Wall clock time and date at job start Tue Mar 31 2020 22:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99799 * 2 1 4 4 O 1.20827 * 119.99964 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99832 * 179.97438 * 3 2 1 6 6 H 1.08998 * 115.55220 * 325.67114 * 5 3 2 7 7 C 1.52994 * 117.51732 * 111.37572 * 5 3 2 8 8 C 1.52989 * 60.00524 * 107.47795 * 7 5 3 9 9 H 1.09001 * 117.52577 * 252.52079 * 8 7 5 10 10 C 1.50704 * 117.49941 * 107.48867 * 8 7 5 11 11 O 1.21287 * 119.99896 * 291.37611 * 10 8 7 12 12 N 1.34773 * 120.00366 * 111.38494 * 10 8 7 13 13 C 1.46496 * 120.00608 * 180.02562 * 12 10 8 14 14 C 1.52990 * 109.47414 * 174.34895 * 13 12 10 15 15 N 1.46897 * 115.56445 * 325.06834 * 14 13 12 16 16 C 1.46901 * 110.99965 * 279.79120 * 15 14 13 17 17 C 1.50701 * 109.47421 * 178.43862 * 16 15 14 18 18 O 1.21294 * 119.99615 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00556 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00379 * 179.97438 * 19 17 16 21 21 H 1.07993 * 119.99824 * 359.97438 * 20 19 17 22 22 C 1.38953 * 120.00013 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00108 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00050 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46916 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46899 * 119.99734 * 24 22 20 27 27 H 1.48491 * 109.47403 * 239.99959 * 24 22 20 28 28 C 1.53001 * 117.50075 * 179.37559 * 14 13 12 29 29 C 1.52991 * 60.00421 * 252.51121 * 28 14 13 30 30 H 1.08999 * 109.46892 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47460 * 300.00254 * 1 2 3 32 32 H 1.09000 * 109.46967 * 60.00167 * 1 2 3 33 33 H 1.09002 * 117.49907 * 359.97438 * 7 5 3 34 34 H 1.09004 * 117.50190 * 214.97428 * 7 5 3 35 35 H 0.97006 * 119.99894 * 359.97438 * 12 10 8 36 36 H 1.09005 * 109.46941 * 54.34716 * 13 12 10 37 37 H 1.09002 * 109.46529 * 294.35599 * 13 12 10 38 38 H 1.00905 * 111.00339 * 155.84127 * 15 14 13 39 39 H 1.08998 * 109.47121 * 298.43755 * 16 15 14 40 40 H 1.08999 * 109.47372 * 58.43565 * 16 15 14 41 41 H 0.97004 * 119.99822 * 359.97438 * 19 17 16 42 42 H 0.97001 * 120.00298 * 180.02562 * 23 22 20 43 43 H 1.08999 * 117.50074 * 145.02179 * 28 14 13 44 44 H 1.09006 * 117.49688 * 0.02562 * 28 14 13 45 45 H 1.08998 * 117.49983 * 107.48149 * 29 28 14 46 46 H 1.08995 * 117.50256 * 252.48608 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0781 0.4887 0.5555 7 6 4.2468 1.8055 -1.2628 8 6 4.2007 2.6672 0.0005 9 1 3.5296 3.5261 0.0002 10 6 5.4854 2.8466 0.7678 11 8 5.9773 1.9062 1.3550 12 7 6.0875 4.0518 0.8016 13 6 7.3366 4.2261 1.5470 14 6 7.8794 5.6367 1.3100 15 7 7.6504 6.1868 -0.0327 16 6 8.6350 5.6653 -0.9901 17 6 8.3456 6.2205 -2.3609 18 8 7.4108 6.9760 -2.5243 19 7 9.1248 5.8769 -3.4055 20 6 8.8612 6.3817 -4.6526 21 1 8.0289 7.0543 -4.7981 22 6 9.6650 6.0278 -5.7294 23 7 10.6781 5.2097 -5.5523 24 14 9.3054 6.7149 -7.4288 25 1 8.1198 7.6065 -7.3615 26 1 10.4790 7.4881 -7.9086 27 1 9.0320 5.5970 -8.3671 28 6 9.1794 6.0218 2.0189 29 6 7.8484 6.6127 2.4880 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.6060 2.0973 -2.0949 34 1 5.2063 1.3683 -1.5392 35 1 5.6942 4.8039 0.3318 36 1 8.0682 3.4933 1.2064 37 1 7.1476 4.0833 2.6110 38 1 7.6608 7.1956 -0.0168 39 1 9.6364 5.9646 -0.6809 40 1 8.5735 4.5774 -1.0184 41 1 9.8722 5.2725 -3.2749 42 1 11.2394 4.9630 -6.3040 43 1 9.8648 6.6832 1.4890 44 1 9.6482 5.2699 2.6538 45 1 7.4413 6.2497 3.4316 46 1 7.6583 7.6629 2.2669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269383747.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:14 Heat of formation + Delta-G solvation = -100.228504 kcal Electronic energy + Delta-G solvation = -28926.982547 eV Core-core repulsion = 24625.726527 eV Total energy + Delta-G solvation = -4301.256020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.98279 -39.93215 -38.95170 -37.84606 -37.11467 -35.89555 -34.18929 -34.03093 -32.60818 -31.22648 -28.66742 -27.74531 -26.60930 -24.88923 -24.14951 -23.66678 -22.56391 -20.88790 -20.19560 -19.56408 -19.25089 -18.36040 -17.92473 -17.18305 -16.90138 -16.59776 -16.41714 -15.90540 -15.51847 -15.30329 -14.94692 -14.51147 -14.33653 -14.19146 -14.01601 -13.93079 -13.51414 -13.42259 -13.14405 -12.81639 -12.58567 -12.46904 -12.25755 -12.22138 -11.77167 -11.60674 -11.50823 -11.14607 -11.10936 -11.06919 -10.94270 -10.83287 -10.72071 -10.37478 -10.28286 -10.19009 -9.90824 -9.56052 -8.99859 -8.53256 -8.22080 -8.00857 -6.45638 -3.86686 1.77214 2.22337 2.47684 3.07986 3.13508 3.24655 3.31450 3.53472 3.63634 3.85069 3.96781 4.20721 4.28599 4.45601 4.46739 4.54241 4.68400 4.72941 4.79767 4.85192 4.88489 4.99220 5.08015 5.20849 5.20989 5.40157 5.46645 5.49657 5.58849 5.62413 5.66671 5.71253 5.71349 5.79933 5.93267 5.93372 6.06217 6.19581 6.43277 7.05077 7.46162 7.46410 7.51651 7.59500 8.01742 8.21864 8.56066 9.13614 9.49530 10.00156 10.71972 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008195 B = 0.002790 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3416.053580 B =10032.243783 C =12627.281218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.494 3.506 4 O -0.505 6.505 5 C -0.141 4.141 6 H 0.150 0.850 7 C -0.111 4.111 8 C -0.153 4.153 9 H 0.140 0.860 10 C 0.543 3.457 11 O -0.550 6.550 12 N -0.702 5.702 13 C 0.172 3.828 14 C 0.035 3.965 15 N -0.629 5.629 16 C 0.053 3.947 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.562 5.562 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.023 3.977 23 N -0.900 5.900 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C -0.203 4.203 29 C -0.169 4.169 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.418 0.582 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.355 0.645 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.402 -7.521 14.652 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.338 3.662 4 O -0.392 6.392 5 C -0.161 4.161 6 H 0.167 0.833 7 C -0.148 4.148 8 C -0.174 4.174 9 H 0.158 0.842 10 C 0.329 3.671 11 O -0.428 6.428 12 N -0.354 5.354 13 C 0.047 3.953 14 C -0.058 4.058 15 N -0.261 5.261 16 C -0.079 4.079 17 C 0.225 3.775 18 O -0.468 6.468 19 N -0.198 5.198 20 C -0.429 4.429 21 H 0.122 0.878 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.243 4.243 29 C -0.207 4.207 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.256 0.744 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.176 0.824 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.256 -7.887 14.621 20.067 hybrid contribution 0.856 0.880 -0.713 1.420 sum -10.401 -7.007 13.908 18.727 Atomic orbital electron populations 1.23308 0.76028 1.03830 1.02700 1.86494 1.23524 1.32962 1.83954 1.22560 0.90315 0.81351 0.72021 1.90683 1.66852 1.36385 1.45310 1.21665 0.88161 0.99804 1.06442 0.83280 1.23121 1.02835 0.98764 0.90110 1.22279 0.97763 0.95411 1.01942 0.84234 1.19388 0.84572 0.82785 0.80349 1.90694 1.66003 1.40365 1.45783 1.45684 1.24902 1.12008 1.52772 1.20701 0.85710 0.93095 0.95802 1.21899 1.00189 0.95221 0.88529 1.59746 1.50324 1.13770 1.02255 1.21662 0.93444 1.00737 0.92030 1.19762 0.85785 0.86363 0.85584 1.90529 1.31762 1.39661 1.84883 1.41863 1.27982 1.42697 1.07274 1.19740 1.13647 1.25920 0.83561 0.87848 1.25272 0.95638 0.96822 1.00193 1.69619 1.17367 1.34423 1.32746 0.85806 0.78477 0.78670 0.81440 1.19197 1.20768 1.20698 1.23542 0.91628 1.04367 1.04810 1.23324 1.00512 0.99018 0.97806 0.87927 0.91796 0.91727 0.86695 0.86177 0.74427 0.90882 0.91098 0.82380 0.93501 0.89589 0.77466 0.91870 0.88344 0.88264 0.88063 0.88284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.63 10.57 -39.26 -0.41 -4.05 16 3 C 0.49 5.77 7.74 36.01 0.28 6.05 16 4 O -0.50 -7.01 16.01 -18.75 -0.30 -7.31 16 5 C -0.14 -1.54 5.81 -91.77 -0.53 -2.07 16 6 H 0.15 1.60 7.67 -51.93 -0.40 1.20 16 7 C -0.11 -1.15 9.94 -26.74 -0.27 -1.41 16 8 C -0.15 -1.77 5.70 -91.77 -0.52 -2.29 16 9 H 0.14 1.57 7.67 -51.93 -0.40 1.17 16 10 C 0.54 7.24 7.61 -10.98 -0.08 7.16 16 11 O -0.55 -8.74 16.25 5.55 0.09 -8.65 16 12 N -0.70 -8.72 5.39 -60.30 -0.33 -9.04 16 13 C 0.17 2.00 5.78 -4.05 -0.02 1.97 16 14 C 0.03 0.39 2.12 -131.60 -0.28 0.11 16 15 N -0.63 -8.94 5.23 -101.22 -0.53 -9.46 16 16 C 0.05 0.88 5.99 -4.97 -0.03 0.85 16 17 C 0.44 9.85 7.82 -10.99 -0.09 9.77 16 18 O -0.58 -15.01 15.81 5.54 0.09 -14.92 16 19 N -0.56 -13.79 5.29 -10.97 -0.06 -13.85 16 20 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.13 13.05 55.50 0.72 -23.40 16 24 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 C -0.20 -1.98 9.62 -26.74 -0.26 -2.24 16 29 C -0.17 -1.56 9.87 -26.73 -0.26 -1.82 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 32 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 33 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.42 5.25 7.76 -40.82 -0.32 4.93 16 36 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16 37 H 0.07 0.76 7.90 -51.93 -0.41 0.35 16 38 H 0.36 5.24 8.26 -39.29 -0.32 4.92 16 39 H 0.05 0.71 7.53 -51.93 -0.39 0.32 16 40 H 0.09 1.38 8.06 -51.93 -0.42 0.96 16 41 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 42 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.10 1.01 7.86 -51.93 -0.41 0.60 16 44 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.10 0.81 8.05 -51.93 -0.42 0.39 16 46 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 LS Contribution 401.39 15.07 6.05 6.05 Total: -1.00 -32.99 401.39 -7.64 -40.62 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -6.69 Total: 18.74 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -1.24 Total: 9.60 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.19 Total: -55.76 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -0.54 Total: -34.94 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.99 -7.64 -40.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269383747.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.604 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds