Wall clock time and date at job start Tue Mar 31 2020 22:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99722 * 2 1 4 4 H 1.48492 * 109.46903 * 269.99234 * 3 2 1 5 5 H 1.48494 * 109.47212 * 29.99833 * 3 2 1 6 6 H 1.48500 * 109.46630 * 149.99638 * 3 2 1 7 7 C 1.38812 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99788 * 0.02562 * 7 2 1 9 9 N 1.36931 * 119.99892 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00036 * 173.68858 * 9 7 2 11 11 C 1.53007 * 110.01493 * 62.76834 * 10 9 7 12 12 N 1.46500 * 109.46888 * 55.23595 * 11 10 9 13 13 C 1.34774 * 119.99571 * 175.30762 * 12 11 10 14 14 O 1.21558 * 120.00660 * 0.02562 * 13 12 11 15 15 C 1.47774 * 119.99861 * 179.97438 * 13 12 11 16 16 C 1.40636 * 119.80184 * 0.02562 * 15 13 12 17 17 C 1.35701 * 120.91975 * 180.25047 * 16 15 13 18 18 C 1.40759 * 120.11208 * 359.49413 * 17 16 15 19 19 N 1.33644 * 120.83112 * 180.27078 * 18 17 16 20 20 C 1.31120 * 121.39642 * 180.25238 * 19 18 17 21 21 C 1.39317 * 121.76562 * 0.02562 * 20 19 18 22 22 C 1.36577 * 119.90690 * 0.02562 * 21 20 19 23 23 C 1.40891 * 118.15976 * 359.97438 * 22 21 20 24 24 C 1.38549 * 119.80594 * 180.02562 * 15 13 12 25 25 C 1.54262 * 110.07513 * 184.18432 * 10 9 7 26 26 C 1.54896 * 104.19417 * 95.70160 * 25 10 9 27 27 C 1.54894 * 102.74983 * 37.93986 * 26 25 10 28 28 C 1.53872 * 110.03293 * 301.38163 * 10 9 7 29 29 H 0.97001 * 120.00801 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00181 * 353.69265 * 9 7 2 31 31 H 1.08995 * 109.46921 * 295.23294 * 11 10 9 32 32 H 1.08998 * 109.47112 * 175.23528 * 11 10 9 33 33 H 0.97001 * 120.00247 * 355.30665 * 12 11 10 34 34 H 1.07996 * 119.53919 * 359.97179 * 16 15 13 35 35 H 1.08000 * 119.94344 * 179.74593 * 17 16 15 36 36 H 1.08002 * 119.11672 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.04685 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.92066 * 179.97438 * 22 21 20 39 39 H 1.07996 * 120.29952 * 0.02562 * 24 15 13 40 40 H 1.09001 * 110.48763 * 214.37360 * 25 10 9 41 41 H 1.08991 * 110.49073 * 337.02265 * 25 10 9 42 42 H 1.09003 * 110.75134 * 279.62833 * 26 25 10 43 43 H 1.08996 * 110.75706 * 156.26013 * 26 25 10 44 44 H 1.09000 * 110.48725 * 203.38172 * 27 26 25 45 45 H 1.08998 * 110.47995 * 80.73636 * 27 26 25 46 46 H 1.08995 * 110.03414 * 359.94680 * 28 10 9 47 47 H 1.09007 * 110.03535 * 121.37873 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4631 0.1411 11 6 3.8047 -3.3816 -1.0434 12 7 4.1038 -2.6812 -2.2948 13 6 3.9990 -3.3298 -3.4716 14 8 3.6558 -4.4957 -3.4947 15 6 4.3001 -2.6232 -4.7341 16 6 4.6963 -1.2742 -4.7027 17 6 4.9735 -0.6020 -5.8485 18 6 4.8771 -1.2555 -7.0915 19 7 5.1519 -0.6089 -8.2283 20 6 5.0611 -1.2053 -9.3925 21 6 4.6743 -2.5390 -9.5051 22 6 4.3777 -3.2591 -8.3832 23 6 4.4766 -2.6147 -7.1341 24 6 4.1905 -3.2937 -5.9415 25 6 5.6282 -2.1890 0.2177 26 6 5.9323 -2.1580 1.7362 27 6 5.0167 -3.2772 2.2912 28 6 3.7232 -3.1549 1.4593 29 1 -0.4851 0.8400 -0.0004 30 1 3.8646 -0.3672 -0.0912 31 1 2.7506 -3.6581 -1.0247 32 1 4.4174 -4.2805 -0.9746 33 1 4.3773 -1.7507 -2.2765 34 1 4.7768 -0.7648 -3.7538 35 1 5.2724 0.4349 -5.8063 36 1 5.2923 -0.6477 -10.2881 37 1 4.6083 -3.0025 -10.4783 38 1 4.0758 -4.2937 -8.4515 39 1 3.8858 -4.3295 -5.9639 40 1 6.1858 -2.9907 -0.2666 41 1 5.8658 -1.2281 -0.2386 42 1 5.6643 -1.1919 2.1641 43 1 6.9810 -2.3876 1.9249 44 1 4.8079 -3.1104 3.3479 45 1 5.4755 -4.2545 2.1416 46 1 2.9902 -2.5521 1.9954 47 1 3.3155 -4.1451 1.2553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270786310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:41 Heat of formation + Delta-G solvation = 27.294555 kcal Electronic energy + Delta-G solvation = -29020.191275 eV Core-core repulsion = 25167.607085 eV Total energy + Delta-G solvation = -3852.584191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.03422 -39.61723 -38.38161 -36.70954 -34.31937 -33.69956 -33.38581 -31.26562 -30.70300 -30.20026 -28.45289 -28.24789 -25.40975 -24.03327 -23.83534 -22.91308 -22.18648 -20.91781 -20.28051 -18.91930 -18.17810 -17.75058 -17.61799 -17.07690 -16.02913 -15.81445 -15.17580 -14.89837 -14.69261 -14.60172 -14.38926 -14.23094 -14.15486 -13.79901 -13.54465 -13.30812 -13.16912 -12.98113 -12.62492 -12.24494 -12.18748 -11.98153 -11.66726 -11.57569 -11.25466 -10.93239 -10.80841 -10.80153 -10.68586 -10.58171 -10.40339 -10.14776 -10.02165 -9.74594 -9.69214 -9.60143 -9.01333 -8.97976 -8.61356 -8.38061 -7.37170 -5.82371 -3.20419 0.08151 0.50252 1.75350 2.38134 3.30165 3.32557 3.38899 3.41044 3.51534 3.99562 4.05119 4.38469 4.47608 4.52179 4.63454 4.76254 4.86427 4.94990 4.98507 4.99299 5.04055 5.08595 5.26056 5.36137 5.49030 5.56357 5.63527 5.71327 5.76328 5.84425 5.85417 5.86827 5.97157 6.03835 6.09141 6.11333 6.16866 6.22651 6.29088 6.32291 6.44423 6.52029 6.55936 6.58213 6.72821 6.85957 7.04378 7.66875 7.88312 7.95277 8.36192 8.51650 9.12966 9.84760 10.03294 11.35419 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011852 B = 0.003255 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.834537 B = 8599.963377 C = 9725.922882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.010 3.990 3 Si 0.877 3.123 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.242 4.242 8 H 0.091 0.909 9 N -0.738 5.738 10 C 0.194 3.806 11 C 0.119 3.881 12 N -0.695 5.695 13 C 0.552 3.448 14 O -0.549 6.549 15 C -0.122 4.122 16 C -0.070 4.070 17 C -0.099 4.099 18 C 0.141 3.859 19 N -0.477 5.477 20 C 0.135 3.865 21 C -0.184 4.184 22 C -0.046 4.046 23 C -0.113 4.113 24 C -0.031 4.031 25 C -0.127 4.127 26 C -0.120 4.120 27 C -0.121 4.121 28 C -0.128 4.128 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.400 0.600 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.159 0.841 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.257 -5.087 -12.437 19.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.186 4.186 3 Si 0.707 3.293 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.371 4.371 8 H 0.109 0.891 9 N -0.381 5.381 10 C 0.102 3.898 11 C -0.007 4.007 12 N -0.344 5.344 13 C 0.338 3.662 14 O -0.429 6.429 15 C -0.125 4.125 16 C -0.091 4.091 17 C -0.117 4.117 18 C 0.020 3.980 19 N -0.185 5.185 20 C -0.037 4.037 21 C -0.203 4.203 22 C -0.072 4.072 23 C -0.115 4.115 24 C -0.051 4.051 25 C -0.165 4.165 26 C -0.158 4.158 27 C -0.159 4.159 28 C -0.168 4.168 29 H 0.070 0.930 30 H 0.193 0.807 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.236 0.764 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.176 0.824 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.105 0.895 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.993 -5.060 -12.207 19.246 hybrid contribution 0.182 0.942 -0.120 0.967 sum 14.175 -4.117 -12.327 19.231 Atomic orbital electron populations 1.69691 1.05147 1.25811 1.56956 1.24676 0.95108 0.97018 1.01814 0.86674 0.79464 0.85414 0.77734 1.21141 1.21844 1.20121 1.18935 0.80349 0.94607 1.43238 0.89077 1.42915 1.04081 1.02292 1.88810 1.20421 0.90000 0.87249 0.92114 1.21995 1.01302 0.94441 0.82965 1.45689 1.67466 1.15547 1.05699 1.18095 0.78091 0.86378 0.83595 1.90739 1.48216 1.16525 1.87381 1.20088 1.03621 0.94605 0.94184 1.21050 0.95801 0.93130 0.99099 1.20681 1.00751 1.00630 0.89661 1.18996 0.96111 0.90081 0.92852 1.68063 1.14771 1.37678 0.98016 1.23015 0.92826 0.92242 0.95635 1.21879 1.02567 0.96099 0.99802 1.21565 0.94227 1.00176 0.91206 1.18807 1.03110 0.95037 0.94522 1.21425 0.93845 1.00095 0.89752 1.22636 0.95812 1.01291 0.96723 1.22429 0.98444 0.99398 0.95511 1.22326 0.96368 0.97952 0.99247 1.22608 0.97485 1.00401 0.96316 0.93041 0.80651 0.91142 0.92202 0.76379 0.84680 0.84142 0.82356 0.84395 0.84064 0.83700 0.91309 0.91867 0.91479 0.92387 0.92258 0.92392 0.89517 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.16 13.97 55.49 0.78 -27.38 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 20.77 27.68 -169.99 -4.70 16.06 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.07 6.61 56.52 0.37 -5.69 16 7 C -0.24 -6.20 8.96 -15.06 -0.13 -6.33 16 8 H 0.09 2.59 7.55 -52.49 -0.40 2.19 16 9 N -0.74 -15.24 4.32 -46.20 -0.20 -15.44 16 10 C 0.19 3.29 0.68 -130.70 -0.09 3.20 16 11 C 0.12 2.08 4.06 -4.04 -0.02 2.06 16 12 N -0.69 -11.56 5.18 -61.27 -0.32 -11.88 16 13 C 0.55 9.52 7.77 -12.36 -0.10 9.43 16 14 O -0.55 -10.96 16.30 5.31 0.09 -10.87 16 15 C -0.12 -1.80 5.87 -104.98 -0.62 -2.41 16 16 C -0.07 -0.93 9.44 -39.58 -0.37 -1.30 16 17 C -0.10 -1.26 9.95 -39.54 -0.39 -1.66 16 18 C 0.14 1.87 6.61 -84.78 -0.56 1.31 16 19 N -0.48 -5.97 10.33 -10.92 -0.11 -6.08 16 20 C 0.14 1.25 11.15 -17.45 -0.19 1.05 16 21 C -0.18 -1.46 10.03 -39.78 -0.40 -1.86 16 22 C -0.05 -0.43 9.89 -39.18 -0.39 -0.82 16 23 C -0.11 -1.39 5.74 -106.82 -0.61 -2.01 16 24 C -0.03 -0.42 9.35 -38.74 -0.36 -0.78 16 25 C -0.13 -1.76 5.73 -25.07 -0.14 -1.90 16 26 C -0.12 -1.58 6.91 -24.73 -0.17 -1.75 16 27 C -0.12 -1.64 6.83 -25.07 -0.17 -1.81 16 28 C -0.13 -2.14 5.92 -25.61 -0.15 -2.29 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.36 7.32 5.38 -40.82 -0.22 7.10 16 31 H 0.07 1.45 7.52 -51.93 -0.39 1.06 16 32 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 33 H 0.40 6.19 5.98 -40.82 -0.24 5.94 16 34 H 0.14 1.61 6.35 -52.49 -0.33 1.27 16 35 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 36 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.15 1.82 7.62 -52.49 -0.40 1.42 16 40 H 0.07 0.88 7.79 -51.93 -0.40 0.47 16 41 H 0.06 0.85 7.71 -51.93 -0.40 0.45 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 1.70 7.32 -51.93 -0.38 1.32 16 47 H 0.06 0.90 7.67 -51.92 -0.40 0.50 16 LS Contribution 381.00 15.07 5.74 5.74 Total: -1.00 -32.76 381.00 -10.23 -42.99 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -6.53 Total: 14.55 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -4.97 Total: -7.69 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: 0.15 Total: -60.78 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.70 Total: 16.06 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.76 -10.23 -42.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270786310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.284 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds