Wall clock time and date at job start Tue Mar 31 2020 22:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99799 * 2 1 4 4 O 1.20827 * 119.99964 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99832 * 179.97438 * 3 2 1 6 6 H 1.08998 * 115.55220 * 325.67114 * 5 3 2 7 7 C 1.52994 * 117.51732 * 111.37572 * 5 3 2 8 8 C 1.52989 * 60.00524 * 107.47795 * 7 5 3 9 9 H 1.09001 * 117.52577 * 252.52079 * 8 7 5 10 10 C 1.50704 * 117.49941 * 107.48867 * 8 7 5 11 11 O 1.21287 * 119.99896 * 291.37611 * 10 8 7 12 12 N 1.34773 * 120.00366 * 111.38494 * 10 8 7 13 13 C 1.46496 * 120.00608 * 180.02562 * 12 10 8 14 14 C 1.52990 * 109.47414 * 174.34895 * 13 12 10 15 15 N 1.46897 * 115.56445 * 325.06834 * 14 13 12 16 16 C 1.46901 * 110.99965 * 279.79120 * 15 14 13 17 17 C 1.50701 * 109.47421 * 178.43862 * 16 15 14 18 18 O 1.21294 * 119.99615 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00556 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00379 * 179.97438 * 19 17 16 21 21 H 1.07993 * 119.99824 * 359.97438 * 20 19 17 22 22 C 1.38953 * 120.00013 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00108 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00050 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46916 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46899 * 119.99734 * 24 22 20 27 27 H 1.48491 * 109.47403 * 239.99959 * 24 22 20 28 28 C 1.53001 * 117.50075 * 179.37559 * 14 13 12 29 29 C 1.52991 * 60.00421 * 252.51121 * 28 14 13 30 30 H 1.08999 * 109.46892 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47460 * 300.00254 * 1 2 3 32 32 H 1.09000 * 109.46967 * 60.00167 * 1 2 3 33 33 H 1.09002 * 117.49907 * 359.97438 * 7 5 3 34 34 H 1.09004 * 117.50190 * 214.97428 * 7 5 3 35 35 H 0.97006 * 119.99894 * 359.97438 * 12 10 8 36 36 H 1.09005 * 109.46941 * 54.34716 * 13 12 10 37 37 H 1.09002 * 109.46529 * 294.35599 * 13 12 10 38 38 H 1.00905 * 111.00339 * 155.84127 * 15 14 13 39 39 H 1.08998 * 109.47121 * 298.43755 * 16 15 14 40 40 H 1.08999 * 109.47372 * 58.43565 * 16 15 14 41 41 H 0.97004 * 119.99822 * 359.97438 * 19 17 16 42 42 H 0.97001 * 120.00298 * 180.02562 * 23 22 20 43 43 H 1.08999 * 117.50074 * 145.02179 * 28 14 13 44 44 H 1.09006 * 117.49688 * 0.02562 * 28 14 13 45 45 H 1.08998 * 117.49983 * 107.48149 * 29 28 14 46 46 H 1.08995 * 117.50256 * 252.48608 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0781 0.4887 0.5555 7 6 4.2468 1.8055 -1.2628 8 6 4.2007 2.6672 0.0005 9 1 3.5296 3.5261 0.0002 10 6 5.4854 2.8466 0.7678 11 8 5.9773 1.9062 1.3550 12 7 6.0875 4.0518 0.8016 13 6 7.3366 4.2261 1.5470 14 6 7.8794 5.6367 1.3100 15 7 7.6504 6.1868 -0.0327 16 6 8.6350 5.6653 -0.9901 17 6 8.3456 6.2205 -2.3609 18 8 7.4108 6.9760 -2.5243 19 7 9.1248 5.8769 -3.4055 20 6 8.8612 6.3817 -4.6526 21 1 8.0289 7.0543 -4.7981 22 6 9.6650 6.0278 -5.7294 23 7 10.6781 5.2097 -5.5523 24 14 9.3054 6.7149 -7.4288 25 1 8.1198 7.6065 -7.3615 26 1 10.4790 7.4881 -7.9086 27 1 9.0320 5.5970 -8.3671 28 6 9.1794 6.0218 2.0189 29 6 7.8484 6.6127 2.4880 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.6060 2.0973 -2.0949 34 1 5.2063 1.3683 -1.5392 35 1 5.6942 4.8039 0.3318 36 1 8.0682 3.4933 1.2064 37 1 7.1476 4.0833 2.6110 38 1 7.6608 7.1956 -0.0168 39 1 9.6364 5.9646 -0.6809 40 1 8.5735 4.5774 -1.0184 41 1 9.8722 5.2725 -3.2749 42 1 11.2394 4.9630 -6.3040 43 1 9.8648 6.6832 1.4890 44 1 9.6482 5.2699 2.6538 45 1 7.4413 6.2497 3.4316 46 1 7.6583 7.6629 2.2669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269383747.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:13 Heat of formation + Delta-G solvation = -124.168034 kcal Electronic energy + Delta-G solvation = -28928.020643 eV Core-core repulsion = 24625.726527 eV Total energy + Delta-G solvation = -4302.294116 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.89303 -40.93965 -40.27251 -39.27779 -38.00300 -36.83405 -35.99182 -35.19007 -33.88142 -33.17722 -29.42438 -28.63222 -28.18418 -25.90486 -25.70637 -24.56917 -23.36500 -21.76918 -21.23871 -21.00491 -20.48733 -19.88325 -19.26467 -18.07141 -18.05052 -17.54180 -17.43114 -17.04045 -16.93473 -16.42248 -16.32258 -15.95802 -15.80590 -15.43483 -15.08144 -14.91985 -14.76847 -14.35376 -14.17533 -14.01393 -13.70133 -13.55753 -13.50360 -13.47251 -12.95018 -12.93644 -12.83603 -12.39253 -12.36946 -12.11115 -11.97585 -11.87473 -11.85718 -11.76029 -11.64722 -11.49860 -11.09815 -10.97108 -10.30769 -10.00817 -9.99904 -9.38961 -8.45957 -5.94357 0.86247 1.34904 1.37022 1.42828 1.53386 1.56518 2.05807 2.14675 2.29629 2.64097 2.71773 2.94208 3.21703 3.39386 3.42648 3.59090 3.62646 3.73525 3.84811 3.91981 3.97813 4.08310 4.27981 4.31352 4.32380 4.44085 4.53621 4.56749 4.65218 4.68859 4.69495 4.76861 4.77817 4.80032 4.86033 5.00630 5.21183 5.24303 5.41921 5.43159 5.85680 6.06928 6.32621 6.55924 6.59791 6.60119 7.13585 7.18745 7.57135 8.11577 8.71620 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008195 B = 0.002790 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3416.053580 B =10032.243783 C =12627.281218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.498 3.502 4 O -0.531 6.531 5 C -0.137 4.137 6 H 0.151 0.849 7 C -0.103 4.103 8 C -0.161 4.161 9 H 0.142 0.858 10 C 0.543 3.457 11 O -0.578 6.578 12 N -0.699 5.699 13 C 0.172 3.828 14 C 0.021 3.979 15 N -0.635 5.635 16 C 0.072 3.928 17 C 0.440 3.560 18 O -0.618 6.618 19 N -0.574 5.574 20 C -0.329 4.329 21 H 0.080 0.920 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.272 1.272 28 C -0.195 4.195 29 C -0.153 4.153 30 H 0.134 0.866 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.418 0.582 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.352 0.648 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.395 0.605 42 H 0.277 0.723 43 H 0.094 0.906 44 H 0.114 0.886 45 H 0.119 0.881 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.380 -7.864 15.284 20.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.342 3.658 4 O -0.421 6.421 5 C -0.156 4.156 6 H 0.169 0.831 7 C -0.140 4.140 8 C -0.182 4.182 9 H 0.159 0.841 10 C 0.329 3.671 11 O -0.459 6.459 12 N -0.349 5.349 13 C 0.047 3.953 14 C -0.072 4.072 15 N -0.267 5.267 16 C -0.060 4.060 17 C 0.228 3.772 18 O -0.505 6.505 19 N -0.211 5.211 20 C -0.459 4.459 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.198 1.198 27 H -0.197 1.197 28 C -0.235 4.235 29 C -0.190 4.190 30 H 0.152 0.848 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.255 0.745 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.173 0.827 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.229 0.771 42 H 0.086 0.914 43 H 0.113 0.887 44 H 0.132 0.868 45 H 0.137 0.863 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.223 -8.243 15.276 20.670 hybrid contribution 0.794 0.976 -0.828 1.506 sum -10.429 -7.268 14.448 19.244 Atomic orbital electron populations 1.23624 0.74241 1.05983 1.02746 1.86486 1.25309 1.32083 1.83426 1.22638 0.90473 0.81383 0.71287 1.90669 1.67436 1.37260 1.46756 1.21637 0.87922 0.99330 1.06723 0.83112 1.23200 1.03033 0.97833 0.89955 1.22248 0.97210 0.95960 1.02742 0.84062 1.19618 0.84869 0.82578 0.80006 1.90674 1.66935 1.41189 1.47132 1.45729 1.25053 1.11687 1.52450 1.20768 0.85064 0.93106 0.96319 1.21838 1.02293 0.95496 0.87558 1.59665 1.49836 1.13546 1.03654 1.21427 0.94938 1.00677 0.88957 1.20773 0.84308 0.84950 0.87189 1.90501 1.33041 1.41004 1.85905 1.41938 1.28661 1.43226 1.07247 1.19680 1.13902 1.26914 0.85386 0.90188 1.26020 0.95214 0.96827 1.03247 1.69679 1.17762 1.34859 1.33917 0.84896 0.78262 0.78161 0.77202 1.19679 1.19753 1.19725 1.23584 0.91291 1.04375 1.04231 1.23418 0.99663 0.98683 0.97239 0.84774 0.91768 0.91722 0.85794 0.85859 0.74487 0.91878 0.89859 0.82725 0.91636 0.88843 0.77138 0.91369 0.88724 0.86782 0.86322 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -7.02 10.57 -51.42 -0.54 -7.57 16 3 C 0.50 11.41 7.74 71.24 0.55 11.96 16 4 O -0.53 -14.69 16.01 21.96 0.35 -14.33 16 5 C -0.14 -2.93 5.81 -11.54 -0.07 -2.99 16 6 H 0.15 3.19 7.67 -2.39 -0.02 3.17 16 7 C -0.10 -2.08 9.94 30.59 0.30 -1.77 16 8 C -0.16 -3.68 5.70 -11.54 -0.07 -3.74 16 9 H 0.14 3.18 7.67 -2.39 -0.02 3.16 16 10 C 0.54 14.28 7.61 87.66 0.67 14.95 16 11 O -0.58 -18.22 16.25 -3.05 -0.05 -18.27 16 12 N -0.70 -16.88 5.39 -463.07 -2.50 -19.37 16 13 C 0.17 3.75 5.78 86.38 0.50 4.25 16 14 C 0.02 0.42 2.12 3.53 0.01 0.43 16 15 N -0.64 -17.40 5.23 -474.16 -2.48 -19.88 16 16 C 0.07 2.31 5.99 85.56 0.51 2.82 16 17 C 0.44 19.89 7.82 87.66 0.69 20.57 16 18 O -0.62 -32.32 15.81 -3.07 -0.05 -32.37 16 19 N -0.57 -28.58 5.29 -306.99 -1.62 -30.20 16 20 C -0.33 -18.27 9.68 84.04 0.81 -17.45 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -49.14 13.05 21.66 0.28 -48.86 16 24 Si 0.99 42.32 29.55 68.60 2.03 44.35 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 28 C -0.20 -3.29 9.62 30.59 0.29 -3.00 16 29 C -0.15 -2.41 9.87 30.59 0.30 -2.10 16 30 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 32 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 33 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.42 10.27 7.76 -92.70 -0.72 9.55 16 36 H 0.06 1.51 8.13 -2.38 -0.02 1.49 16 37 H 0.08 1.63 7.90 -2.39 -0.02 1.61 16 38 H 0.35 10.09 8.26 -89.69 -0.74 9.35 16 39 H 0.07 1.88 7.53 -2.39 -0.02 1.86 16 40 H 0.09 2.90 8.06 -2.39 -0.02 2.88 16 41 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 42 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 43 H 0.09 1.72 7.86 -2.39 -0.02 1.70 16 44 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 45 H 0.12 1.50 8.05 -2.39 -0.02 1.48 16 46 H 0.10 1.59 8.08 -2.39 -0.02 1.57 16 Total: -1.00 -71.11 401.39 0.44 -70.67 By element: Atomic # 1 Polarization: 51.75 SS G_CDS: -1.15 Total: 50.60 kcal Atomic # 6 Polarization: 19.07 SS G_CDS: 6.17 Total: 25.23 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -6.32 Total: -118.31 kcal Atomic # 8 Polarization: -72.25 SS G_CDS: -0.29 Total: -72.54 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -71.11 0.44 -70.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269383747.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.502 kcal (2) G-P(sol) polarization free energy of solvation -71.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds