Wall clock time and date at job start Tue Mar 31 2020 22:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 119.99632 * 2 1 4 4 H 1.48504 * 109.46984 * 240.00196 * 3 2 1 5 5 H 1.48497 * 109.47567 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47082 * 120.00242 * 3 2 1 7 7 C 1.38817 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99662 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99809 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.46897 * 325.00153 * 10 9 7 12 12 C 1.52999 * 109.46982 * 205.00110 * 10 9 7 13 13 N 1.46503 * 109.47242 * 55.00179 * 12 10 9 14 14 C 1.34777 * 120.00049 * 179.97438 * 13 12 10 15 15 O 1.21285 * 119.99792 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99975 * 179.97438 * 14 13 12 17 17 C 1.50703 * 109.46898 * 180.02562 * 16 14 13 18 18 C 1.39376 * 119.48788 * 270.23027 * 17 16 14 19 19 C 1.36174 * 121.07953 * 180.28460 * 18 17 16 20 20 C 1.40366 * 119.51962 * 359.74983 * 19 18 17 21 21 C 1.40429 * 122.08240 * 179.97438 * 20 19 18 22 22 N 1.31250 * 119.88199 * 180.02562 * 21 20 19 23 23 C 1.32601 * 122.77601 * 0.02562 * 22 21 20 24 24 C 1.36173 * 121.88050 * 359.97438 * 23 22 21 25 25 C 1.40694 * 118.66342 * 359.97438 * 24 23 22 26 26 C 1.36213 * 119.48810 * 90.00238 * 17 16 14 27 27 C 1.53000 * 109.46599 * 85.00526 * 10 9 7 28 28 C 1.53001 * 117.50107 * 8.74334 * 27 10 9 29 29 C 1.53003 * 117.49868 * 300.08320 * 27 10 9 30 30 H 0.96994 * 120.00233 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00073 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47388 * 294.99988 * 12 10 9 33 33 H 1.09000 * 109.46707 * 175.00362 * 12 10 9 34 34 H 0.97001 * 120.00065 * 359.97438 * 13 12 10 35 35 H 1.08996 * 109.46615 * 60.00333 * 16 14 13 36 36 H 1.08994 * 109.46954 * 300.00626 * 16 14 13 37 37 H 1.07993 * 119.45846 * 0.02562 * 18 17 16 38 38 H 1.08005 * 120.23664 * 179.77004 * 19 18 17 39 39 H 1.08001 * 120.06195 * 0.02881 * 21 20 19 40 40 H 1.08004 * 119.06296 * 180.02562 * 23 22 21 41 41 H 1.07995 * 120.67106 * 179.97438 * 24 23 22 42 42 H 1.08002 * 120.26510 * 0.02562 * 26 17 16 43 43 H 1.09004 * 115.54795 * 154.42202 * 27 10 9 44 44 H 1.08994 * 117.49955 * 0.02562 * 28 27 10 45 45 H 1.08994 * 117.49346 * 145.02749 * 28 27 10 46 46 H 1.09001 * 117.50064 * 214.98643 * 29 27 10 47 47 H 1.09004 * 117.49736 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 1 2.9684 -3.5502 -0.5917 12 6 1.1806 -4.7519 -0.6111 13 7 0.7329 -4.3347 -1.9422 14 6 -0.0566 -5.1466 -2.6729 15 8 -0.3969 -6.2224 -2.2283 16 6 -0.5175 -4.7171 -4.0419 17 6 -1.3819 -5.7958 -4.6423 18 6 -0.7920 -6.8033 -5.4036 19 6 -1.5427 -7.7905 -5.9658 20 6 -2.9329 -7.7978 -5.7719 21 6 -3.7583 -8.7891 -6.3269 22 7 -5.0536 -8.7538 -6.1183 23 6 -5.6386 -7.8092 -5.3946 24 6 -4.9270 -6.8038 -4.8139 25 6 -3.5317 -6.7746 -4.9917 26 6 -2.7269 -5.7737 -4.4285 27 6 2.4230 -4.0362 1.4349 28 6 1.8152 -3.1997 2.5626 29 6 3.3011 -3.0611 2.2218 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 0.3135 -4.9202 0.0276 33 1 1.7555 -5.6743 -0.6936 34 1 1.0048 -3.4740 -2.2977 35 1 0.3494 -4.5482 -4.6807 36 1 -1.0928 -3.7951 -3.9589 37 1 0.2775 -6.7986 -5.5534 38 1 -1.0718 -8.5626 -6.5563 39 1 -3.3279 -9.5793 -6.9243 40 1 -6.7100 -7.8384 -5.2611 41 1 -5.4237 -6.0441 -4.2287 42 1 -3.1708 -4.9890 -3.8338 43 1 2.5645 -5.1014 1.6184 44 1 1.1551 -2.3794 2.2811 45 1 1.5572 -3.7144 3.4881 46 1 4.0199 -3.4847 2.9232 47 1 3.6192 -2.1495 1.7159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317018144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:36 Heat of formation + Delta-G solvation = 34.116225 kcal Electronic energy + Delta-G solvation = -28001.657391 eV Core-core repulsion = 24149.369010 eV Total energy + Delta-G solvation = -3852.288381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.80975 -40.71856 -39.21527 -38.31734 -35.85999 -35.02996 -34.06319 -33.59990 -32.55123 -30.76049 -30.14272 -28.63068 -25.61537 -24.93575 -24.43810 -23.52895 -23.12792 -22.88725 -21.41660 -20.51379 -19.23360 -18.75341 -18.16804 -17.90611 -17.58390 -16.96101 -16.69667 -16.33415 -16.17249 -15.86082 -15.44514 -15.38093 -15.20492 -14.99152 -14.81315 -14.47553 -14.38781 -14.36820 -13.73457 -13.55769 -13.03432 -12.92628 -12.83391 -12.75398 -12.70527 -12.58300 -12.57882 -12.14734 -11.96406 -11.95575 -11.57816 -11.16317 -11.06284 -11.00749 -10.78273 -10.61179 -10.47773 -9.96524 -9.87697 -9.00582 -8.97678 -7.87091 -5.14290 -0.57131 -0.09076 0.98304 1.50812 1.52642 1.56984 1.70388 1.99027 2.45794 2.59849 3.12549 3.15056 3.47885 3.49789 3.57559 3.63893 3.88194 3.89693 3.93438 3.98133 4.05226 4.11757 4.23818 4.29107 4.34664 4.37404 4.48432 4.53092 4.60168 4.62036 4.69487 4.71536 4.80914 4.87378 4.96135 4.96734 5.12733 5.14032 5.19429 5.27348 5.39420 5.43435 5.55195 5.59142 5.67627 5.68215 5.70901 5.90502 6.32928 6.65795 7.00476 7.31502 7.41746 8.12454 8.37989 9.34990 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.002264 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.294753 B =12362.277711 C =13118.308000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.065 4.065 3 Si 0.955 3.045 4 H -0.278 1.278 5 H -0.305 1.305 6 H -0.286 1.286 7 C -0.217 4.217 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.193 3.807 11 H 0.063 0.937 12 C 0.130 3.870 13 N -0.711 5.711 14 C 0.513 3.487 15 O -0.583 6.583 16 C -0.103 4.103 17 C -0.043 4.043 18 C -0.114 4.114 19 C -0.084 4.084 20 C -0.131 4.131 21 C 0.144 3.856 22 N -0.516 5.516 23 C 0.062 3.938 24 C -0.164 4.164 25 C -0.042 4.042 26 C -0.121 4.121 27 C -0.169 4.169 28 C -0.174 4.174 29 C -0.170 4.170 30 H 0.247 0.753 31 H 0.374 0.626 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.412 0.588 35 H 0.134 0.866 36 H 0.116 0.884 37 H 0.147 0.853 38 H 0.167 0.833 39 H 0.193 0.807 40 H 0.172 0.828 41 H 0.151 0.849 42 H 0.130 0.870 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.235 -14.519 -11.938 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.258 4.258 3 Si 0.786 3.214 4 H -0.204 1.204 5 H -0.232 1.232 6 H -0.213 1.213 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.359 5.359 10 C 0.084 3.916 11 H 0.080 0.920 12 C 0.005 3.995 13 N -0.362 5.362 14 C 0.300 3.700 15 O -0.464 6.464 16 C -0.143 4.143 17 C -0.045 4.045 18 C -0.132 4.132 19 C -0.103 4.103 20 C -0.133 4.133 21 C -0.027 4.027 22 N -0.225 5.225 23 C -0.080 4.080 24 C -0.183 4.183 25 C -0.047 4.047 26 C -0.139 4.139 27 C -0.190 4.190 28 C -0.212 4.212 29 C -0.207 4.207 30 H 0.056 0.944 31 H 0.206 0.794 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.249 0.751 35 H 0.152 0.848 36 H 0.134 0.866 37 H 0.164 0.836 38 H 0.184 0.816 39 H 0.210 0.790 40 H 0.189 0.811 41 H 0.169 0.831 42 H 0.148 0.852 43 H 0.131 0.869 44 H 0.096 0.904 45 H 0.107 0.893 46 H 0.119 0.881 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.986 -15.711 -11.925 19.824 hybrid contribution 0.402 2.487 0.851 2.659 sum -1.585 -13.223 -11.075 17.321 Atomic orbital electron populations 1.69780 1.06244 1.25577 1.59877 1.25281 0.95961 1.00122 1.04448 0.85487 0.77264 0.80695 0.77923 1.20445 1.23190 1.21282 1.19362 0.91062 0.84531 1.39907 0.90631 1.42512 1.05257 1.00221 1.87918 1.20126 0.94042 0.84847 0.92586 0.91950 1.21402 0.97821 0.97237 0.83059 1.45975 1.50737 1.21885 1.17603 1.20894 0.77624 0.83892 0.87568 1.90686 1.57931 1.24278 1.73503 1.20806 1.02001 0.98647 0.92825 1.19366 0.93429 0.95866 0.95817 1.21093 1.01388 0.93889 0.96826 1.21292 0.91356 0.98886 0.98790 1.19320 0.96235 0.97199 1.00555 1.23696 0.88359 0.95986 0.94632 1.67462 1.13392 1.25637 1.15975 1.22510 1.01493 0.90228 0.93764 1.22148 0.93167 1.01216 1.01789 1.18435 0.94517 0.95136 0.96661 1.20958 0.93825 0.98959 1.00161 1.23080 1.04919 0.96676 0.94296 1.22764 0.96832 1.03128 0.98450 1.22848 0.93314 1.01216 1.03357 0.94440 0.79354 0.93545 0.90428 0.75112 0.84758 0.86628 0.83554 0.81564 0.79020 0.81080 0.83147 0.85229 0.86863 0.90428 0.89305 0.88141 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.30 13.06 21.65 0.28 -54.01 16 2 C -0.07 -3.40 5.50 84.86 0.47 -2.94 16 3 Si 0.96 43.13 29.55 68.60 2.03 45.16 16 4 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.22 -10.37 8.16 84.03 0.69 -9.69 16 8 H 0.08 3.52 6.91 -2.91 -0.02 3.50 16 9 N -0.72 -30.57 3.08 -322.94 -0.99 -31.57 16 10 C 0.19 6.53 2.86 44.99 0.13 6.65 16 11 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 12 C 0.13 4.03 5.22 86.38 0.45 4.48 16 13 N -0.71 -20.86 5.39 -463.05 -2.49 -23.36 16 14 C 0.51 14.94 7.82 87.66 0.69 15.62 16 15 O -0.58 -21.31 16.03 -3.05 -0.05 -21.36 16 16 C -0.10 -2.20 5.80 29.10 0.17 -2.03 16 17 C -0.04 -0.99 4.34 -20.06 -0.09 -1.08 16 18 C -0.11 -2.23 9.58 22.06 0.21 -2.02 16 19 C -0.08 -1.48 9.81 22.31 0.22 -1.26 16 20 C -0.13 -2.83 5.74 -21.32 -0.12 -2.96 16 21 C 0.14 2.79 11.05 85.31 0.94 3.73 16 22 N -0.52 -11.67 10.30 -195.53 -2.01 -13.68 16 23 C 0.06 1.29 11.07 84.10 0.93 2.23 16 24 C -0.16 -3.55 9.88 22.39 0.22 -3.33 16 25 C -0.04 -1.04 5.75 -21.28 -0.12 -1.16 16 26 C -0.12 -3.00 9.42 22.28 0.21 -2.79 16 27 C -0.17 -5.35 5.71 -10.79 -0.06 -5.41 16 28 C -0.17 -6.23 9.74 30.62 0.30 -5.94 16 29 C -0.17 -5.59 9.87 30.62 0.30 -5.29 16 30 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 31 H 0.37 17.91 7.80 -92.71 -0.72 17.19 16 32 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.41 11.98 8.14 -92.71 -0.75 11.23 16 35 H 0.13 2.04 8.08 -2.39 -0.02 2.02 16 36 H 0.12 2.30 8.07 -2.39 -0.02 2.28 16 37 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.19 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 41 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 43 H 0.11 3.04 8.11 -2.39 -0.02 3.02 16 44 H 0.08 3.47 6.68 -2.39 -0.02 3.45 16 45 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 46 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 47 H 0.08 3.00 6.22 -2.38 -0.01 2.98 16 Total: -1.00 -66.47 393.34 1.81 -64.66 By element: Atomic # 1 Polarization: 47.79 SS G_CDS: -0.47 Total: 47.32 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 5.53 Total: -13.17 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -5.22 Total: -122.61 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.05 Total: -21.36 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -66.47 1.81 -64.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317018144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.775 kcal (2) G-P(sol) polarization free energy of solvation -66.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds