Wall clock time and date at job start Tue Mar 31 2020 22:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99834 * 2 1 4 4 H 1.48502 * 109.46846 * 90.00429 * 3 2 1 5 5 H 1.48505 * 109.47019 * 210.00186 * 3 2 1 6 6 H 1.48498 * 109.47318 * 330.00255 * 3 2 1 7 7 C 1.38812 * 120.00104 * 180.28226 * 2 1 3 8 8 H 1.08007 * 119.99775 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00016 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46839 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46739 * 180.02562 * 11 10 9 13 13 H 1.09000 * 110.88382 * 305.69120 * 12 11 10 14 14 C 1.55156 * 111.00228 * 181.81865 * 12 11 10 15 15 C 1.54328 * 102.94256 * 206.41871 * 14 12 11 16 16 N 1.47019 * 107.26582 * 22.19258 * 15 14 12 17 17 C 1.34783 * 125.64226 * 181.09733 * 16 15 14 18 18 O 1.21608 * 119.99514 * 174.82524 * 17 16 15 19 19 C 1.47448 * 120.00230 * 354.82268 * 17 16 15 20 20 C 1.38865 * 120.46294 * 313.93873 * 19 17 16 21 21 C 1.38895 * 120.67215 * 179.97438 * 20 19 17 22 22 C 1.36366 * 121.28120 * 359.97438 * 21 20 19 23 23 C 1.40402 * 119.98399 * 0.02562 * 22 21 20 24 24 C 1.40464 * 121.95857 * 180.02562 * 23 22 21 25 25 N 1.31283 * 119.88093 * 179.12091 * 24 23 22 26 26 C 1.32550 * 122.73035 * 0.87076 * 25 24 23 27 27 C 1.36328 * 121.82203 * 359.40491 * 26 25 24 28 28 C 1.40296 * 118.70066 * 0.02562 * 27 26 25 29 29 C 1.47468 * 108.72675 * 1.02624 * 16 15 14 30 30 H 0.96996 * 120.00252 * 359.72080 * 1 2 3 31 31 H 0.97003 * 120.00457 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46904 * 300.00015 * 10 9 7 33 33 H 1.08993 * 109.46752 * 59.99977 * 10 9 7 34 34 H 1.09001 * 109.47271 * 299.99652 * 11 10 9 35 35 H 1.08993 * 109.47580 * 60.00346 * 11 10 9 36 36 H 1.09001 * 110.72228 * 324.78734 * 14 12 11 37 37 H 1.09001 * 110.72134 * 88.05593 * 14 12 11 38 38 H 1.09000 * 109.88247 * 141.60950 * 15 14 12 39 39 H 1.09002 * 109.87723 * 262.62099 * 15 14 12 40 40 H 1.07999 * 119.65979 * 359.97438 * 20 19 17 41 41 H 1.08003 * 119.36032 * 180.02562 * 21 20 19 42 42 H 1.08003 * 120.01090 * 179.97438 * 22 21 20 43 43 H 1.08003 * 120.05573 * 359.96124 * 24 23 22 44 44 H 1.08006 * 119.09039 * 179.41738 * 26 25 24 45 45 H 1.08001 * 120.64865 * 180.02562 * 27 26 25 46 46 H 1.09003 * 110.40256 * 217.08304 * 29 16 15 47 47 H 1.08999 * 110.34898 * 94.74434 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5477 1.4402 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0059 8 1 3.0903 -1.2021 -0.0063 9 7 1.3256 -2.3880 -0.0112 10 6 2.0582 -3.6567 -0.0169 11 6 1.0639 -4.8196 -0.0228 12 6 1.8290 -6.1446 -0.0281 13 1 2.5384 -6.1804 -0.8548 14 6 0.8533 -7.3499 -0.0801 15 6 1.6637 -8.4798 0.5895 16 7 2.6918 -7.8430 1.4256 17 6 3.6185 -8.4899 2.1600 18 8 4.4814 -7.8605 2.7414 19 6 3.5859 -9.9608 2.2585 20 6 2.3914 -10.6234 2.5081 21 6 2.3557 -12.0088 2.6012 22 6 3.4852 -12.7579 2.4509 23 6 4.7151 -12.1299 2.1973 24 6 5.9035 -12.8608 2.0350 25 7 7.0283 -12.2327 1.7820 26 6 7.1061 -10.9130 1.6856 27 6 6.0102 -10.1156 1.8327 28 6 4.7697 -10.7167 2.0937 29 6 2.5426 -6.3792 1.3266 30 1 -0.4850 0.8400 0.0041 31 1 0.3556 -2.3881 -0.0112 32 1 2.6848 -3.7104 -0.9072 33 1 2.6848 -3.7184 0.8728 34 1 0.4369 -4.7661 0.8673 35 1 0.4376 -4.7578 -0.9127 36 1 -0.0530 -7.1372 0.4869 37 1 0.6127 -7.6071 -1.1116 38 1 1.0069 -9.0897 1.2097 39 1 2.1347 -9.1001 -0.1731 40 1 1.4809 -10.0557 2.6311 41 1 1.4149 -12.5023 2.7956 42 1 3.4339 -13.8340 2.5277 43 1 5.8896 -13.9385 2.1048 44 1 8.0643 -10.4568 1.4847 45 1 6.0953 -9.0421 1.7500 46 1 3.5200 -5.8966 1.3291 47 1 1.9313 -6.0041 2.1474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280297215.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:10 Heat of formation + Delta-G solvation = 32.309757 kcal Electronic energy + Delta-G solvation = -28068.316551 eV Core-core repulsion = 24215.949836 eV Total energy + Delta-G solvation = -3852.366715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.46392 -40.06590 -38.02686 -37.47489 -35.18868 -33.45493 -33.00835 -31.68523 -31.08202 -30.16062 -29.58827 -27.24022 -25.29844 -24.44225 -23.93182 -23.34307 -22.73592 -21.31501 -20.25170 -19.82339 -18.59775 -17.84023 -17.17886 -17.06411 -16.75743 -16.14243 -15.89757 -15.14720 -14.93351 -14.64970 -14.57646 -14.44952 -14.11526 -13.96211 -13.61648 -13.42820 -13.22425 -13.09867 -12.92244 -12.90046 -12.48663 -12.32302 -12.23501 -11.87172 -11.70972 -11.36130 -11.09867 -10.83677 -10.71701 -10.62100 -10.50525 -10.36964 -10.17911 -9.99802 -9.82514 -9.67602 -9.55779 -8.86906 -8.85951 -8.49513 -6.91441 -5.75886 -3.04412 -0.24681 0.44569 1.30084 2.30244 2.59261 2.81827 3.44828 3.49883 3.51528 3.66199 3.93703 4.05625 4.18370 4.25561 4.38256 4.39346 4.44839 4.55408 4.62594 4.64528 4.73297 4.91865 5.02172 5.10536 5.17594 5.27593 5.34228 5.39492 5.47431 5.50838 5.55123 5.56671 5.62306 5.73086 5.76304 5.78848 5.85348 5.89465 6.02544 6.06370 6.18504 6.21513 6.31150 6.34773 6.35427 6.82924 6.86795 7.23433 7.58802 7.71393 7.85065 8.43348 9.54364 10.12334 10.46799 11.47113 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020842 B = 0.002008 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.092240 B =13942.082771 C =14868.344297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.151 3.849 11 C -0.114 4.114 12 C -0.094 4.094 13 H 0.086 0.914 14 C -0.129 4.129 15 C 0.096 3.904 16 N -0.611 5.611 17 C 0.574 3.426 18 O -0.527 6.527 19 C -0.116 4.116 20 C -0.062 4.062 21 C -0.126 4.126 22 C -0.065 4.065 23 C -0.117 4.117 24 C 0.144 3.856 25 N -0.486 5.486 26 C 0.079 3.921 27 C -0.146 4.146 28 C 0.010 3.990 29 C 0.109 3.891 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.166 0.834 44 H 0.156 0.844 45 H 0.148 0.852 46 H 0.084 0.916 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.485 -31.738 2.760 32.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.153 4.153 12 C -0.114 4.114 13 H 0.104 0.896 14 C -0.166 4.166 15 C -0.026 4.026 16 N -0.345 5.345 17 C 0.362 3.638 18 O -0.404 6.404 19 C -0.119 4.119 20 C -0.081 4.081 21 C -0.144 4.144 22 C -0.085 4.085 23 C -0.119 4.119 24 C -0.028 4.028 25 N -0.194 5.194 26 C -0.063 4.063 27 C -0.165 4.165 28 C 0.004 3.996 29 C -0.012 4.012 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.183 0.817 44 H 0.174 0.826 45 H 0.166 0.834 46 H 0.103 0.897 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.004 -31.641 2.964 32.172 hybrid contribution -0.751 1.474 0.156 1.662 sum 4.253 -30.168 3.120 30.625 Atomic orbital electron populations 1.69656 1.05104 1.25627 1.57959 1.24749 0.95559 0.97734 1.03110 0.86179 0.78652 0.83776 0.77547 1.21700 1.20749 1.21767 1.19243 0.91062 0.84203 1.42451 0.91191 1.42363 1.05860 1.00088 1.89522 1.20682 0.93556 0.85582 0.97853 1.21685 0.98572 0.92400 1.02599 1.22350 0.97233 0.94961 0.96830 0.89602 1.22743 0.98368 0.94009 1.01520 1.22222 0.89999 0.96479 0.93932 1.48472 1.31721 1.08315 1.45965 1.17704 0.80651 0.86476 0.78956 1.90834 1.35542 1.68135 1.45907 1.19835 0.93725 0.92920 1.05382 1.21548 0.96803 0.94804 0.94985 1.20852 0.99197 0.93371 1.00988 1.21163 0.91151 1.00404 0.95778 1.18991 0.96105 0.93107 1.03735 1.23235 0.86514 1.00060 0.92956 1.67442 1.28804 1.11304 1.11848 1.22290 0.98944 0.88700 0.96399 1.22160 0.92298 1.02544 0.99523 1.17863 0.93150 0.92258 0.96326 1.22485 1.02046 0.78789 0.97913 0.93545 0.78330 0.96443 0.96288 0.91546 0.91207 0.90040 0.89738 0.91222 0.91318 0.84626 0.84705 0.84406 0.81737 0.82626 0.83436 0.89740 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.73 -18.74 5.60 -59.91 -0.34 -19.07 16 10 C 0.15 2.98 6.14 -4.04 -0.02 2.96 16 11 C -0.11 -1.68 4.84 -26.73 -0.13 -1.81 16 12 C -0.09 -1.09 3.04 -88.47 -0.27 -1.35 16 13 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 14 C -0.13 -1.09 6.42 -24.89 -0.16 -1.25 16 15 C 0.10 0.79 5.94 -3.06 -0.02 0.77 16 16 N -0.61 -7.01 3.33 -171.74 -0.57 -7.59 16 17 C 0.57 7.52 6.90 -12.51 -0.09 7.43 16 18 O -0.53 -8.79 15.49 5.27 0.08 -8.71 16 19 C -0.12 -1.23 5.38 -104.70 -0.56 -1.80 16 20 C -0.06 -0.47 8.42 -39.11 -0.33 -0.80 16 21 C -0.13 -0.71 9.92 -40.01 -0.40 -1.10 16 22 C -0.06 -0.37 9.79 -39.44 -0.39 -0.76 16 23 C -0.12 -1.00 5.74 -106.88 -0.61 -1.62 16 24 C 0.14 1.16 11.05 -16.95 -0.19 0.98 16 25 N -0.49 -5.02 10.30 -13.11 -0.14 -5.15 16 26 C 0.08 0.81 11.07 -17.93 -0.20 0.62 16 27 C -0.15 -1.66 9.24 -39.50 -0.36 -2.02 16 28 C 0.01 0.11 5.76 -106.55 -0.61 -0.51 16 29 C 0.11 1.39 5.74 -2.51 -0.01 1.38 16 30 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.38 10.17 7.67 -40.82 -0.31 9.86 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.39 7.59 -51.93 -0.39 -0.01 16 34 H 0.07 0.99 8.03 -51.93 -0.42 0.57 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.08 0.66 8.04 -51.93 -0.42 0.24 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.44 5.84 -51.93 -0.30 0.13 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.14 0.83 6.28 -52.49 -0.33 0.50 16 41 H 0.14 0.38 8.06 -52.48 -0.42 -0.04 16 42 H 0.14 0.35 8.06 -52.48 -0.42 -0.08 16 43 H 0.17 0.73 8.06 -52.48 -0.42 0.30 16 44 H 0.16 1.25 8.06 -52.48 -0.42 0.83 16 45 H 0.15 1.83 6.29 -52.49 -0.33 1.50 16 46 H 0.08 1.22 7.95 -51.93 -0.41 0.81 16 47 H 0.08 0.99 7.96 -51.93 -0.41 0.58 16 LS Contribution 384.26 15.07 5.79 5.79 Total: -1.00 -35.33 384.26 -10.75 -46.08 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.68 Total: 5.09 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -4.60 Total: -6.39 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.32 Total: -59.55 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.71 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.33 -10.75 -46.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280297215.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.390 kcal (2) G-P(sol) polarization free energy of solvation -35.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds