Wall clock time and date at job start Tue Mar 31 2020 23:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00052 * 2 1 4 4 H 1.48496 * 109.47330 * 90.00134 * 3 2 1 5 5 H 1.48500 * 109.47068 * 210.00242 * 3 2 1 6 6 H 1.48509 * 109.47000 * 329.99949 * 3 2 1 7 7 C 1.38803 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00255 * 359.97438 * 7 2 1 9 9 N 1.36941 * 119.99871 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99849 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46853 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.43587 * 307.53895 * 11 10 9 13 13 C 1.54885 * 110.49201 * 70.22674 * 11 10 9 14 14 C 1.54885 * 102.75153 * 156.61910 * 13 11 10 15 15 C 1.54256 * 104.19878 * 322.05756 * 14 13 11 16 16 H 1.08995 * 110.07765 * 142.91727 * 15 14 13 17 17 N 1.46500 * 110.03378 * 264.33015 * 15 14 13 18 18 C 1.34784 * 119.99551 * 272.16466 * 17 15 14 19 19 O 1.21539 * 120.00083 * 359.97438 * 18 17 15 20 20 C 1.47948 * 119.99958 * 180.02562 * 18 17 15 21 21 N 1.32198 * 120.15711 * 354.68804 * 20 18 17 22 22 C 1.32032 * 122.67825 * 180.02562 * 21 20 18 23 23 C 1.36688 * 122.03135 * 0.02562 * 22 21 20 24 24 C 1.40528 * 118.84616 * 359.97438 * 23 22 21 25 25 C 1.40326 * 122.22321 * 179.97438 * 24 23 22 26 26 C 1.36211 * 119.44906 * 179.05912 * 25 24 23 27 27 C 1.39389 * 120.99919 * 0.98060 * 26 25 24 28 28 C 1.36255 * 121.08086 * 359.33265 * 27 26 25 29 29 C 1.40097 * 119.53945 * 0.03610 * 28 27 26 30 30 C 1.53879 * 106.59718 * 23.60644 * 15 14 13 31 31 H 0.97002 * 119.99970 * 359.97438 * 1 2 3 32 32 H 0.96998 * 119.99925 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47100 * 300.00047 * 10 9 7 34 34 H 1.08992 * 109.47128 * 60.00309 * 10 9 7 35 35 H 1.09004 * 110.75470 * 274.93662 * 13 11 10 36 36 H 1.09000 * 110.75533 * 38.29848 * 13 11 10 37 37 H 1.09001 * 110.48366 * 203.37750 * 14 13 11 38 38 H 1.08998 * 110.60093 * 80.79484 * 14 13 11 39 39 H 0.96991 * 120.00727 * 92.16615 * 17 15 14 40 40 H 1.07997 * 118.98411 * 179.97438 * 22 21 20 41 41 H 1.07998 * 120.57341 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.27072 * 0.02562 * 25 24 23 43 43 H 1.07997 * 119.49772 * 180.31799 * 26 25 24 44 44 H 1.08004 * 119.45669 * 179.36982 * 27 26 25 45 45 H 1.08003 * 120.23020 * 180.02562 * 28 27 26 46 46 H 1.08993 * 110.03356 * 240.71284 * 30 15 14 47 47 H 1.09002 * 110.06894 * 119.30653 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5478 1.4402 -0.7001 6 1 1.4476 2.6527 -0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6163 -2.1913 -0.0011 12 1 5.8767 -1.5099 -0.8110 13 6 6.0597 -1.6096 1.3642 14 6 7.5676 -1.9600 1.4116 15 6 7.6509 -3.3609 0.7712 16 1 8.5576 -3.4451 0.1722 17 7 7.6408 -4.3905 1.8133 18 6 8.7978 -4.7886 2.3784 19 8 9.8495 -4.2938 2.0231 20 6 8.7878 -5.8288 3.4304 21 7 7.6403 -6.2946 3.8929 22 6 7.5732 -7.2216 4.8307 23 6 8.6937 -7.7670 5.3923 24 6 9.9545 -7.3258 4.9556 25 6 11.1501 -7.8366 5.4836 26 6 12.3416 -7.3820 5.0050 27 6 12.3907 -6.4032 4.0138 28 6 11.2493 -5.8809 3.4838 29 6 10.0050 -6.3334 3.9419 30 6 6.4101 -3.5080 -0.1270 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3621 -0.0014 33 1 3.8491 -3.0422 0.8891 34 1 3.8485 -3.0426 -0.8908 35 1 5.9129 -0.5298 1.3901 36 1 5.5249 -2.0928 2.1819 37 1 7.9200 -1.9903 2.4426 38 1 8.1468 -1.2408 0.8325 39 1 6.8016 -4.7857 2.0966 40 1 6.6032 -7.5587 5.1649 41 1 8.6114 -8.5245 6.1577 42 1 11.1257 -8.5952 6.2519 43 1 13.2622 -7.7784 5.4071 44 1 13.3493 -6.0535 3.6598 45 1 11.3034 -5.1233 2.7161 46 1 5.8007 -4.3454 0.2124 47 1 6.7141 -3.6632 -1.1622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284209331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:41 Heat of formation + Delta-G solvation = 8.992822 kcal Electronic energy + Delta-G solvation = -28133.328876 eV Core-core repulsion = 24279.951062 eV Total energy + Delta-G solvation = -3853.377813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.19708 -40.75671 -39.18641 -38.37678 -36.62036 -34.77831 -33.99768 -33.22509 -32.17213 -30.86008 -30.32280 -29.16793 -26.51752 -25.70553 -24.52719 -23.85737 -23.66992 -22.22880 -21.27229 -20.94711 -19.58965 -19.23499 -18.44418 -18.13429 -17.49240 -16.86912 -16.71088 -16.42293 -16.16328 -16.10801 -15.62160 -15.46875 -14.95193 -14.93892 -14.69294 -14.63644 -14.43684 -14.22288 -13.87406 -13.68146 -13.53428 -13.16412 -12.88015 -12.78777 -12.70639 -12.57961 -12.36298 -12.20086 -11.97981 -11.85729 -11.67814 -11.58913 -11.49014 -11.21119 -11.08121 -10.94831 -10.50064 -10.17384 -10.11676 -9.27355 -9.08115 -8.02277 -5.35007 -0.98942 -0.13595 0.68684 1.37530 1.41032 1.48369 1.59293 1.98212 2.19711 2.48660 3.04899 3.08209 3.29085 3.48226 3.55276 3.60043 3.69360 3.80142 3.84550 3.89964 3.96233 4.18603 4.27363 4.37642 4.41568 4.46690 4.49764 4.51446 4.59952 4.65801 4.70327 4.72943 4.81552 4.91000 4.97726 5.06027 5.09595 5.10876 5.15687 5.21100 5.33404 5.39954 5.46413 5.51548 5.57459 5.64991 5.76707 5.89942 6.22140 6.33948 6.74024 7.07868 7.09162 7.86273 8.05525 9.19361 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022554 B = 0.002099 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.143633 B =13333.612520 C =14005.000579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.955 3.045 4 H -0.279 1.279 5 H -0.250 1.250 6 H -0.296 1.296 7 C -0.233 4.233 8 H 0.056 0.944 9 N -0.757 5.757 10 C 0.161 3.839 11 C -0.093 4.093 12 H 0.081 0.919 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.144 3.856 16 H 0.094 0.906 17 N -0.691 5.691 18 C 0.571 3.429 19 O -0.554 6.554 20 C 0.089 3.911 21 N -0.466 5.466 22 C 0.052 3.948 23 C -0.109 4.109 24 C -0.054 4.054 25 C -0.111 4.111 26 C -0.100 4.100 27 C -0.114 4.114 28 C -0.126 4.126 29 C -0.087 4.087 30 C -0.112 4.112 31 H 0.257 0.743 32 H 0.366 0.634 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.415 0.585 40 H 0.187 0.813 41 H 0.183 0.817 42 H 0.167 0.833 43 H 0.161 0.839 44 H 0.147 0.853 45 H 0.153 0.847 46 H 0.079 0.921 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.259 -19.003 12.016 36.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.782 3.218 4 H -0.205 1.205 5 H -0.175 1.175 6 H -0.222 1.222 7 C -0.364 4.364 8 H 0.074 0.926 9 N -0.403 5.403 10 C 0.035 3.965 11 C -0.112 4.112 12 H 0.100 0.900 13 C -0.152 4.152 14 C -0.162 4.162 15 C 0.040 3.960 16 H 0.112 0.888 17 N -0.342 5.342 18 C 0.357 3.643 19 O -0.433 6.433 20 C -0.062 4.062 21 N -0.178 5.178 22 C -0.094 4.094 23 C -0.128 4.128 24 C -0.060 4.060 25 C -0.129 4.129 26 C -0.119 4.119 27 C -0.132 4.132 28 C -0.145 4.145 29 C -0.090 4.090 30 C -0.150 4.150 31 H 0.066 0.934 32 H 0.199 0.801 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.252 0.748 40 H 0.204 0.796 41 H 0.200 0.800 42 H 0.185 0.815 43 H 0.178 0.822 44 H 0.164 0.836 45 H 0.170 0.830 46 H 0.098 0.902 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 28.937 -18.486 11.445 36.195 hybrid contribution -0.092 0.763 0.367 0.851 sum 28.846 -17.723 11.811 35.857 Atomic orbital electron populations 1.69891 1.07124 1.26638 1.59884 1.25531 0.96172 1.01330 1.02802 0.85401 0.78720 0.79543 0.78104 1.20480 1.17483 1.22237 1.19060 0.82892 0.93428 1.41033 0.92643 1.42718 1.02364 1.04322 1.90867 1.20851 0.90369 0.87209 0.98025 1.22112 0.93225 0.97638 0.98229 0.90035 1.22496 0.95303 1.00558 0.96825 1.22709 0.96250 0.96355 1.00904 1.21686 0.99707 0.86624 0.88015 0.88786 1.46098 1.09272 1.40037 1.38760 1.17991 0.84105 0.81201 0.81043 1.90565 1.31137 1.57765 1.63855 1.21254 0.89577 0.97629 0.97699 1.67219 1.28331 1.10911 1.11370 1.22746 1.00990 0.92888 0.92795 1.22616 0.91027 0.99518 0.99632 1.18593 0.96263 0.95678 0.95423 1.21386 0.90391 1.00581 1.00498 1.21481 0.99585 0.95465 0.95323 1.21459 0.99043 0.96292 0.96410 1.22079 0.91420 1.00328 1.00707 1.18903 0.94307 0.98003 0.97829 1.22368 0.94625 0.97399 1.00656 0.93384 0.80096 0.95793 0.95804 0.92149 0.92130 0.92253 0.89652 0.74807 0.79571 0.79994 0.81544 0.82186 0.83551 0.82969 0.90202 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.06 13.97 21.65 0.30 -63.76 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 3 Si 0.96 46.14 27.74 68.60 1.90 48.04 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.25 -10.86 6.52 99.48 0.65 -10.21 16 6 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 7 C -0.23 -13.54 10.47 84.03 0.88 -12.66 16 8 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 9 N -0.76 -35.65 5.30 -343.47 -1.82 -37.47 16 10 C 0.16 6.03 5.54 86.38 0.48 6.51 16 11 C -0.09 -2.60 2.89 -9.72 -0.03 -2.62 16 12 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 13 C -0.11 -3.14 6.19 31.88 0.20 -2.94 16 14 C -0.12 -2.92 6.54 31.66 0.21 -2.71 16 15 C 0.14 3.20 3.25 45.71 0.15 3.35 16 16 H 0.09 2.11 7.56 -2.39 -0.02 2.10 16 17 N -0.69 -16.00 5.02 -441.88 -2.22 -18.21 16 18 C 0.57 14.86 7.77 86.82 0.67 15.53 16 19 O -0.55 -16.22 13.09 -3.84 -0.05 -16.27 16 20 C 0.09 2.16 6.81 42.43 0.29 2.45 16 21 N -0.47 -10.23 9.52 -184.95 -1.76 -11.99 16 22 C 0.05 0.81 11.06 84.30 0.93 1.74 16 23 C -0.11 -1.31 9.88 22.47 0.22 -1.09 16 24 C -0.05 -0.88 5.75 -21.29 -0.12 -1.00 16 25 C -0.11 -1.17 9.82 22.31 0.22 -0.95 16 26 C -0.10 -1.02 9.95 22.07 0.22 -0.80 16 27 C -0.11 -1.67 9.95 22.08 0.22 -1.45 16 28 C -0.13 -2.69 9.23 22.26 0.21 -2.49 16 29 C -0.09 -1.94 5.76 -21.14 -0.12 -2.06 16 30 C -0.11 -2.45 6.14 31.32 0.19 -2.26 16 31 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 32 H 0.37 16.41 5.50 -92.71 -0.51 15.90 16 33 H 0.02 0.92 8.02 -2.39 -0.02 0.90 16 34 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.06 1.79 7.96 -2.39 -0.02 1.77 16 37 H 0.06 1.50 8.04 -2.39 -0.02 1.48 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.41 9.14 7.68 -92.72 -0.71 8.43 16 40 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 42 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 43 H 0.16 0.56 8.06 -2.91 -0.02 0.53 16 44 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 45 H 0.15 3.78 4.96 -3.01 -0.01 3.77 16 46 H 0.08 1.72 7.31 -2.39 -0.02 1.70 16 47 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -76.43 382.28 1.36 -75.07 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: -0.28 Total: 31.61 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 5.28 Total: -7.01 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -5.50 Total: -131.44 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.05 Total: -16.27 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.90 Total: 48.04 kcal Total: -76.43 1.36 -75.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284209331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.064 kcal (2) G-P(sol) polarization free energy of solvation -76.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds