Wall clock time and date at job start Tue Mar 31 2020 22:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99474 * 2 1 4 4 H 1.48503 * 109.46956 * 240.00201 * 3 2 1 5 5 H 1.48501 * 109.47024 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47093 * 120.00295 * 3 2 1 7 7 C 1.38804 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00331 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00117 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00179 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47394 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.49496 * 55.06660 * 11 10 9 13 13 C 1.53042 * 109.49676 * 175.16204 * 11 10 9 14 14 C 1.53045 * 109.53512 * 181.32069 * 13 11 10 15 15 C 1.53621 * 109.24013 * 298.51104 * 14 13 11 16 16 N 1.46929 * 108.54531 * 54.85845 * 15 14 13 17 17 C 1.34771 * 120.63063 * 126.36921 * 16 15 14 18 18 O 1.21587 * 119.99893 * 185.42057 * 17 16 15 19 19 C 1.47564 * 120.00494 * 5.41652 * 17 16 15 20 20 C 1.38713 * 120.43209 * 54.14744 * 19 17 16 21 21 C 1.38996 * 120.75527 * 180.02562 * 20 19 17 22 22 C 1.36346 * 121.18921 * 359.92542 * 21 20 19 23 23 C 1.40352 * 119.92705 * 0.02562 * 22 21 20 24 24 C 1.40682 * 122.09589 * 180.02562 * 23 22 21 25 25 C 1.36263 * 118.66406 * 179.97438 * 24 23 22 26 26 N 1.32508 * 121.84276 * 359.97438 * 25 24 23 27 27 C 1.31318 * 122.71911 * 359.97438 * 26 25 24 28 28 C 1.40133 * 119.91936 * 0.02562 * 27 26 25 29 29 C 1.46925 * 118.73467 * 306.09309 * 16 15 14 30 30 H 0.96994 * 120.00510 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99953 * 359.97438 * 9 7 2 32 32 H 1.09011 * 109.47376 * 59.99509 * 10 9 7 33 33 H 1.09000 * 109.47494 * 299.99728 * 10 9 7 34 34 H 1.09005 * 109.46152 * 301.33550 * 13 11 10 35 35 H 1.08991 * 109.45949 * 61.31172 * 13 11 10 36 36 H 1.09004 * 109.49640 * 58.58303 * 14 13 11 37 37 H 1.08997 * 109.49536 * 178.64782 * 14 13 11 38 38 H 1.09002 * 109.73776 * 295.11643 * 15 14 13 39 39 H 1.09001 * 109.66255 * 174.55259 * 15 14 13 40 40 H 1.08006 * 119.62156 * 359.95505 * 20 19 17 41 41 H 1.08002 * 119.40629 * 179.97438 * 21 20 19 42 42 H 1.07994 * 120.03492 * 180.02562 * 22 21 20 43 43 H 1.07998 * 120.66857 * 359.96532 * 24 23 22 44 44 H 1.08006 * 119.07720 * 179.97438 * 25 24 23 45 45 H 1.08004 * 120.03870 * 180.02562 * 27 26 25 46 46 H 1.09000 * 109.58592 * 173.65154 * 29 16 15 47 47 H 1.09000 * 109.58572 * 293.92865 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6966 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 6 1.0641 -4.8197 0.0012 12 1 0.3802 -4.7141 -0.8410 13 6 1.8249 -6.1420 -0.1205 14 6 0.8294 -7.3041 -0.1531 15 6 0.0320 -7.3244 1.1598 16 7 -0.5867 -6.0056 1.3513 17 6 -1.9125 -5.8937 1.5661 18 8 -2.4281 -4.7942 1.6248 19 6 -2.7383 -7.1056 1.7301 20 6 -2.4053 -8.0595 2.6805 21 6 -3.1781 -9.2037 2.8402 22 6 -4.2833 -9.4222 2.0723 23 6 -4.6569 -8.4822 1.0993 24 6 -5.7882 -8.6611 0.2825 25 6 -6.0868 -7.7034 -0.6396 26 7 -5.3434 -6.6160 -0.7840 27 6 -4.2756 -6.3844 -0.0556 28 6 -3.8823 -7.3084 0.9218 29 6 0.2685 -4.8115 1.3102 30 1 -0.4850 0.8399 -0.0004 31 1 0.3558 -2.3881 0.0005 32 1 2.6851 -3.7144 0.8905 33 1 2.6849 -3.7145 -0.8894 34 1 2.4113 -6.1404 -1.0394 35 1 2.4904 -6.2581 0.7348 36 1 0.1476 -7.1755 -0.9938 37 1 1.3706 -8.2437 -0.2639 38 1 0.7007 -7.5389 1.9934 39 1 -0.7442 -8.0878 1.1056 40 1 -1.5348 -7.9120 3.3027 41 1 -2.8985 -9.9324 3.5867 42 1 -4.8706 -10.3176 2.2125 43 1 -6.4076 -9.5400 0.3842 44 1 -6.9536 -7.8342 -1.2705 45 1 -3.7011 -5.4828 -0.2097 46 1 -0.3517 -3.9163 1.3553 47 1 0.9543 -4.8240 2.1572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317162189.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:59 Heat of formation + Delta-G solvation = 32.000799 kcal Electronic energy + Delta-G solvation = -29203.133509 eV Core-core repulsion = 25350.753396 eV Total energy + Delta-G solvation = -3852.380113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.36120 -39.91214 -37.75503 -37.32845 -34.93035 -33.38820 -32.75472 -31.69200 -31.51669 -30.23045 -29.51517 -26.01462 -25.52849 -24.50276 -23.83934 -23.15807 -23.01304 -21.38779 -20.24208 -19.29051 -18.34771 -17.59422 -17.11253 -16.94337 -16.50010 -16.03255 -15.19993 -14.92736 -14.81398 -14.61457 -14.56292 -14.36107 -14.14054 -13.80891 -13.56873 -13.45886 -13.14732 -12.89800 -12.83519 -12.59683 -12.41648 -12.29863 -12.22874 -11.76441 -11.49948 -11.10681 -11.01271 -10.80795 -10.65182 -10.46239 -10.40388 -10.29052 -10.00355 -9.80412 -9.63133 -9.56701 -9.44311 -8.82302 -8.57627 -8.33790 -6.85848 -5.67872 -2.98045 -0.08999 0.58918 1.44453 2.51800 2.75338 3.00882 3.48880 3.52789 3.54712 3.79834 4.10572 4.24350 4.35505 4.45911 4.52367 4.61577 4.64546 4.73208 4.76691 4.87415 4.94653 5.00310 5.17636 5.24559 5.29978 5.38005 5.42682 5.44737 5.60297 5.63909 5.64797 5.72157 5.78975 5.83239 5.88188 5.94053 6.01104 6.09114 6.12684 6.20738 6.30690 6.38956 6.45549 6.53511 6.60418 6.78138 6.88922 7.38204 7.75406 7.80020 8.12205 8.49659 9.60545 10.18288 10.52484 11.54197 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014491 B = 0.002872 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.739568 B = 9748.503164 C =10817.100460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.069 0.931 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.075 0.925 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.102 3.898 16 N -0.601 5.601 17 C 0.552 3.448 18 O -0.514 6.514 19 C -0.081 4.081 20 C -0.089 4.089 21 C -0.101 4.101 22 C -0.098 4.098 23 C -0.025 4.025 24 C -0.162 4.162 25 C 0.080 3.920 26 N -0.484 5.484 27 C 0.160 3.840 28 C -0.084 4.084 29 C 0.119 3.881 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.019 0.981 33 H 0.022 0.978 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.154 0.846 45 H 0.170 0.830 46 H 0.106 0.894 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.528 -27.330 4.220 28.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.127 4.127 12 H 0.093 0.907 13 C -0.150 4.150 14 C -0.171 4.171 15 C -0.021 4.021 16 N -0.334 5.334 17 C 0.338 3.662 18 O -0.390 6.390 19 C -0.086 4.086 20 C -0.108 4.108 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.030 4.030 24 C -0.182 4.182 25 C -0.063 4.063 26 N -0.192 5.192 27 C -0.010 4.010 28 C -0.086 4.086 29 C -0.002 4.002 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.157 0.843 44 H 0.172 0.828 45 H 0.187 0.813 46 H 0.124 0.876 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.055 -26.062 3.573 27.236 hybrid contribution 0.443 0.226 0.691 0.851 sum -6.612 -25.836 4.263 27.007 Atomic orbital electron populations 1.69661 1.05026 1.25780 1.57205 1.24757 0.95490 0.97649 1.02946 0.86290 0.78505 0.83736 0.77750 1.21342 1.21701 1.21319 1.19144 0.90912 0.84186 1.43237 0.91316 1.42406 1.05954 0.99915 1.89509 1.20627 0.92930 0.85153 0.97998 1.21691 0.98009 0.95179 0.97803 0.90667 1.21529 0.97446 0.93688 1.02383 1.21983 0.98606 0.99197 0.97344 1.21974 0.97505 0.84500 0.98118 1.48131 1.06576 1.08442 1.70261 1.18201 0.81965 0.88478 0.77507 1.90913 1.71710 1.26929 1.49466 1.19966 0.95477 0.95226 0.97919 1.21373 0.99734 0.92594 0.97061 1.20895 0.94755 0.97179 0.99175 1.21097 0.97146 0.98578 0.94759 1.18112 0.94871 0.93798 0.96229 1.21891 0.97425 1.01383 0.97461 1.22318 0.98299 0.89371 0.96314 1.67564 1.05515 1.20831 1.25279 1.23491 0.91877 0.97257 0.88418 1.18770 0.95538 0.96053 0.98272 1.21806 0.93256 0.87697 0.97420 0.93405 0.78050 0.96279 0.96062 0.91439 0.91708 0.91476 0.90858 0.91106 0.89890 0.84760 0.84823 0.84763 0.84299 0.82847 0.81257 0.87594 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.09 13.06 55.49 0.72 -28.37 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.92 5.38 -59.91 -0.32 -19.24 16 10 C 0.16 3.21 5.65 -4.04 -0.02 3.18 16 11 C -0.11 -1.72 2.38 -90.50 -0.21 -1.93 16 12 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 13 C -0.11 -1.33 5.17 -26.69 -0.14 -1.46 16 14 C -0.13 -1.30 6.10 -26.39 -0.16 -1.46 16 15 C 0.10 0.99 5.60 -3.49 -0.02 0.97 16 16 N -0.60 -8.19 2.97 -173.72 -0.52 -8.71 16 17 C 0.55 8.48 6.48 -12.46 -0.08 8.40 16 18 O -0.51 -10.25 15.19 5.29 0.08 -10.17 16 19 C -0.08 -1.00 4.63 -104.66 -0.48 -1.48 16 20 C -0.09 -0.80 7.75 -39.13 -0.30 -1.10 16 21 C -0.10 -0.70 9.93 -39.98 -0.40 -1.10 16 22 C -0.10 -0.73 9.79 -39.47 -0.39 -1.11 16 23 C -0.02 -0.25 5.74 -106.84 -0.61 -0.87 16 24 C -0.16 -1.45 9.88 -39.37 -0.39 -1.84 16 25 C 0.08 0.85 11.07 -17.97 -0.20 0.65 16 26 N -0.48 -6.83 10.30 -13.21 -0.14 -6.96 16 27 C 0.16 2.34 10.49 -17.06 -0.18 2.17 16 28 C -0.08 -1.07 5.76 -106.59 -0.61 -1.69 16 29 C 0.12 1.95 5.52 -3.71 -0.02 1.93 16 30 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 31 H 0.39 10.65 6.89 -40.82 -0.28 10.37 16 32 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.70 5.38 -51.93 -0.28 0.43 16 40 H 0.13 0.99 7.74 -52.48 -0.41 0.58 16 41 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 42 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 43 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 45 H 0.17 2.74 6.50 -52.48 -0.34 2.40 16 46 H 0.11 2.18 6.20 -51.93 -0.32 1.86 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -35.28 379.57 -10.61 -45.90 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.67 Total: 8.22 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -4.47 Total: -4.30 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -0.25 Total: -63.29 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.28 -10.61 -45.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317162189.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.897 kcal (2) G-P(sol) polarization free energy of solvation -35.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds