Wall clock time and date at job start Tue Mar 31 2020 23:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 120.00257 * 2 1 4 4 H 1.48497 * 109.46955 * 84.77529 * 3 2 1 5 5 H 1.48498 * 109.46819 * 204.77572 * 3 2 1 6 6 H 1.48492 * 109.46703 * 324.77691 * 3 2 1 7 7 C 1.38811 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00249 * 22.16878 * 7 2 1 9 9 N 1.36937 * 120.00358 * 202.16596 * 7 2 1 10 10 C 1.47241 * 121.33724 * 28.06643 * 9 7 2 11 11 C 1.53272 * 107.62899 * 115.72154 * 10 9 7 12 12 C 1.50603 * 110.81680 * 47.65441 * 11 10 9 13 13 C 1.38985 * 117.60414 * 160.27571 * 12 11 10 14 14 C 1.37901 * 120.57994 * 179.39559 * 13 12 11 15 15 C 1.38265 * 119.82832 * 0.02562 * 14 13 12 16 16 C 1.37962 * 119.71675 * 0.19850 * 15 14 13 17 17 C 1.37670 * 122.87095 * 340.04083 * 12 11 10 18 18 C 1.46683 * 121.34218 * 208.35117 * 9 7 2 19 19 H 1.08996 * 109.43327 * 344.29590 * 18 9 7 20 20 C 1.52996 * 109.43796 * 104.17407 * 18 9 7 21 21 N 1.46502 * 109.46717 * 304.99826 * 20 18 9 22 22 C 1.34783 * 119.99947 * 180.02562 * 21 20 18 23 23 O 1.21279 * 119.99781 * 359.97438 * 22 21 20 24 24 C 1.50699 * 120.00237 * 179.97438 * 22 21 20 25 25 C 1.50699 * 109.47363 * 179.97438 * 24 22 21 26 26 C 1.34848 * 125.89134 * 274.69077 * 25 24 22 27 27 C 1.40887 * 107.41597 * 179.88401 * 26 25 24 28 28 C 1.34854 * 107.41859 * 0.38150 * 27 26 25 29 29 N 1.36341 * 125.88753 * 94.99955 * 25 24 22 30 30 H 0.97000 * 125.63476 * 359.95954 * 29 25 24 31 31 H 0.97006 * 119.99862 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.77749 * 235.30579 * 10 9 7 33 33 H 1.09002 * 109.77455 * 356.11190 * 10 9 7 34 34 H 1.09005 * 109.30847 * 287.25439 * 11 10 9 35 35 H 1.09002 * 109.08470 * 167.91660 * 11 10 9 36 36 H 1.07999 * 119.70542 * 359.41614 * 13 12 11 37 37 H 1.07999 * 120.08905 * 180.02562 * 14 13 12 38 38 H 1.07994 * 120.14708 * 180.21492 * 15 14 13 39 39 H 1.07998 * 119.75120 * 179.97438 * 16 15 14 40 40 H 1.08999 * 109.47546 * 64.99448 * 20 18 9 41 41 H 1.09002 * 109.47466 * 185.00254 * 20 18 9 42 42 H 0.96992 * 120.00415 * 359.97438 * 21 20 18 43 43 H 1.09000 * 109.47260 * 300.00541 * 24 22 21 44 44 H 1.09002 * 109.46603 * 59.99782 * 24 22 21 45 45 H 1.08006 * 126.29049 * 0.02834 * 26 25 24 46 46 H 1.08002 * 126.29243 * 180.12835 * 27 26 25 47 47 H 1.07996 * 125.89232 * 179.73228 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3873 2.1101 1.3942 5 1 3.5986 1.4107 -0.5867 6 1 1.5072 2.6182 -0.8075 7 6 2.0101 -1.2022 0.0005 8 1 1.5300 -2.1031 -0.3520 9 7 3.3036 -1.2459 0.4480 10 6 3.7982 -0.2924 1.4551 11 6 4.1659 -1.0918 2.7100 12 6 5.0007 -2.2936 2.3536 13 6 5.7563 -2.8756 3.3645 14 6 6.5332 -3.9859 3.1091 15 6 6.5629 -4.5266 1.8369 16 6 5.8175 -3.9482 0.8304 17 6 5.0369 -2.8287 1.0857 18 6 4.2539 -2.2405 -0.0613 19 1 3.7091 -3.0338 -0.5730 20 6 5.2161 -1.5693 -1.0433 21 7 4.4497 -0.8998 -2.0972 22 6 5.0917 -0.2376 -3.0801 23 8 6.3037 -0.1958 -3.0918 24 6 4.3035 0.4506 -4.1646 25 6 5.2512 1.1119 -5.1319 26 6 5.7916 2.3397 -4.9946 27 6 6.6163 2.5649 -6.1145 28 6 6.5418 1.4696 -6.8976 29 7 5.7053 0.5743 -6.2996 30 1 5.4721 -0.3007 -6.6473 31 1 -0.4850 0.8401 0.0004 32 1 4.6788 0.2240 1.0730 33 1 3.0186 0.4319 1.6914 34 1 3.2537 -1.4234 3.2063 35 1 4.7303 -0.4515 3.3879 36 1 5.7345 -2.4547 4.3589 37 1 7.1169 -4.4320 3.9007 38 1 7.1668 -5.3981 1.6319 39 1 5.8406 -4.3698 -0.1636 40 1 5.8229 -0.8352 -0.5132 41 1 5.8649 -2.3233 -1.4891 42 1 3.4805 -0.9336 -2.0881 43 1 3.6966 -0.2836 -4.6944 44 1 3.6546 1.2048 -3.7191 45 1 5.6249 3.0236 -4.1755 46 1 7.1979 3.4534 -6.3117 47 1 7.0556 1.3265 -7.8366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281776100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:11 Heat of formation + Delta-G solvation = 42.619515 kcal Electronic energy + Delta-G solvation = -29615.372499 eV Core-core repulsion = 25763.452849 eV Total energy + Delta-G solvation = -3851.919651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.07141 -41.15325 -40.19072 -38.01901 -35.67540 -34.34172 -33.67555 -32.74500 -32.03360 -31.81514 -30.27368 -28.81733 -27.33458 -25.61185 -24.69420 -23.51769 -22.76734 -21.74429 -21.41424 -21.01510 -20.41671 -18.76783 -18.47814 -18.01501 -17.47071 -17.27902 -16.74115 -16.56095 -16.12324 -15.88860 -15.56091 -15.25608 -14.81098 -14.74924 -14.66976 -14.44919 -14.28823 -14.15756 -14.00838 -13.84502 -13.72074 -13.46051 -13.31357 -13.15372 -13.00777 -12.62381 -12.55618 -12.52724 -12.25039 -12.18256 -11.75325 -11.60627 -11.36303 -10.96973 -10.69874 -9.97838 -9.74044 -9.61007 -9.40219 -9.02577 -8.93501 -8.16906 -5.48592 0.52126 0.55299 1.28024 1.28885 1.44850 1.52247 1.64970 2.05306 2.37813 2.40923 2.57967 2.92154 2.99638 3.23823 3.74408 3.84565 3.90187 4.01488 4.07942 4.15557 4.22648 4.30936 4.33328 4.37641 4.43478 4.44923 4.50911 4.61311 4.62339 4.66400 4.70178 4.83077 4.83715 4.91152 5.00560 5.08846 5.19701 5.32875 5.33561 5.39502 5.51729 5.62496 5.67655 5.83916 5.86695 6.06700 6.16434 6.19814 6.21060 6.62628 6.81870 6.84219 7.27646 7.58011 8.04047 9.01613 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010462 B = 0.004034 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.794586 B = 6939.017270 C = 8764.193406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.006 4.006 3 Si 0.921 3.079 4 H -0.292 1.292 5 H -0.255 1.255 6 H -0.313 1.313 7 C -0.240 4.240 8 H 0.064 0.936 9 N -0.601 5.601 10 C 0.123 3.877 11 C -0.093 4.093 12 C -0.075 4.075 13 C -0.133 4.133 14 C -0.122 4.122 15 C -0.127 4.127 16 C -0.121 4.121 17 C -0.099 4.099 18 C 0.204 3.796 19 H 0.085 0.915 20 C 0.123 3.877 21 N -0.709 5.709 22 C 0.508 3.492 23 O -0.579 6.579 24 C -0.072 4.072 25 C 0.024 3.976 26 C -0.215 4.215 27 C -0.227 4.227 28 C -0.003 4.003 29 N -0.546 5.546 30 H 0.425 0.575 31 H 0.262 0.738 32 H 0.034 0.966 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.134 0.866 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.133 0.867 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.413 0.587 43 H 0.129 0.871 44 H 0.112 0.888 45 H 0.119 0.881 46 H 0.146 0.854 47 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.685 -4.945 -5.087 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.203 4.203 3 Si 0.751 3.249 4 H -0.220 1.220 5 H -0.179 1.179 6 H -0.242 1.242 7 C -0.369 4.369 8 H 0.081 0.919 9 N -0.324 5.324 10 C -0.002 4.002 11 C -0.132 4.132 12 C -0.075 4.075 13 C -0.150 4.150 14 C -0.140 4.140 15 C -0.145 4.145 16 C -0.140 4.140 17 C -0.100 4.100 18 C 0.097 3.903 19 H 0.103 0.897 20 C -0.004 4.004 21 N -0.360 5.360 22 C 0.295 3.705 23 O -0.460 6.460 24 C -0.112 4.112 25 C -0.090 4.090 26 C -0.240 4.240 27 C -0.251 4.251 28 C -0.134 4.134 29 N -0.142 5.142 30 H 0.263 0.737 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.152 0.848 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.151 0.849 40 H 0.056 0.944 41 H 0.090 0.910 42 H 0.251 0.749 43 H 0.147 0.853 44 H 0.131 0.869 45 H 0.137 0.863 46 H 0.164 0.836 47 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 13.315 -4.986 -5.157 15.124 hybrid contribution -0.737 0.994 0.208 1.255 sum 12.578 -3.992 -4.949 14.094 Atomic orbital electron populations 1.69942 1.07160 1.27096 1.54457 1.25575 0.95230 0.99548 0.99970 0.86303 0.79794 0.82029 0.76743 1.22004 1.17879 1.24171 1.18676 0.86465 0.93573 1.38148 0.91879 1.44330 1.07945 1.35985 1.44120 1.21406 0.96860 0.92360 0.89544 1.20934 0.98840 0.95155 0.98258 1.19644 0.97369 0.97065 0.93470 1.21399 0.97436 0.97274 0.98935 1.21369 0.98969 0.95882 0.97742 1.21357 0.99510 1.00668 0.92969 1.21294 0.96837 0.95306 1.00535 1.19945 0.98751 0.96807 0.94544 1.19634 0.88832 0.91168 0.90631 0.89718 1.21727 0.94109 0.96042 0.88497 1.46011 1.11639 1.53155 1.25222 1.20933 0.88123 0.78361 0.83098 1.90654 1.15512 1.62244 1.77592 1.20154 0.96444 1.01343 0.93279 1.19572 1.03941 0.95127 0.90330 1.20841 1.04273 0.97528 1.01370 1.21130 1.05996 1.01022 0.96948 1.22337 0.99129 0.90534 1.01431 1.41905 1.37518 1.17182 1.17599 0.73692 0.92892 0.94837 0.92861 0.91462 0.89526 0.84804 0.83498 0.83469 0.84890 0.94396 0.90955 0.74931 0.85337 0.86941 0.86336 0.83636 0.78244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.28 13.97 21.65 0.30 -53.98 16 2 C -0.01 -0.34 5.27 84.86 0.45 0.11 16 3 Si 0.92 43.33 24.59 68.60 1.69 45.01 16 4 H -0.29 -13.75 6.65 99.48 0.66 -13.09 16 5 H -0.25 -11.59 6.91 99.48 0.69 -10.90 16 6 H -0.31 -15.17 7.11 99.48 0.71 -14.46 16 7 C -0.24 -11.89 8.86 84.03 0.74 -11.15 16 8 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 9 N -0.60 -25.43 2.04 -679.17 -1.39 -26.81 16 10 C 0.12 5.04 4.25 86.33 0.37 5.40 16 11 C -0.09 -3.21 5.88 29.91 0.18 -3.04 16 12 C -0.08 -2.43 5.76 -19.85 -0.11 -2.54 16 13 C -0.13 -3.46 9.59 22.37 0.21 -3.25 16 14 C -0.12 -2.69 10.04 22.20 0.22 -2.47 16 15 C -0.13 -2.84 10.05 22.21 0.22 -2.62 16 16 C -0.12 -3.23 9.34 22.35 0.21 -3.02 16 17 C -0.10 -3.21 5.17 -19.82 -0.10 -3.31 16 18 C 0.20 7.30 2.50 44.25 0.11 7.41 16 19 H 0.08 3.01 7.98 -2.39 -0.02 2.99 16 20 C 0.12 4.30 5.00 86.38 0.43 4.73 16 21 N -0.71 -25.04 5.39 -463.06 -2.49 -27.53 16 22 C 0.51 17.89 7.82 87.66 0.69 18.57 16 23 O -0.58 -24.14 16.03 -3.03 -0.05 -24.19 16 24 C -0.07 -2.04 6.24 29.10 0.18 -1.86 16 25 C 0.02 0.69 5.66 41.08 0.23 0.93 16 26 C -0.22 -6.78 10.76 22.14 0.24 -6.54 16 27 C -0.23 -5.97 10.86 22.14 0.24 -5.73 16 28 C 0.00 -0.06 11.94 83.21 0.99 0.93 16 29 N -0.55 -12.43 6.07 -182.77 -1.11 -13.54 16 30 H 0.42 6.94 8.96 -92.71 -0.83 6.11 16 31 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 32 H 0.03 1.37 7.21 -2.39 -0.02 1.36 16 33 H 0.05 2.40 3.90 -2.39 -0.01 2.39 16 34 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 35 H 0.09 2.52 8.11 -2.39 -0.02 2.50 16 36 H 0.13 2.92 8.05 -2.91 -0.02 2.89 16 37 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 39 H 0.13 3.04 8.05 -2.91 -0.02 3.01 16 40 H 0.04 1.49 7.53 -2.39 -0.02 1.47 16 41 H 0.07 2.33 8.03 -2.39 -0.02 2.31 16 42 H 0.41 15.04 7.06 -92.71 -0.65 14.39 16 43 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 44 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 45 H 0.12 3.84 8.06 -2.91 -0.02 3.81 16 46 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 47 H 0.20 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -69.66 379.73 1.90 -67.76 By element: Atomic # 1 Polarization: 41.24 SS G_CDS: -0.55 Total: 40.70 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 5.50 Total: -7.42 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -4.69 Total: -121.86 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.05 Total: -24.19 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.69 Total: 45.01 kcal Total: -69.66 1.90 -67.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281776100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.381 kcal (2) G-P(sol) polarization free energy of solvation -69.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds