Wall clock time and date at job start Tue Mar 31 2020 22:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99834 * 2 1 4 4 H 1.48502 * 109.46846 * 90.00429 * 3 2 1 5 5 H 1.48505 * 109.47019 * 210.00186 * 3 2 1 6 6 H 1.48498 * 109.47318 * 330.00255 * 3 2 1 7 7 C 1.38812 * 120.00104 * 180.28226 * 2 1 3 8 8 H 1.08007 * 119.99775 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00016 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46839 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46739 * 180.02562 * 11 10 9 13 13 H 1.09000 * 110.88382 * 305.69120 * 12 11 10 14 14 C 1.55156 * 111.00228 * 181.81865 * 12 11 10 15 15 C 1.54328 * 102.94256 * 206.41871 * 14 12 11 16 16 N 1.47019 * 107.26582 * 22.19258 * 15 14 12 17 17 C 1.34783 * 125.64226 * 181.09733 * 16 15 14 18 18 O 1.21608 * 119.99514 * 174.82524 * 17 16 15 19 19 C 1.47448 * 120.00230 * 354.82268 * 17 16 15 20 20 C 1.38865 * 120.46294 * 313.93873 * 19 17 16 21 21 C 1.38895 * 120.67215 * 179.97438 * 20 19 17 22 22 C 1.36366 * 121.28120 * 359.97438 * 21 20 19 23 23 C 1.40402 * 119.98399 * 0.02562 * 22 21 20 24 24 C 1.40464 * 121.95857 * 180.02562 * 23 22 21 25 25 N 1.31283 * 119.88093 * 179.12091 * 24 23 22 26 26 C 1.32550 * 122.73035 * 0.87076 * 25 24 23 27 27 C 1.36328 * 121.82203 * 359.40491 * 26 25 24 28 28 C 1.40296 * 118.70066 * 0.02562 * 27 26 25 29 29 C 1.47468 * 108.72675 * 1.02624 * 16 15 14 30 30 H 0.96996 * 120.00252 * 359.72080 * 1 2 3 31 31 H 0.97003 * 120.00457 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46904 * 300.00015 * 10 9 7 33 33 H 1.08993 * 109.46752 * 59.99977 * 10 9 7 34 34 H 1.09001 * 109.47271 * 299.99652 * 11 10 9 35 35 H 1.08993 * 109.47580 * 60.00346 * 11 10 9 36 36 H 1.09001 * 110.72228 * 324.78734 * 14 12 11 37 37 H 1.09001 * 110.72134 * 88.05593 * 14 12 11 38 38 H 1.09000 * 109.88247 * 141.60950 * 15 14 12 39 39 H 1.09002 * 109.87723 * 262.62099 * 15 14 12 40 40 H 1.07999 * 119.65979 * 359.97438 * 20 19 17 41 41 H 1.08003 * 119.36032 * 180.02562 * 21 20 19 42 42 H 1.08003 * 120.01090 * 179.97438 * 22 21 20 43 43 H 1.08003 * 120.05573 * 359.96124 * 24 23 22 44 44 H 1.08006 * 119.09039 * 179.41738 * 26 25 24 45 45 H 1.08001 * 120.64865 * 180.02562 * 27 26 25 46 46 H 1.09003 * 110.40256 * 217.08304 * 29 16 15 47 47 H 1.08999 * 110.34898 * 94.74434 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5477 1.4402 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0059 8 1 3.0903 -1.2021 -0.0063 9 7 1.3256 -2.3880 -0.0112 10 6 2.0582 -3.6567 -0.0169 11 6 1.0639 -4.8196 -0.0228 12 6 1.8290 -6.1446 -0.0281 13 1 2.5384 -6.1804 -0.8548 14 6 0.8533 -7.3499 -0.0801 15 6 1.6637 -8.4798 0.5895 16 7 2.6918 -7.8430 1.4256 17 6 3.6185 -8.4899 2.1600 18 8 4.4814 -7.8605 2.7414 19 6 3.5859 -9.9608 2.2585 20 6 2.3914 -10.6234 2.5081 21 6 2.3557 -12.0088 2.6012 22 6 3.4852 -12.7579 2.4509 23 6 4.7151 -12.1299 2.1973 24 6 5.9035 -12.8608 2.0350 25 7 7.0283 -12.2327 1.7820 26 6 7.1061 -10.9130 1.6856 27 6 6.0102 -10.1156 1.8327 28 6 4.7697 -10.7167 2.0937 29 6 2.5426 -6.3792 1.3266 30 1 -0.4850 0.8400 0.0041 31 1 0.3556 -2.3881 -0.0112 32 1 2.6848 -3.7104 -0.9072 33 1 2.6848 -3.7184 0.8728 34 1 0.4369 -4.7661 0.8673 35 1 0.4376 -4.7578 -0.9127 36 1 -0.0530 -7.1372 0.4869 37 1 0.6127 -7.6071 -1.1116 38 1 1.0069 -9.0897 1.2097 39 1 2.1347 -9.1001 -0.1731 40 1 1.4809 -10.0557 2.6311 41 1 1.4149 -12.5023 2.7956 42 1 3.4339 -13.8340 2.5277 43 1 5.8896 -13.9385 2.1048 44 1 8.0643 -10.4568 1.4847 45 1 6.0953 -9.0421 1.7500 46 1 3.5200 -5.8966 1.3291 47 1 1.9313 -6.0041 2.1474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280297215.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:09 Heat of formation + Delta-G solvation = 9.682305 kcal Electronic energy + Delta-G solvation = -28069.297751 eV Core-core repulsion = 24215.949836 eV Total energy + Delta-G solvation = -3853.347915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.16661 -40.92667 -38.99257 -38.16040 -36.88247 -34.66180 -33.98775 -32.85529 -32.16100 -30.87779 -30.74868 -28.55907 -26.38107 -25.46788 -24.71489 -24.55452 -23.60662 -22.69837 -21.31109 -20.65311 -19.28093 -19.11426 -18.59772 -17.84274 -17.55822 -17.06557 -16.73591 -16.66003 -15.97649 -15.71332 -15.42877 -15.30787 -15.23502 -15.06889 -14.92055 -14.72246 -14.40322 -14.08754 -13.86406 -13.64288 -13.39238 -13.10900 -13.07873 -13.02181 -12.90000 -12.78367 -12.54838 -12.29117 -12.19899 -12.02903 -11.73480 -11.57293 -11.44950 -11.30942 -11.08534 -10.95483 -10.55182 -10.16972 -9.79464 -9.14362 -9.03069 -7.98588 -5.27440 -0.86034 -0.17626 0.59774 1.44755 1.46620 1.51004 1.55147 1.79262 2.07258 2.53276 3.00688 3.20703 3.34637 3.43679 3.52577 3.57471 3.65319 3.72366 3.77910 3.83741 3.90198 4.12201 4.13685 4.25672 4.29462 4.34091 4.45503 4.47643 4.54340 4.59521 4.69927 4.71360 4.73983 4.80635 4.87223 4.88228 4.92381 5.04800 5.09594 5.12627 5.23731 5.27116 5.32574 5.36335 5.43700 5.46622 5.57853 5.75535 6.24661 6.34409 6.90146 6.91975 7.30642 8.06572 8.30559 9.24751 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020842 B = 0.002008 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.092240 B =13942.082771 C =14868.344297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.272 1.272 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.070 0.930 9 N -0.747 5.747 10 C 0.147 3.853 11 C -0.098 4.098 12 C -0.086 4.086 13 H 0.084 0.916 14 C -0.117 4.117 15 C 0.094 3.906 16 N -0.610 5.610 17 C 0.568 3.432 18 O -0.581 6.581 19 C -0.152 4.152 20 C -0.044 4.044 21 C -0.125 4.125 22 C -0.045 4.045 23 C -0.132 4.132 24 C 0.156 3.844 25 N -0.514 5.514 26 C 0.076 3.924 27 C -0.177 4.177 28 C -0.008 4.008 29 C 0.108 3.892 30 H 0.253 0.747 31 H 0.376 0.624 32 H 0.016 0.984 33 H 0.012 0.988 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.152 0.848 41 H 0.176 0.824 42 H 0.183 0.817 43 H 0.208 0.792 44 H 0.164 0.836 45 H 0.121 0.879 46 H 0.054 0.946 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.727 -35.550 2.571 35.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.197 1.197 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.088 0.912 9 N -0.390 5.390 10 C 0.021 3.979 11 C -0.137 4.137 12 C -0.105 4.105 13 H 0.103 0.897 14 C -0.155 4.155 15 C -0.027 4.027 16 N -0.342 5.342 17 C 0.359 3.641 18 O -0.463 6.463 19 C -0.155 4.155 20 C -0.063 4.063 21 C -0.143 4.143 22 C -0.064 4.064 23 C -0.134 4.134 24 C -0.015 4.015 25 N -0.223 5.223 26 C -0.066 4.066 27 C -0.197 4.197 28 C -0.014 4.014 29 C -0.015 4.015 30 H 0.061 0.939 31 H 0.208 0.792 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.170 0.830 41 H 0.193 0.807 42 H 0.200 0.800 43 H 0.224 0.776 44 H 0.181 0.819 45 H 0.139 0.861 46 H 0.072 0.928 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.246 -35.491 2.750 35.745 hybrid contribution -0.227 2.528 0.245 2.550 sum 3.019 -32.963 2.995 33.236 Atomic orbital electron populations 1.69798 1.06452 1.26186 1.59298 1.25579 0.96520 1.01095 1.03562 0.85143 0.77699 0.79453 0.77486 1.21392 1.19653 1.21703 1.19615 0.91383 0.85627 1.41539 0.91168 1.42578 1.05726 1.01247 1.89425 1.20863 0.94488 0.85398 0.97135 1.21514 0.97472 0.91809 1.02863 1.22200 0.97738 0.94807 0.95804 0.89726 1.22752 0.97634 0.91906 1.03209 1.22469 0.89469 0.96563 0.94177 1.48546 1.32136 1.07706 1.45833 1.18257 0.79911 0.87794 0.78151 1.90788 1.37693 1.69522 1.48257 1.19667 0.95233 0.91137 1.09490 1.21871 0.95930 0.96162 0.92366 1.21306 1.00916 0.92212 0.99830 1.21693 0.89539 1.02571 0.92603 1.19288 0.97818 0.91939 1.04349 1.23983 0.85629 1.01793 0.90091 1.67516 1.30153 1.10854 1.13728 1.22414 0.98994 0.89163 0.95997 1.22014 0.93797 1.01442 1.02442 1.18098 0.92770 0.93848 0.96638 1.22348 1.00460 0.80039 0.98609 0.93851 0.79212 0.96618 0.97041 0.91536 0.90556 0.89004 0.87486 0.88352 0.90282 0.83018 0.80675 0.80007 0.77586 0.81900 0.86126 0.92776 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.76 13.06 21.65 0.28 -59.48 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 3 Si 0.97 47.22 29.55 68.60 2.03 49.25 16 4 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 7 C -0.25 -14.48 9.99 84.03 0.84 -13.64 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.75 -39.00 5.60 -343.45 -1.92 -40.92 16 10 C 0.15 6.00 6.14 86.38 0.53 6.53 16 11 C -0.10 -2.88 4.84 30.60 0.15 -2.73 16 12 C -0.09 -1.94 3.04 -9.40 -0.03 -1.97 16 13 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 14 C -0.12 -1.68 6.42 31.78 0.20 -1.47 16 15 C 0.09 1.33 5.94 86.73 0.52 1.84 16 16 N -0.61 -14.23 3.33 -815.52 -2.71 -16.94 16 17 C 0.57 15.84 6.90 86.67 0.60 16.44 16 18 O -0.58 -21.60 15.49 -4.05 -0.06 -21.67 16 19 C -0.15 -3.23 5.38 -19.92 -0.11 -3.33 16 20 C -0.04 -0.53 8.42 22.58 0.19 -0.34 16 21 C -0.13 -0.76 9.92 21.99 0.22 -0.54 16 22 C -0.04 -0.29 9.79 22.36 0.22 -0.07 16 23 C -0.13 -1.95 5.74 -21.33 -0.12 -2.07 16 24 C 0.16 2.15 11.05 85.32 0.94 3.10 16 25 N -0.51 -10.41 10.30 -195.39 -2.01 -12.42 16 26 C 0.08 1.69 11.07 84.14 0.93 2.62 16 27 C -0.18 -4.49 9.24 22.32 0.21 -4.28 16 28 C -0.01 -0.17 5.76 -21.11 -0.12 -0.29 16 29 C 0.11 2.90 5.74 86.84 0.50 3.39 16 30 H 0.25 15.06 8.31 -92.71 -0.77 14.28 16 31 H 0.38 20.40 7.67 -92.71 -0.71 19.69 16 32 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.01 0.49 7.59 -2.39 -0.02 0.47 16 34 H 0.07 1.96 8.03 -2.39 -0.02 1.94 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.09 1.18 8.04 -2.39 -0.02 1.16 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.10 0.85 5.84 -2.39 -0.01 0.84 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.15 1.27 6.28 -2.91 -0.02 1.25 16 41 H 0.18 -0.25 8.06 -2.91 -0.02 -0.27 16 42 H 0.18 -0.39 8.06 -2.91 -0.02 -0.42 16 43 H 0.21 0.88 8.06 -2.91 -0.02 0.85 16 44 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 45 H 0.12 3.58 6.29 -2.91 -0.02 3.57 16 46 H 0.05 1.75 7.95 -2.39 -0.02 1.73 16 47 H 0.07 1.91 7.96 -2.39 -0.02 1.89 16 Total: -1.00 -82.36 384.26 2.01 -80.35 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.28 Total: 22.62 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 6.13 Total: -0.79 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -6.37 Total: -129.76 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.06 Total: -21.67 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -82.36 2.01 -80.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280297215.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.034 kcal (2) G-P(sol) polarization free energy of solvation -82.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds