Wall clock time and date at job start Tue Mar 31 2020 23:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 120.00257 * 2 1 4 4 H 1.48497 * 109.46955 * 84.77529 * 3 2 1 5 5 H 1.48498 * 109.46819 * 204.77572 * 3 2 1 6 6 H 1.48492 * 109.46703 * 324.77691 * 3 2 1 7 7 C 1.38811 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00249 * 22.16878 * 7 2 1 9 9 N 1.36937 * 120.00358 * 202.16596 * 7 2 1 10 10 C 1.47241 * 121.33724 * 28.06643 * 9 7 2 11 11 C 1.53272 * 107.62899 * 115.72154 * 10 9 7 12 12 C 1.50603 * 110.81680 * 47.65441 * 11 10 9 13 13 C 1.38985 * 117.60414 * 160.27571 * 12 11 10 14 14 C 1.37901 * 120.57994 * 179.39559 * 13 12 11 15 15 C 1.38265 * 119.82832 * 0.02562 * 14 13 12 16 16 C 1.37962 * 119.71675 * 0.19850 * 15 14 13 17 17 C 1.37670 * 122.87095 * 340.04083 * 12 11 10 18 18 C 1.46683 * 121.34218 * 208.35117 * 9 7 2 19 19 H 1.08996 * 109.43327 * 344.29590 * 18 9 7 20 20 C 1.52996 * 109.43796 * 104.17407 * 18 9 7 21 21 N 1.46502 * 109.46717 * 304.99826 * 20 18 9 22 22 C 1.34783 * 119.99947 * 180.02562 * 21 20 18 23 23 O 1.21279 * 119.99781 * 359.97438 * 22 21 20 24 24 C 1.50699 * 120.00237 * 179.97438 * 22 21 20 25 25 C 1.50699 * 109.47363 * 179.97438 * 24 22 21 26 26 C 1.34848 * 125.89134 * 274.69077 * 25 24 22 27 27 C 1.40887 * 107.41597 * 179.88401 * 26 25 24 28 28 C 1.34854 * 107.41859 * 0.38150 * 27 26 25 29 29 N 1.36341 * 125.88753 * 94.99955 * 25 24 22 30 30 H 0.97000 * 125.63476 * 359.95954 * 29 25 24 31 31 H 0.97006 * 119.99862 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.77749 * 235.30579 * 10 9 7 33 33 H 1.09002 * 109.77455 * 356.11190 * 10 9 7 34 34 H 1.09005 * 109.30847 * 287.25439 * 11 10 9 35 35 H 1.09002 * 109.08470 * 167.91660 * 11 10 9 36 36 H 1.07999 * 119.70542 * 359.41614 * 13 12 11 37 37 H 1.07999 * 120.08905 * 180.02562 * 14 13 12 38 38 H 1.07994 * 120.14708 * 180.21492 * 15 14 13 39 39 H 1.07998 * 119.75120 * 179.97438 * 16 15 14 40 40 H 1.08999 * 109.47546 * 64.99448 * 20 18 9 41 41 H 1.09002 * 109.47466 * 185.00254 * 20 18 9 42 42 H 0.96992 * 120.00415 * 359.97438 * 21 20 18 43 43 H 1.09000 * 109.47260 * 300.00541 * 24 22 21 44 44 H 1.09002 * 109.46603 * 59.99782 * 24 22 21 45 45 H 1.08006 * 126.29049 * 0.02834 * 26 25 24 46 46 H 1.08002 * 126.29243 * 180.12835 * 27 26 25 47 47 H 1.07996 * 125.89232 * 179.73228 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3873 2.1101 1.3942 5 1 3.5986 1.4107 -0.5867 6 1 1.5072 2.6182 -0.8075 7 6 2.0101 -1.2022 0.0005 8 1 1.5300 -2.1031 -0.3520 9 7 3.3036 -1.2459 0.4480 10 6 3.7982 -0.2924 1.4551 11 6 4.1659 -1.0918 2.7100 12 6 5.0007 -2.2936 2.3536 13 6 5.7563 -2.8756 3.3645 14 6 6.5332 -3.9859 3.1091 15 6 6.5629 -4.5266 1.8369 16 6 5.8175 -3.9482 0.8304 17 6 5.0369 -2.8287 1.0857 18 6 4.2539 -2.2405 -0.0613 19 1 3.7091 -3.0338 -0.5730 20 6 5.2161 -1.5693 -1.0433 21 7 4.4497 -0.8998 -2.0972 22 6 5.0917 -0.2376 -3.0801 23 8 6.3037 -0.1958 -3.0918 24 6 4.3035 0.4506 -4.1646 25 6 5.2512 1.1119 -5.1319 26 6 5.7916 2.3397 -4.9946 27 6 6.6163 2.5649 -6.1145 28 6 6.5418 1.4696 -6.8976 29 7 5.7053 0.5743 -6.2996 30 1 5.4721 -0.3007 -6.6473 31 1 -0.4850 0.8401 0.0004 32 1 4.6788 0.2240 1.0730 33 1 3.0186 0.4319 1.6914 34 1 3.2537 -1.4234 3.2063 35 1 4.7303 -0.4515 3.3879 36 1 5.7345 -2.4547 4.3589 37 1 7.1169 -4.4320 3.9007 38 1 7.1668 -5.3981 1.6319 39 1 5.8406 -4.3698 -0.1636 40 1 5.8229 -0.8352 -0.5132 41 1 5.8649 -2.3233 -1.4891 42 1 3.4805 -0.9336 -2.0881 43 1 3.6966 -0.2836 -4.6944 44 1 3.6546 1.2048 -3.7191 45 1 5.6249 3.0236 -4.1755 46 1 7.1979 3.4534 -6.3117 47 1 7.0556 1.3265 -7.8366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281776100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:12 Heat of formation + Delta-G solvation = 61.436438 kcal Electronic energy + Delta-G solvation = -29614.556536 eV Core-core repulsion = 25763.452849 eV Total energy + Delta-G solvation = -3851.103688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.01755 -39.84544 -38.82891 -36.57617 -34.17950 -32.60487 -32.33678 -31.55448 -30.78589 -30.50347 -29.00447 -27.42593 -26.07199 -24.01907 -23.26287 -22.10710 -21.54833 -20.58254 -20.27315 -19.81685 -18.99190 -17.44444 -17.03223 -16.62327 -16.01860 -15.76462 -15.34658 -15.14831 -14.78350 -14.46436 -14.32605 -14.00713 -13.59207 -13.41442 -13.25346 -13.09947 -12.98693 -12.84278 -12.70491 -12.38943 -12.34122 -12.12646 -12.00558 -11.89229 -11.53895 -11.32090 -11.23701 -11.16946 -10.74238 -10.59662 -10.21622 -9.90638 -9.59842 -9.50370 -8.79629 -8.69898 -8.52334 -8.45819 -8.21586 -7.88897 -7.21677 -6.14173 -3.51516 1.64384 1.67793 2.34564 3.04251 3.14092 3.20354 3.39431 3.40708 3.43303 3.82177 4.06116 4.36546 4.69628 4.88257 5.07149 5.09103 5.17873 5.19389 5.22824 5.26933 5.29175 5.38153 5.57725 5.60644 5.66073 5.70999 5.74334 5.83397 5.86622 5.93003 6.02122 6.07408 6.10327 6.29072 6.35248 6.37969 6.40708 6.46649 6.51620 6.71546 6.74489 6.78220 6.96341 7.07030 7.12783 7.25928 7.30834 7.68896 7.74202 8.08619 8.15101 8.70255 8.72024 9.51302 9.91983 11.00296 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010462 B = 0.004034 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.794586 B = 6939.017270 C = 8764.193406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.035 3.965 3 Si 0.867 3.133 4 H -0.288 1.288 5 H -0.259 1.259 6 H -0.301 1.301 7 C -0.270 4.270 8 H 0.087 0.913 9 N -0.594 5.594 10 C 0.126 3.874 11 C -0.101 4.101 12 C -0.049 4.049 13 C -0.129 4.129 14 C -0.126 4.126 15 C -0.132 4.132 16 C -0.115 4.115 17 C -0.075 4.075 18 C 0.199 3.801 19 H 0.086 0.914 20 C 0.113 3.887 21 N -0.707 5.707 22 C 0.508 3.492 23 O -0.547 6.547 24 C -0.077 4.077 25 C 0.043 3.957 26 C -0.184 4.184 27 C -0.200 4.200 28 C -0.019 4.019 29 N -0.553 5.553 30 H 0.410 0.590 31 H 0.265 0.735 32 H 0.035 0.965 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.415 0.585 43 H 0.098 0.902 44 H 0.114 0.886 45 H 0.131 0.869 46 H 0.132 0.868 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.222 -3.288 -4.763 11.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.166 4.166 3 Si 0.696 3.304 4 H -0.216 1.216 5 H -0.183 1.183 6 H -0.229 1.229 7 C -0.397 4.397 8 H 0.105 0.895 9 N -0.316 5.316 10 C 0.000 4.000 11 C -0.139 4.139 12 C -0.049 4.049 13 C -0.147 4.147 14 C -0.144 4.144 15 C -0.150 4.150 16 C -0.134 4.134 17 C -0.077 4.077 18 C 0.091 3.909 19 H 0.104 0.896 20 C -0.013 4.013 21 N -0.360 5.360 22 C 0.293 3.707 23 O -0.425 6.425 24 C -0.117 4.117 25 C -0.070 4.070 26 C -0.209 4.209 27 C -0.225 4.225 28 C -0.150 4.150 29 N -0.148 5.148 30 H 0.246 0.754 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.253 0.747 43 H 0.116 0.884 44 H 0.132 0.868 45 H 0.149 0.851 46 H 0.150 0.850 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 10.818 -3.301 -4.839 12.302 hybrid contribution -0.080 0.604 0.084 0.615 sum 10.738 -2.697 -4.755 12.049 Atomic orbital electron populations 1.69847 1.05795 1.26859 1.51170 1.25225 0.95040 0.97414 0.98885 0.87167 0.80919 0.84917 0.77369 1.21644 1.18349 1.22948 1.18803 0.85386 0.94831 1.40694 0.89543 1.44306 1.08410 1.35318 1.43572 1.21444 0.97845 0.92406 0.88266 1.21071 0.98681 0.94531 0.99661 1.19590 0.96062 0.96698 0.92549 1.21177 0.97943 0.96855 0.98723 1.20948 0.99833 0.96838 0.96816 1.20947 1.00337 1.00258 0.93449 1.21089 0.97120 0.96051 0.99127 1.19988 0.97389 0.95347 0.94989 1.19612 0.89261 0.92202 0.89820 0.89573 1.21849 0.94355 0.96433 0.88695 1.45934 1.11825 1.53097 1.25114 1.20409 0.88354 0.79015 0.82873 1.90679 1.14016 1.61038 1.76772 1.20163 0.96619 1.00946 0.94007 1.19566 1.03208 0.94998 0.89222 1.20630 1.02865 0.96831 1.00559 1.20828 1.05341 0.99415 0.96960 1.21700 1.00671 0.91721 1.00868 1.41860 1.38018 1.16488 1.18450 0.75406 0.92502 0.94688 0.90707 0.90176 0.91831 0.86650 0.86739 0.86610 0.86379 0.92367 0.92387 0.74660 0.88393 0.86803 0.85133 0.85040 0.82229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.98 13.97 55.49 0.78 -24.20 16 2 C 0.04 0.90 5.27 -17.43 -0.09 0.81 16 3 Si 0.87 20.17 24.59 -169.99 -4.18 15.99 16 4 H -0.29 -6.76 6.65 56.52 0.38 -6.39 16 5 H -0.26 -5.88 6.91 56.52 0.39 -5.49 16 6 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.27 -6.53 8.86 -15.06 -0.13 -6.66 16 8 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 9 N -0.59 -12.41 2.04 -166.02 -0.34 -12.75 16 10 C 0.13 2.55 4.25 -3.50 -0.01 2.54 16 11 C -0.10 -1.76 5.88 -27.79 -0.16 -1.92 16 12 C -0.05 -0.82 5.76 -104.60 -0.60 -1.42 16 13 C -0.13 -1.87 9.59 -39.43 -0.38 -2.24 16 14 C -0.13 -1.65 10.04 -39.69 -0.40 -2.05 16 15 C -0.13 -1.73 10.05 -39.67 -0.40 -2.13 16 16 C -0.12 -1.68 9.34 -39.46 -0.37 -2.04 16 17 C -0.08 -1.27 5.17 -104.55 -0.54 -1.81 16 18 C 0.20 3.58 2.50 -68.93 -0.17 3.41 16 19 H 0.09 1.53 7.98 -51.93 -0.41 1.12 16 20 C 0.11 2.00 5.00 -4.04 -0.02 1.98 16 21 N -0.71 -12.51 5.39 -60.29 -0.32 -12.84 16 22 C 0.51 9.00 7.82 -10.98 -0.09 8.92 16 23 O -0.55 -11.42 16.03 5.56 0.09 -11.33 16 24 C -0.08 -1.11 6.24 -29.04 -0.18 -1.29 16 25 C 0.04 0.64 5.66 -81.79 -0.46 0.18 16 26 C -0.18 -2.88 10.76 -39.78 -0.43 -3.31 16 27 C -0.20 -2.74 10.86 -39.78 -0.43 -3.18 16 28 C -0.02 -0.22 11.94 -16.75 -0.20 -0.42 16 29 N -0.55 -6.84 6.07 -9.12 -0.06 -6.90 16 30 H 0.41 3.86 8.96 -40.82 -0.37 3.49 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.04 0.71 7.21 -51.93 -0.37 0.34 16 33 H 0.07 1.66 3.90 -51.93 -0.20 1.46 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 35 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 36 H 0.12 1.44 8.05 -52.49 -0.42 1.02 16 37 H 0.11 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.12 1.50 8.05 -52.49 -0.42 1.08 16 40 H 0.06 1.14 7.53 -51.93 -0.39 0.75 16 41 H 0.06 0.96 8.03 -51.93 -0.42 0.54 16 42 H 0.42 7.52 7.06 -40.82 -0.29 7.23 16 43 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 45 H 0.13 2.01 8.06 -52.48 -0.42 1.59 16 46 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 47 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 379.73 15.07 5.72 5.72 Total: -1.00 -31.30 379.73 -10.08 -41.39 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -6.70 Total: 15.56 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -5.07 Total: -10.65 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.06 Total: -56.69 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.18 Total: 15.99 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.30 -10.08 -41.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281776100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.824 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds