Wall clock time and date at job start Tue Mar 31 2020 23:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86791 * 120.00032 * 2 1 4 4 H 1.48503 * 109.47233 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47444 * 299.99696 * 3 2 1 6 6 H 1.48500 * 109.47264 * 59.99962 * 3 2 1 7 7 C 1.38811 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00189 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99742 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47014 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.67234 * 56.78816 * 11 10 9 13 13 C 1.54887 * 110.75674 * 293.54848 * 11 10 9 14 14 C 1.54271 * 104.19650 * 203.55746 * 13 11 10 15 15 C 1.53875 * 106.59492 * 23.61246 * 14 13 11 16 16 H 1.09000 * 110.03422 * 119.33482 * 15 14 13 17 17 N 1.46503 * 110.02930 * 240.71590 * 15 14 13 18 18 C 1.34779 * 119.99877 * 272.90861 * 17 15 14 19 19 O 1.21566 * 119.99802 * 359.97438 * 18 17 15 20 20 C 1.47760 * 120.00433 * 180.02562 * 18 17 15 21 21 C 1.40602 * 120.26253 * 0.02562 * 20 18 17 22 22 N 1.30804 * 121.53587 * 179.97438 * 21 20 18 23 23 C 1.33815 * 121.72152 * 359.97438 * 22 21 20 24 24 C 1.40529 * 120.82775 * 180.02562 * 23 22 21 25 25 C 1.36126 * 119.81982 * 179.97438 * 24 23 22 26 26 C 1.39342 * 121.08714 * 0.02562 * 25 24 23 27 27 C 1.36146 * 120.83497 * 359.71124 * 26 25 24 28 28 C 1.40536 * 119.61287 * 0.55670 * 27 26 25 29 29 C 1.39007 * 120.27430 * 179.97438 * 20 18 17 30 30 C 1.54270 * 106.64179 * 0.02562 * 15 14 13 31 31 H 0.97004 * 119.99774 * 359.97438 * 1 2 3 32 32 H 0.96999 * 119.99769 * 0.02562 * 9 7 2 33 33 H 1.09003 * 109.47023 * 60.00248 * 10 9 7 34 34 H 1.09000 * 109.47419 * 300.00632 * 10 9 7 35 35 H 1.09000 * 110.48698 * 84.88326 * 13 11 10 36 36 H 1.08995 * 110.59869 * 322.29055 * 13 11 10 37 37 H 1.09003 * 110.03303 * 264.32618 * 14 13 11 38 38 H 1.09000 * 110.07304 * 142.91639 * 14 13 11 39 39 H 0.96995 * 120.00368 * 92.91124 * 17 15 14 40 40 H 1.07998 * 119.23834 * 0.02562 * 21 20 18 41 41 H 1.08003 * 120.08645 * 359.97438 * 24 23 22 42 42 H 1.08000 * 119.45891 * 179.97438 * 25 24 23 43 43 H 1.08008 * 119.58307 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.18863 * 180.02562 * 27 26 25 45 45 H 1.08001 * 121.01578 * 0.02674 * 29 20 18 46 46 H 1.09005 * 110.48188 * 95.04917 * 30 15 14 47 47 H 1.08997 * 110.48541 * 217.68518 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0016 11 6 1.0636 -4.8197 0.0022 12 1 0.3887 -4.7494 -0.8508 13 6 0.2676 -4.8606 1.3303 14 6 -0.1960 -6.3272 1.4485 15 6 0.7809 -7.1662 0.6062 16 1 1.2895 -7.8939 1.2387 17 7 0.0567 -7.8532 -0.4661 18 6 -0.5038 -9.0572 -0.2369 19 8 -0.4080 -9.5734 0.8596 20 6 -1.2337 -9.7505 -1.3185 21 6 -1.3465 -9.1593 -2.5892 22 7 -1.9865 -9.7510 -3.5646 23 6 -2.5648 -10.9469 -3.4033 24 6 -3.2473 -11.5657 -4.4645 25 6 -3.8277 -12.7828 -4.2778 26 6 -3.7586 -13.4316 -3.0466 27 6 -3.1020 -12.8670 -1.9961 28 6 -2.4960 -11.6085 -2.1514 29 6 -1.8135 -10.9927 -1.0884 30 6 1.8050 -6.1811 0.0056 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 0.0016 33 1 2.6852 -3.7142 0.8912 34 1 2.6840 -3.7150 -0.8888 35 1 -0.5916 -4.1918 1.2808 36 1 0.9092 -4.5944 2.1702 37 1 -1.2089 -6.4312 1.0595 38 1 -0.1615 -6.6477 2.4898 39 1 -0.0193 -7.4415 -1.3411 40 1 -0.8936 -8.1947 -2.7643 41 1 -3.3110 -11.0770 -5.4255 42 1 -4.3511 -13.2530 -5.0973 43 1 -4.2283 -14.3967 -2.9254 44 1 -3.0546 -13.3793 -1.0465 45 1 -1.7419 -11.4699 -0.1222 46 1 2.6964 -6.1291 0.6308 47 1 2.0673 -6.4759 -1.0105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284217206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:06 Heat of formation + Delta-G solvation = -1.875450 kcal Electronic energy + Delta-G solvation = -27600.075497 eV Core-core repulsion = 23746.226400 eV Total energy + Delta-G solvation = -3853.849097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.06251 -40.89475 -39.21213 -37.91642 -36.47616 -34.79509 -34.52097 -33.02488 -31.72987 -31.07037 -30.13721 -29.00860 -26.40669 -25.46730 -25.12531 -23.94994 -23.12814 -22.35053 -21.19317 -20.97047 -19.43053 -19.09865 -18.90129 -18.18720 -17.23258 -16.81400 -16.68933 -16.35444 -15.85945 -15.79245 -15.55493 -15.34875 -15.21078 -15.01243 -14.89969 -14.56573 -14.40905 -14.38967 -14.10832 -13.54730 -13.10013 -12.94128 -12.82430 -12.77233 -12.74742 -12.45064 -12.27708 -12.11542 -12.05531 -11.86434 -11.62692 -11.60854 -11.50053 -11.44060 -11.32360 -10.90976 -10.55695 -10.20125 -9.84639 -9.32373 -8.95781 -7.93777 -5.21457 -0.84425 -0.44773 0.81655 1.47898 1.48418 1.48456 1.58563 2.03234 2.19677 2.57149 3.03860 3.12850 3.40007 3.51085 3.54074 3.59351 3.61868 3.67734 3.78018 3.91455 3.95829 4.19595 4.20509 4.30550 4.41131 4.45107 4.54356 4.54934 4.62248 4.68830 4.74672 4.77302 4.80214 4.89453 4.93506 5.03401 5.07323 5.09433 5.18834 5.24594 5.32801 5.38331 5.39690 5.44865 5.50336 5.57050 5.58233 5.82484 6.29344 6.43346 6.73687 7.08880 7.35561 8.14038 8.36179 9.30079 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020942 B = 0.001849 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.708806 B =15142.983130 C =15983.198209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.242 4.242 8 H 0.075 0.925 9 N -0.744 5.744 10 C 0.157 3.843 11 C -0.090 4.090 12 H 0.074 0.926 13 C -0.109 4.109 14 C -0.124 4.124 15 C 0.149 3.851 16 H 0.090 0.910 17 N -0.704 5.704 18 C 0.568 3.432 19 O -0.571 6.571 20 C -0.207 4.207 21 C 0.159 3.841 22 N -0.497 5.497 23 C 0.118 3.882 24 C -0.121 4.121 25 C -0.078 4.078 26 C -0.116 4.116 27 C -0.093 4.093 28 C -0.128 4.128 29 C 0.012 3.988 30 C -0.110 4.110 31 H 0.250 0.750 32 H 0.374 0.626 33 H 0.020 0.980 34 H 0.022 0.978 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.411 0.589 40 H 0.182 0.818 41 H 0.143 0.857 42 H 0.163 0.837 43 H 0.163 0.837 44 H 0.155 0.845 45 H 0.159 0.841 46 H 0.091 0.909 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.168 -31.651 -6.816 32.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.374 4.374 8 H 0.093 0.907 9 N -0.387 5.387 10 C 0.031 3.969 11 C -0.109 4.109 12 H 0.092 0.908 13 C -0.147 4.147 14 C -0.163 4.163 15 C 0.045 3.955 16 H 0.108 0.892 17 N -0.356 5.356 18 C 0.355 3.645 19 O -0.452 6.452 20 C -0.213 4.213 21 C -0.015 4.015 22 N -0.204 5.204 23 C -0.002 4.002 24 C -0.139 4.139 25 C -0.098 4.098 26 C -0.133 4.133 27 C -0.111 4.111 28 C -0.130 4.130 29 C -0.015 4.015 30 C -0.148 4.148 31 H 0.059 0.941 32 H 0.206 0.794 33 H 0.038 0.962 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.249 0.751 40 H 0.198 0.802 41 H 0.160 0.840 42 H 0.181 0.819 43 H 0.181 0.819 44 H 0.173 0.827 45 H 0.177 0.823 46 H 0.110 0.890 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.020 -31.583 -6.915 32.887 hybrid contribution -0.021 1.395 0.597 1.518 sum -6.041 -30.188 -6.317 31.428 Atomic orbital electron populations 1.69825 1.06587 1.25882 1.59834 1.25556 0.96402 1.01081 1.03995 0.85085 0.78273 0.79902 0.76586 1.19007 1.22088 1.22196 1.19700 0.91533 0.85511 1.40659 0.90663 1.42575 1.05660 1.01193 1.89252 1.20830 0.93810 0.84640 0.97606 1.22226 0.96810 0.94045 0.97839 0.90800 1.22250 0.99293 0.95609 0.97549 1.22517 0.99053 0.94284 1.00462 1.21565 0.91944 0.93715 0.88324 0.89208 1.46033 1.54585 1.18893 1.16067 1.18132 0.78262 0.81104 0.86957 1.90759 1.61366 1.67225 1.25845 1.20891 1.05936 0.98333 0.96097 1.23342 0.92162 0.99150 0.86846 1.67984 1.09746 1.09580 1.33126 1.19447 0.96236 0.90969 0.93579 1.21075 0.98152 0.96419 0.98282 1.21440 0.96193 0.93470 0.98696 1.21414 0.98146 1.01490 0.92266 1.21414 0.95867 0.92611 1.01242 1.19039 1.01950 0.97972 0.94050 1.22156 0.88426 0.91915 0.98958 1.22621 0.97530 0.91845 1.02821 0.94112 0.79438 0.96181 0.96010 0.93472 0.92172 0.91935 0.91161 0.75076 0.80161 0.83957 0.81929 0.81938 0.82714 0.82326 0.89010 0.88875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.81 13.06 21.65 0.28 -59.53 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 3 Si 0.97 46.44 29.55 68.60 2.03 48.47 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 7 C -0.24 -13.56 9.99 84.03 0.84 -12.72 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -37.51 5.45 -343.45 -1.87 -39.38 16 10 C 0.16 6.02 5.71 86.38 0.49 6.51 16 11 C -0.09 -2.63 2.96 -9.46 -0.03 -2.66 16 12 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 13 C -0.11 -3.29 5.97 31.67 0.19 -3.11 16 14 C -0.12 -3.13 6.59 31.32 0.21 -2.92 16 15 C 0.15 3.24 3.23 45.72 0.15 3.39 16 16 H 0.09 2.06 7.58 -2.39 -0.02 2.04 16 17 N -0.70 -13.76 4.89 -442.03 -2.16 -15.92 16 18 C 0.57 13.10 7.77 86.76 0.67 13.77 16 19 O -0.57 -16.83 16.05 -3.93 -0.06 -16.89 16 20 C -0.21 -4.22 5.89 -20.00 -0.12 -4.34 16 21 C 0.16 3.04 10.68 85.42 0.91 3.95 16 22 N -0.50 -10.87 10.30 -187.68 -1.93 -12.80 16 23 C 0.12 2.34 6.61 40.27 0.27 2.61 16 24 C -0.12 -1.78 9.97 22.34 0.22 -1.56 16 25 C -0.08 -0.70 9.94 22.04 0.22 -0.48 16 26 C -0.12 -0.92 9.96 22.05 0.22 -0.70 16 27 C -0.09 -1.06 9.77 22.34 0.22 -0.84 16 28 C -0.13 -2.25 5.74 -21.29 -0.12 -2.37 16 29 C 0.01 0.23 9.46 23.01 0.22 0.44 16 30 C -0.11 -2.32 5.89 31.71 0.19 -2.14 16 31 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.37 20.08 7.53 -92.71 -0.70 19.38 16 33 H 0.02 0.78 8.10 -2.39 -0.02 0.76 16 34 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.91 8.02 -2.39 -0.02 1.89 16 37 H 0.06 1.62 7.92 -2.39 -0.02 1.60 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.41 6.20 6.59 -92.71 -0.61 5.59 16 40 H 0.18 2.44 6.37 -2.91 -0.02 2.42 16 41 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 42 H 0.16 0.41 8.06 -2.91 -0.02 0.39 16 43 H 0.16 0.24 8.06 -2.91 -0.02 0.22 16 44 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 45 H 0.16 2.68 7.70 -2.91 -0.02 2.66 16 46 H 0.09 1.86 8.06 -2.38 -0.02 1.84 16 47 H 0.09 1.62 7.98 -2.39 -0.02 1.60 16 Total: -1.00 -74.63 389.04 1.18 -73.44 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.31 Total: 29.84 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 5.21 Total: -7.23 kcal Atomic # 7 Polarization: -121.95 SS G_CDS: -5.68 Total: -127.63 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.06 Total: -16.89 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -74.63 1.18 -73.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284217206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.566 kcal (2) G-P(sol) polarization free energy of solvation -74.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds