Wall clock time and date at job start Tue Mar 31 2020 23:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99314 * 2 1 4 4 H 1.48494 * 109.47035 * 269.99853 * 3 2 1 5 5 H 1.48498 * 109.47248 * 29.99857 * 3 2 1 6 6 H 1.48505 * 109.46808 * 149.99850 * 3 2 1 7 7 C 1.38802 * 120.00520 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00108 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00009 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99800 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47133 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.91364 * 302.55368 * 11 10 9 13 13 C 1.55160 * 111.00429 * 66.45240 * 11 10 9 14 14 C 1.54318 * 102.94235 * 153.57726 * 13 11 10 15 15 N 1.47027 * 107.27319 * 337.81053 * 14 13 11 16 16 C 1.34769 * 125.65076 * 178.90453 * 15 14 13 17 17 O 1.21275 * 120.00145 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.00045 * 0.02562 * 16 15 14 19 19 C 1.50698 * 109.47473 * 179.97438 * 18 16 15 20 20 C 1.36204 * 120.66823 * 265.00067 * 19 18 16 21 21 N 1.32582 * 121.87857 * 180.02562 * 20 19 18 22 22 C 1.31266 * 122.77521 * 359.97438 * 21 20 19 23 23 C 1.40396 * 119.87886 * 0.02562 * 22 21 20 24 24 C 1.40379 * 122.07257 * 180.02562 * 23 22 21 25 25 C 1.36168 * 119.51542 * 179.97438 * 24 23 22 26 26 C 1.39376 * 121.08704 * 359.74965 * 25 24 23 27 27 C 1.36213 * 121.02772 * 0.51624 * 26 25 24 28 28 C 1.40242 * 119.47846 * 359.49038 * 27 26 25 29 29 C 1.47422 * 108.70020 * 359.16592 * 15 14 13 30 30 H 0.96998 * 120.00916 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99886 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47583 * 59.99951 * 10 9 7 33 33 H 1.09007 * 109.47412 * 299.99817 * 10 9 7 34 34 H 1.09002 * 110.71797 * 35.21404 * 13 11 10 35 35 H 1.09004 * 110.71858 * 271.94444 * 13 11 10 36 36 H 1.08997 * 109.88268 * 218.39082 * 14 13 11 37 37 H 1.09006 * 109.88393 * 97.22101 * 14 13 11 38 38 H 1.08998 * 109.47457 * 59.99825 * 18 16 15 39 39 H 1.09005 * 109.46977 * 299.99935 * 18 16 15 40 40 H 1.08001 * 119.06176 * 0.02562 * 20 19 18 41 41 H 1.07991 * 120.05759 * 180.02562 * 22 21 20 42 42 H 1.08005 * 120.24127 * 359.97438 * 24 23 22 43 43 H 1.07998 * 119.45698 * 180.02562 * 25 24 23 44 44 H 1.08000 * 119.49083 * 180.28408 * 26 25 24 45 45 H 1.08002 * 120.26510 * 179.77103 * 27 26 25 46 46 H 1.08997 * 110.37082 * 142.74433 * 29 15 14 47 47 H 1.09008 * 110.36881 * 265.06591 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4474 2.6528 0.7000 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0014 9 7 3.3797 -1.2019 0.0000 10 6 4.1123 -2.4705 0.0000 11 6 5.6166 -2.1909 0.0013 12 1 5.8996 -1.5807 -0.8564 13 6 6.0565 -1.5209 1.3298 14 6 7.5383 -1.9345 1.4514 15 7 7.7227 -3.1428 0.6341 16 6 8.8841 -3.8039 0.4605 17 8 8.9197 -4.7937 -0.2394 18 6 10.1387 -3.3133 1.1361 19 6 11.2878 -4.2220 0.7828 20 6 11.6401 -5.2486 1.6056 21 7 12.6469 -6.0621 1.3186 22 6 13.3713 -5.9399 0.2308 23 6 13.0907 -4.9132 -0.6847 24 6 13.8352 -4.7404 -1.8622 25 6 13.5173 -3.7269 -2.7142 26 6 12.4610 -2.8601 -2.4392 27 6 11.7203 -2.9940 -1.3040 28 6 12.0185 -4.0266 -0.4031 29 6 6.4279 -3.5076 0.0310 30 1 -0.4851 0.8400 -0.0004 31 1 3.8646 -0.3618 0.0004 32 1 3.8494 -3.0420 -0.8902 33 1 3.8487 -3.0424 0.8898 34 1 5.4777 -1.9093 2.1678 35 1 5.9628 -0.4368 1.2645 36 1 7.7785 -2.1508 2.4923 37 1 8.1783 -1.1344 1.0795 38 1 9.9940 -3.3145 2.2164 39 1 10.3597 -2.3001 0.8003 40 1 11.0834 -5.4045 2.5178 41 1 14.1816 -6.6279 0.0405 42 1 14.6540 -5.4066 -2.0908 43 1 14.0904 -3.5951 -3.6201 44 1 12.2285 -2.0677 -3.1352 45 1 10.9067 -2.3131 -1.1014 46 1 6.5739 -3.8866 -0.9805 47 1 5.9189 -4.2503 0.6455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317326130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:05 Heat of formation + Delta-G solvation = 34.281282 kcal Electronic energy + Delta-G solvation = -28185.471512 eV Core-core repulsion = 24333.190288 eV Total energy + Delta-G solvation = -3852.281223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.35912 -40.06150 -37.91616 -37.57896 -34.91866 -34.46505 -32.36483 -31.53432 -30.88820 -30.45259 -29.42721 -28.25629 -25.57676 -24.26315 -23.86962 -23.20234 -22.19721 -21.61302 -20.26576 -19.30385 -18.31264 -17.92017 -17.70500 -17.26030 -16.78667 -16.26808 -15.54080 -15.23685 -14.91233 -14.70989 -14.49801 -14.28745 -14.06024 -13.86410 -13.82764 -13.56098 -13.25830 -13.09924 -12.84763 -12.79788 -12.51252 -12.44364 -12.25185 -12.06659 -11.86044 -11.65510 -11.40721 -11.00170 -10.75280 -10.68328 -10.56347 -10.45819 -10.18272 -9.95743 -9.76335 -9.63374 -9.38740 -8.95110 -8.77005 -8.35072 -7.28742 -5.80783 -3.17073 0.01678 0.60245 1.56444 2.45144 2.69746 2.87235 3.31088 3.34485 3.40893 3.75201 3.98299 4.19591 4.30539 4.34613 4.38760 4.53394 4.54035 4.56113 4.61217 4.72390 4.76664 4.85350 4.88324 4.95068 5.11599 5.12812 5.23033 5.31983 5.41235 5.45561 5.50280 5.52286 5.67182 5.70245 5.72381 5.75299 5.82273 5.87514 6.03767 6.04333 6.11086 6.11821 6.25267 6.30064 6.49213 6.57489 6.67079 7.35938 7.67613 7.94822 7.99419 8.37824 9.16453 9.88386 10.07862 11.37534 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021923 B = 0.002107 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.878179 B =13284.804507 C =13828.239418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.754 5.754 10 C 0.169 3.831 11 C -0.110 4.110 12 H 0.083 0.917 13 C -0.124 4.124 14 C 0.097 3.903 15 N -0.617 5.617 16 C 0.528 3.472 17 O -0.532 6.532 18 C -0.095 4.095 19 C -0.098 4.098 20 C 0.089 3.911 21 N -0.485 5.485 22 C 0.143 3.857 23 C -0.112 4.112 24 C -0.087 4.087 25 C -0.121 4.121 26 C -0.097 4.097 27 C -0.109 4.109 28 C -0.007 4.007 29 C 0.114 3.886 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.031 0.969 33 H 0.031 0.969 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.151 0.849 41 H 0.163 0.837 42 H 0.133 0.867 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.078 0.922 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.354 -5.952 0.538 31.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.400 5.400 10 C 0.041 3.959 11 C -0.130 4.130 12 H 0.102 0.898 13 C -0.162 4.162 14 C -0.026 4.026 15 N -0.352 5.352 16 C 0.316 3.684 17 O -0.408 6.408 18 C -0.136 4.136 19 C -0.100 4.100 20 C -0.055 4.055 21 N -0.192 5.192 22 C -0.029 4.029 23 C -0.114 4.114 24 C -0.107 4.107 25 C -0.139 4.139 26 C -0.116 4.116 27 C -0.127 4.127 28 C -0.012 4.012 29 C -0.008 4.008 30 H 0.070 0.930 31 H 0.193 0.807 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.168 0.832 41 H 0.180 0.820 42 H 0.151 0.849 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.097 0.903 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 31.278 -7.251 0.854 32.119 hybrid contribution 0.167 2.056 -0.597 2.148 sum 31.445 -5.195 0.257 31.872 Atomic orbital electron populations 1.69697 1.05105 1.25855 1.57452 1.24685 0.95250 0.97230 1.02038 0.86535 0.79128 0.84992 0.77742 1.21119 1.21728 1.20362 1.19051 0.80544 0.94783 1.43092 0.89179 1.42645 1.04023 1.02053 1.91258 1.20520 0.86751 0.89540 0.99082 1.22583 0.96856 0.95544 0.97993 0.89842 1.22680 0.93013 1.01767 0.98730 1.22166 0.98624 0.86725 0.95037 1.48549 1.08645 1.28711 1.49289 1.20036 0.83315 0.83393 0.81630 1.90748 1.85239 1.25668 1.39194 1.20568 0.90506 0.99832 1.02676 1.19996 0.96644 0.98219 0.95139 1.22012 0.93788 0.90337 0.99325 1.67426 1.05822 1.26424 1.19479 1.23184 0.96855 0.94344 0.88488 1.19008 0.97359 0.97703 0.97318 1.20981 0.98887 0.97913 0.92905 1.20933 0.97700 0.95413 0.99826 1.21005 0.94849 0.98948 0.96801 1.20953 0.99736 0.97570 0.94408 1.17951 0.94190 0.94982 0.94104 1.22198 0.82254 0.97266 0.99125 0.93018 0.80672 0.95094 0.95110 0.89779 0.89854 0.91240 0.91472 0.87386 0.87705 0.83167 0.81995 0.84902 0.85528 0.85509 0.85531 0.90330 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.96 13.97 55.49 0.78 -28.19 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 3 Si 0.89 21.44 27.74 -169.99 -4.71 16.72 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.15 6.52 56.52 0.37 -5.78 16 7 C -0.24 -6.78 10.47 -15.06 -0.16 -6.94 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -17.05 5.26 -59.91 -0.32 -17.37 16 10 C 0.17 3.04 5.71 -4.04 -0.02 3.02 16 11 C -0.11 -1.52 3.09 -88.59 -0.27 -1.80 16 12 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.12 -1.47 6.13 -24.90 -0.15 -1.63 16 14 C 0.10 0.90 6.49 -3.06 -0.02 0.88 16 15 N -0.62 -7.16 3.33 -170.66 -0.57 -7.73 16 16 C 0.53 6.51 7.84 -10.99 -0.09 6.42 16 17 O -0.53 -8.79 16.29 5.56 0.09 -8.70 16 18 C -0.10 -0.83 4.50 -29.04 -0.13 -0.96 16 19 C -0.10 -1.04 4.40 -104.44 -0.46 -1.49 16 20 C 0.09 0.96 10.72 -17.96 -0.19 0.77 16 21 N -0.48 -5.53 10.30 -13.16 -0.14 -5.66 16 22 C 0.14 1.35 11.05 -16.98 -0.19 1.16 16 23 C -0.11 -1.10 5.74 -106.86 -0.61 -1.71 16 24 C -0.09 -0.65 9.81 -39.52 -0.39 -1.04 16 25 C -0.12 -0.86 9.94 -39.90 -0.40 -1.26 16 26 C -0.10 -0.78 9.95 -39.89 -0.40 -1.17 16 27 C -0.11 -1.04 9.33 -39.56 -0.37 -1.41 16 28 C -0.01 -0.08 5.75 -106.81 -0.61 -0.69 16 29 C 0.11 1.48 6.37 -2.65 -0.02 1.47 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.36 7.85 5.40 -40.82 -0.22 7.63 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.03 0.56 8.11 -51.93 -0.42 0.14 16 34 H 0.08 1.05 8.01 -51.93 -0.42 0.64 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.11 0.68 8.06 -51.93 -0.42 0.26 16 39 H 0.10 0.71 6.84 -51.93 -0.35 0.36 16 40 H 0.15 1.33 8.05 -52.49 -0.42 0.91 16 41 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 43 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 44 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.13 1.09 6.65 -52.49 -0.35 0.74 16 46 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 47 H 0.07 0.95 8.03 -51.92 -0.42 0.53 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -35.69 386.89 -10.44 -46.14 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.83 Total: 5.32 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -4.57 Total: -6.36 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -0.24 Total: -58.94 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.72 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.69 -10.44 -46.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317326130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.418 kcal (2) G-P(sol) polarization free energy of solvation -35.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds