 * 59.99974 * 1 2 3 31 31 H 1.09003 * 109.47372 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47633 * 300.00332 * 1 2 3 33 33 H 1.09004 * 117.50720 * 359.97438 * 7 5 3 34 34 H 1.09005 * 117.49772 * 144.97473 * 7 5 3 35 35 H 0.96993 * 119.99962 * 0.02562 * 12 10 8 36 36 H 1.08998 * 109.47085 * 299.99988 * 13 12 10 37 37 H 1.08996 * 109.46701 * 60.00188 * 13 12 10 38 38 H 1.07994 * 120.00451 * 305.00521 * 14 13 12 39 39 H 1.08003 * 120.00012 * 0.02562 * 15 14 13 40 40 H 1.09003 * 109.47080 * 245.00297 * 16 15 14 41 41 H 1.09000 * 109.46752 * 5.00207 * 16 15 14 42 42 H 1.00905 * 110.99837 * 303.95169 * 17 16 15 43 43 H 1.08994 * 109.47344 * 299.99991 * 18 17 16 44 44 H 1.08998 * 109.46919 * 60.00036 * 18 17 16 45 45 H 0.96997 * 120.00249 * 0.02562 * 21 19 18 46 46 H 0.96994 * 119.99764 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0804 0.4505 -0.4936 7 6 4.2407 1.8951 1.2258 8 6 4.2021 2.6639 -0.0963 9 1 5.1342 2.7529 -0.6542 10 6 3.2755 3.8491 -0.1853 11 8 2.7026 4.2468 0.8069 12 7 3.0833 4.4670 -1.3676 13 6 2.1821 5.6188 -1.4542 14 6 2.1443 6.1213 -2.8744 15 6 0.9982 6.2356 -3.4984 16 6 0.9603 6.7387 -4.9185 17 7 0.2574 5.7648 -5.7644 18 6 0.2015 6.2226 -7.1591 19 6 -0.5244 5.1999 -7.9947 20 8 -0.9535 4.1894 -7.4790 21 7 -0.6979 5.4087 -9.3148 22 6 -1.3588 4.4786 -10.0750 23 1 -1.7407 3.5788 -9.6157 24 6 -1.5371 4.6935 -11.4361 25 7 -1.0728 5.7886 -11.9948 26 14 -2.4383 3.4265 -12.4716 27 1 -3.8184 3.2536 -11.9518 28 1 -2.4941 3.8889 -13.8817 29 1 -1.7178 2.1297 -12.4046 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 3.5959 2.2466 2.0314 34 1 5.1984 1.4785 1.5381 35 1 3.5412 4.1487 -2.1612 36 1 1.1798 5.3197 -1.1474 37 1 2.5416 6.4114 -0.7981 38 1 3.0620 6.3871 -3.3778 39 1 0.0803 5.9701 -2.9949 40 1 0.4361 7.6939 -4.9517 41 1 1.9785 6.8701 -5.2847 42 1 0.6866 4.8539 -5.7001 43 1 -0.3276 7.1742 -7.2083 44 1 1.2146 6.3500 -7.5406 45 1 -0.3551 6.2170 -9.7272 46 1 -1.1976 5.9388 -12.9448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268523389.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:52 Heat of formation + Delta-G solvation = -136.235213 kcal Electronic energy + Delta-G solvation = -27900.112004 eV Core-core repulsion = 23597.294616 eV Total energy + Delta-G solvation = -4302.817388 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.97723 -40.55125 -40.17496 -38.17675 -37.65668 -36.91080 -36.24903 -35.80151 -33.82102 -33.24079 -29.88688 -29.22481 -27.82221 -26.29422 -25.58731 -24.63988 -23.37891 -21.84359 -21.40737 -21.12704 -20.39725 -19.90310 -19.29062 -18.23763 -17.95421 -17.43599 -17.22946 -17.03878 -16.60196 -16.52520 -16.36502 -15.98572 -15.69671 -15.41913 -15.15119 -14.98945 -14.89028 -14.37227 -14.23971 -14.18133 -13.98717 -13.54288 -13.40703 -13.18753 -13.09276 -12.95723 -12.91717 -12.70775 -12.44353 -12.14533 -12.10266 -11.88921 -11.76966 -11.74088 -11.54432 -11.51521 -10.99843 -10.42346 -10.31670 -10.02975 -9.95263 -9.35787 -8.47422 -5.96422 0.89933 0.98905 1.39391 1.41436 1.46763 1.52452 1.77179 2.03796 2.28927 2.33710 2.77829 2.98298 3.19626 3.52030 3.52429 3.61440 3.66490 3.76367 3.90820 4.07056 4.21245 4.22193 4.24901 4.30370 4.36737 4.44414 4.51229 4.57171 4.61260 4.64880 4.72070 4.77041 4.78845 4.85071 5.00552 5.29846 5.39749 5.42703 5.59881 5.70101 5.87836 6.08960 6.37999 6.58766 6.59162 6.64112 7.11392 7.34018 7.54823 8.10354 8.69616 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012824 B = 0.001800 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.830132 B =15550.828734 C =17075.306721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.357 6.357 3 C 0.468 3.532 4 O -0.524 6.524 5 C -0.144 4.144 6 H 0.185 0.815 7 C -0.103 4.103 8 C -0.161 4.161 9 H 0.185 0.815 10 C 0.540 3.460 11 O -0.577 6.577 12 N -0.714 5.714 13 C 0.158 3.842 14 C -0.160 4.160 15 C -0.128 4.128 16 C 0.090 3.910 17 N -0.686 5.686 18 C 0.065 3.935 19 C 0.435 3.565 20 O -0.626 6.626 21 N -0.572 5.572 22 C -0.336 4.336 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.994 3.006 27 H -0.273 1.273 28 H -0.269 1.269 29 H -0.271 1.271 30 H 0.053 0.947 31 H 0.135 0.865 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.165 0.835 35 H 0.413 0.587 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.141 0.859 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.344 0.656 43 H 0.106 0.894 44 H 0.072 0.928 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.710 -5.345 22.826 28.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.273 6.273 3 C 0.312 3.688 4 O -0.413 6.413 5 C -0.163 4.163 6 H 0.202 0.798 7 C -0.140 4.140 8 C -0.181 4.181 9 H 0.202 0.798 10 C 0.328 3.672 11 O -0.456 6.456 12 N -0.366 5.366 13 C 0.035 3.965 14 C -0.179 4.179 15 C -0.148 4.148 16 C -0.038 4.038 17 N -0.318 5.318 18 C -0.067 4.067 19 C 0.223 3.777 20 O -0.512 6.512 21 N -0.209 5.209 22 C -0.465 4.465 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.817 3.183 27 H -0.199 1.199 28 H -0.194 1.194 29 H -0.196 1.196 30 H 0.071 0.929 31 H 0.153 0.847 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.183 0.817 35 H 0.250 0.750 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.158 0.842 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.074 0.926 42 H 0.163 0.837 43 H 0.124 0.876 44 H 0.090 0.910 45 H 0.231 0.769 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.132 -5.099 23.811 28.670 hybrid contribution -0.113 -0.162 -1.464 1.477 sum 15.019 -5.261 22.348 27.435 Atomic orbital electron populations 1.23483 0.75064 1.05658 1.01982 1.86449 1.24542 1.32559 1.83783 1.23448 0.92143 0.81280 0.71952 1.90793 1.67672 1.37063 1.45775 1.22038 0.86709 0.99071 1.08495 0.79825 1.23264 1.03629 0.97591 0.89538 1.22615 1.01473 0.88110 1.05917 0.79809 1.19968 0.80984 0.83525 0.82747 1.90653 1.50257 1.66962 1.37776 1.45725 1.47533 1.32392 1.10972 1.20126 0.93400 0.87918 0.95060 1.22851 0.98855 1.01305 0.94930 1.22825 0.98190 0.98363 0.95427 1.21091 0.97475 0.95676 0.89588 1.60022 1.58846 1.06060 1.06884 1.21548 0.99786 0.97180 0.88172 1.20918 0.84867 0.89142 0.82777 1.90493 1.55898 1.32167 1.72678 1.41924 1.50740 1.21299 1.06945 1.19627 1.33781 1.02168 0.90958 0.90419 1.26053 0.98192 0.99419 0.97630 1.69661 1.46310 1.26552 1.13440 0.84983 0.78426 0.77857 0.77035 1.19858 1.19391 1.19592 0.92854 0.84707 0.92416 0.89642 0.81745 0.75023 0.93949 0.90873 0.84158 0.88172 0.89288 0.92634 0.83746 0.87642 0.91045 0.76868 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.73 16 2 O -0.36 -7.00 10.57 -51.41 -0.54 -7.54 16 3 C 0.47 10.15 7.71 71.24 0.55 10.70 16 4 O -0.52 -15.88 13.14 28.71 0.38 -15.50 16 5 C -0.14 -1.68 6.30 -11.52 -0.07 -1.76 16 6 H 0.18 0.73 8.14 -2.39 -0.02 0.71 16 7 C -0.10 -1.02 9.74 30.59 0.30 -0.72 16 8 C -0.16 -1.87 6.19 -11.52 -0.07 -1.94 16 9 H 0.18 0.47 8.14 -2.39 -0.02 0.45 16 10 C 0.54 11.99 5.37 87.66 0.47 12.46 16 11 O -0.58 -18.47 15.18 17.20 0.26 -18.21 16 12 N -0.71 -13.43 5.55 -466.78 -2.59 -16.02 16 13 C 0.16 3.37 6.11 85.63 0.52 3.89 16 14 C -0.16 -2.82 9.24 25.65 0.24 -2.59 16 15 C -0.13 -2.80 9.38 25.65 0.24 -2.56 16 16 C 0.09 2.01 6.12 85.56 0.52 2.54 16 17 N -0.69 -21.86 6.12 -521.99 -3.19 -25.05 16 18 C 0.07 2.22 6.17 85.56 0.53 2.74 16 19 C 0.44 20.89 7.82 87.66 0.69 21.58 16 20 O -0.63 -35.31 15.78 -3.07 -0.05 -35.36 16 21 N -0.57 -29.44 5.29 -306.98 -1.62 -31.06 16 22 C -0.34 -19.18 9.68 84.04 0.81 -18.36 16 23 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 24 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 25 N -0.92 -49.42 13.05 21.66 0.28 -49.14 16 26 Si 0.99 42.91 29.55 68.60 2.03 44.94 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 28 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 29 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 30 H 0.05 1.04 8.13 -2.39 -0.02 1.02 16 31 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 33 H 0.08 1.43 7.69 -2.39 -0.02 1.41 16 34 H 0.16 0.19 8.14 -2.38 -0.02 0.17 16 35 H 0.41 5.27 8.46 -92.71 -0.78 4.49 16 36 H 0.04 1.16 7.79 -2.39 -0.02 1.15 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.14 1.79 7.84 -2.91 -0.02 1.77 16 39 H 0.10 2.56 7.84 -2.91 -0.02 2.53 16 40 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 1.02 7.79 -2.39 -0.02 1.00 16 42 H 0.34 11.60 8.42 -89.69 -0.76 10.84 16 43 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.40 19.26 7.90 -92.71 -0.73 18.53 16 46 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -84.66 402.05 0.10 -84.56 By element: Atomic # 1 Polarization: 42.14 SS G_CDS: -1.24 Total: 40.91 kcal Atomic # 6 Polarization: 21.09 SS G_CDS: 6.39 Total: 27.48 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -7.12 Total: -121.27 kcal Atomic # 8 Polarization: -76.66 SS G_CDS: 0.05 Total: -76.61 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -84.66 0.10 -84.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268523389.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.680 kcal (2) G-P(sol) polarization free energy of solvation -84.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds