Wall clock time and date at job start Tue Mar 31 2020 22:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00018 * 2 1 4 4 H 1.48503 * 109.46971 * 271.93828 * 3 2 1 5 5 H 1.48504 * 109.47372 * 31.93721 * 3 2 1 6 6 H 1.48495 * 109.47251 * 151.93759 * 3 2 1 7 7 C 1.38811 * 120.00155 * 179.72019 * 2 1 3 8 8 H 1.08009 * 119.99822 * 343.75994 * 7 2 1 9 9 N 1.36936 * 120.00038 * 163.75608 * 7 2 1 10 10 C 1.47419 * 125.64773 * 324.58184 * 9 7 2 11 11 C 1.54914 * 104.82799 * 155.83653 * 10 9 7 12 12 C 1.55158 * 101.58365 * 37.01229 * 11 10 9 13 13 C 1.47028 * 125.64669 * 144.27864 * 9 7 2 14 14 H 1.09003 * 109.87537 * 300.50817 * 13 9 7 15 15 C 1.52995 * 109.88294 * 61.67348 * 13 9 7 16 16 N 1.46496 * 109.47555 * 298.26755 * 15 13 9 17 17 C 1.34770 * 120.00159 * 173.05638 * 16 15 13 18 18 O 1.21284 * 120.00179 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00268 * 180.02562 * 17 16 15 20 20 C 1.50702 * 109.47691 * 179.97438 * 19 17 16 21 21 C 1.36100 * 120.12712 * 264.73105 * 20 19 17 22 22 C 1.39323 * 121.06874 * 179.67638 * 21 20 19 23 23 C 1.36176 * 120.86317 * 0.64526 * 22 21 20 24 24 C 1.40395 * 119.61423 * 359.65772 * 23 22 21 25 25 C 1.40770 * 121.37822 * 180.02562 * 24 23 22 26 26 C 1.36577 * 118.15158 * 179.97438 * 25 24 23 27 27 C 1.39331 * 119.93535 * 359.97438 * 26 25 24 28 28 N 1.31082 * 121.75873 * 359.97438 * 27 26 25 29 29 C 1.33691 * 121.31648 * 0.02562 * 28 27 26 30 30 H 0.97001 * 120.00514 * 0.28019 * 1 2 3 31 31 H 1.08998 * 110.36710 * 274.66891 * 10 9 7 32 32 H 1.08994 * 110.37199 * 36.88632 * 10 9 7 33 33 H 1.09005 * 111.00136 * 155.08487 * 11 10 9 34 34 H 1.08996 * 111.00505 * 278.93249 * 11 10 9 35 35 H 1.08992 * 110.71959 * 82.86090 * 12 11 10 36 36 H 1.08999 * 110.71250 * 206.13773 * 12 11 10 37 37 H 1.08998 * 109.47185 * 58.27471 * 15 13 9 38 38 H 1.09006 * 109.46627 * 178.26728 * 15 13 9 39 39 H 0.97004 * 119.99979 * 353.06102 * 16 15 13 40 40 H 1.08997 * 109.47419 * 300.00155 * 19 17 16 41 41 H 1.09005 * 109.46848 * 60.00079 * 19 17 16 42 42 H 1.07999 * 119.47070 * 0.02562 * 21 20 19 43 43 H 1.07997 * 119.57060 * 180.30005 * 22 21 20 44 44 H 1.08001 * 120.19306 * 179.68235 * 23 22 21 45 45 H 1.08001 * 120.92504 * 0.02562 * 25 24 23 46 46 H 1.08001 * 120.03170 * 180.02562 * 26 25 24 47 47 H 1.08001 * 119.12264 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4566 2.0700 -1.3993 5 1 1.4687 2.6405 0.7406 6 1 3.5676 1.4287 0.6586 7 6 2.0102 -1.2021 0.0059 8 1 1.5025 -2.1175 0.2719 9 7 3.3386 -1.2274 -0.3257 10 6 3.9870 -0.3777 -1.3411 11 6 5.4763 -0.3213 -0.9185 12 6 5.7051 -1.7622 -0.3904 13 6 4.3556 -2.1020 0.2764 14 1 4.4136 -1.9188 1.3493 15 6 4.0029 -3.5674 0.0139 16 7 2.7153 -3.8794 0.6391 17 6 2.1332 -5.0755 0.4224 18 8 2.6756 -5.8937 -0.2898 19 6 0.8084 -5.3963 1.0650 20 6 0.3790 -6.7843 0.6652 21 6 -0.4642 -6.9616 -0.3884 22 6 -0.8685 -8.2364 -0.7791 23 6 -0.4405 -9.3413 -0.1081 24 6 0.4252 -9.1956 0.9876 25 6 0.8908 -10.3122 1.7074 26 6 1.7311 -10.0944 2.7618 27 6 2.1039 -8.7944 3.0968 28 7 1.6693 -7.7569 2.4238 29 6 0.8447 -7.9006 1.3813 30 1 -0.4851 0.8400 -0.0041 31 1 3.8899 -0.8267 -2.3296 32 1 3.5510 0.6212 -1.3345 33 1 6.1177 -0.1126 -1.7748 34 1 5.6307 0.4135 -0.1285 35 1 5.9158 -2.4455 -1.2130 36 1 6.5107 -1.7804 0.3436 37 1 3.9361 -3.7383 -1.0605 38 1 4.7768 -4.2085 0.4363 39 1 2.2816 -3.2251 1.2090 40 1 0.9085 -5.3447 2.1492 41 1 0.0603 -4.6756 0.7345 42 1 -0.8213 -6.1006 -0.9339 43 1 -1.5344 -8.3493 -1.6218 44 1 -0.7648 -10.3240 -0.4172 45 1 0.5925 -11.3132 1.4329 46 1 2.1070 -10.9292 3.3348 47 1 2.7687 -8.6373 3.9333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317506111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:41 Heat of formation + Delta-G solvation = 48.784343 kcal Electronic energy + Delta-G solvation = -29106.278689 eV Core-core repulsion = 25254.626366 eV Total energy + Delta-G solvation = -3851.652324 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.90074 -39.13683 -37.87631 -37.02308 -34.10909 -33.76181 -32.67371 -31.35039 -30.52796 -29.98566 -29.49427 -27.35451 -24.87207 -24.20410 -23.60517 -23.53016 -21.38139 -20.77863 -19.79935 -19.31059 -18.26372 -17.30898 -16.93161 -16.74117 -16.23253 -15.99953 -15.21385 -14.99561 -14.64579 -14.47787 -14.24678 -14.11385 -13.85474 -13.55644 -13.13919 -13.01983 -12.97440 -12.82478 -12.54550 -12.37889 -11.93632 -11.70015 -11.66755 -11.53158 -11.33378 -11.28545 -11.14260 -10.86455 -10.67469 -10.48193 -10.45445 -10.19467 -9.83744 -9.54624 -9.45330 -9.23546 -8.74383 -8.61392 -8.24133 -8.11690 -6.86096 -6.04446 -3.49164 0.39879 0.84934 1.99705 2.95022 3.28373 3.32427 3.42516 3.47467 3.87078 4.20393 4.34308 4.47721 4.50753 4.68281 4.80126 4.86509 4.93144 5.07707 5.13634 5.14892 5.33775 5.34971 5.35852 5.45414 5.48516 5.54368 5.60853 5.81980 5.85432 5.88648 5.94206 5.97705 6.04624 6.12595 6.13820 6.16729 6.27008 6.36177 6.40054 6.42588 6.49565 6.56073 6.57159 6.84495 6.88754 6.89995 7.19267 7.84186 7.95566 8.24194 8.29071 8.75266 8.92879 9.59895 10.19537 11.09802 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016442 B = 0.002914 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.558700 B = 9606.164973 C =10417.953106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.034 3.966 3 Si 0.893 3.107 4 H -0.288 1.288 5 H -0.305 1.305 6 H -0.269 1.269 7 C -0.255 4.255 8 H 0.093 0.907 9 N -0.602 5.602 10 C 0.117 3.883 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.143 3.857 14 H 0.048 0.952 15 C 0.119 3.881 16 N -0.709 5.709 17 C 0.522 3.478 18 O -0.558 6.558 19 C -0.101 4.101 20 C -0.025 4.025 21 C -0.096 4.096 22 C -0.105 4.105 23 C -0.109 4.109 24 C -0.102 4.102 25 C -0.061 4.061 26 C -0.180 4.180 27 C 0.124 3.876 28 N -0.462 5.462 29 C 0.142 3.858 30 H 0.264 0.736 31 H 0.031 0.969 32 H 0.041 0.959 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.413 0.587 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.758 -16.584 3.702 17.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.167 4.167 3 Si 0.725 3.275 4 H -0.216 1.216 5 H -0.233 1.233 6 H -0.195 1.195 7 C -0.383 4.383 8 H 0.110 0.890 9 N -0.328 5.328 10 C -0.008 4.008 11 C -0.174 4.174 12 C -0.160 4.160 13 C 0.036 3.964 14 H 0.066 0.934 15 C -0.007 4.007 16 N -0.363 5.363 17 C 0.309 3.691 18 O -0.437 6.437 19 C -0.141 4.141 20 C -0.026 4.026 21 C -0.116 4.116 22 C -0.123 4.123 23 C -0.128 4.128 24 C -0.104 4.104 25 C -0.087 4.087 26 C -0.200 4.200 27 C -0.049 4.049 28 N -0.170 5.170 29 C 0.020 3.980 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.252 0.748 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.153 0.847 46 H 0.152 0.848 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.095 -16.125 3.403 16.768 hybrid contribution -0.047 0.452 -0.102 0.466 sum 3.048 -15.673 3.300 16.304 Atomic orbital electron populations 1.69776 1.05745 1.26861 1.52129 1.25420 0.95193 0.97953 0.98146 0.86682 0.79887 0.83975 0.76992 1.21579 1.23303 1.19464 1.18696 0.81769 0.93986 1.43876 0.89000 1.44683 1.04751 1.43686 1.39687 1.21903 0.90783 0.95184 0.92908 1.22779 0.97525 0.96739 1.00392 1.22490 0.96516 0.96919 1.00048 1.21287 0.88889 0.89540 0.96660 0.93406 1.21845 0.84212 0.96644 0.97966 1.46215 1.22903 1.16393 1.50742 1.20188 0.86214 0.81767 0.80981 1.90633 1.65465 1.48246 1.39352 1.20583 0.96502 0.93781 1.03223 1.19035 0.95554 0.93262 0.94735 1.20874 0.97115 0.97952 0.95646 1.20892 0.99597 0.92277 0.99552 1.20898 0.97612 0.99118 0.95154 1.18790 0.99826 0.93903 0.97844 1.21408 0.95112 0.98173 0.93996 1.21836 1.00228 0.98774 0.99129 1.22925 0.96401 0.88101 0.97434 1.67995 1.09123 1.34043 1.05804 1.18634 0.94475 0.91670 0.93205 0.92573 0.95145 0.94104 0.91584 0.91605 0.91276 0.91452 0.91977 0.93238 0.74776 0.87394 0.87498 0.84966 0.85475 0.85529 0.84716 0.84849 0.82683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 13.97 55.49 0.78 -25.52 16 2 C 0.03 0.93 5.46 -17.43 -0.10 0.83 16 3 Si 0.89 21.93 24.79 -169.99 -4.21 17.72 16 4 H -0.29 -7.01 6.77 56.52 0.38 -6.63 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.27 -6.43 7.06 56.52 0.40 -6.03 16 7 C -0.26 -6.64 9.49 -15.06 -0.14 -6.79 16 8 H 0.09 2.43 5.35 -52.48 -0.28 2.15 16 9 N -0.60 -13.67 2.69 -162.58 -0.44 -14.11 16 10 C 0.12 2.46 6.22 -2.53 -0.02 2.44 16 11 C -0.14 -2.28 7.08 -24.58 -0.17 -2.46 16 12 C -0.12 -1.89 6.47 -24.90 -0.16 -2.05 16 13 C 0.14 2.70 3.34 -66.96 -0.22 2.48 16 14 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 15 C 0.12 2.25 5.19 -4.05 -0.02 2.23 16 16 N -0.71 -13.71 4.36 -60.30 -0.26 -13.98 16 17 C 0.52 10.22 7.82 -10.99 -0.09 10.14 16 18 O -0.56 -12.54 16.01 5.55 0.09 -12.45 16 19 C -0.10 -1.68 5.56 -29.03 -0.16 -1.84 16 20 C -0.02 -0.40 4.38 -104.51 -0.46 -0.86 16 21 C -0.10 -1.37 9.56 -39.95 -0.38 -1.76 16 22 C -0.11 -1.26 9.96 -39.92 -0.40 -1.66 16 23 C -0.11 -1.25 9.78 -39.51 -0.39 -1.64 16 24 C -0.10 -1.36 5.74 -106.80 -0.61 -1.97 16 25 C -0.06 -0.64 9.90 -39.22 -0.39 -1.02 16 26 C -0.18 -1.76 10.03 -39.77 -0.40 -2.16 16 27 C 0.12 1.48 11.14 -17.47 -0.19 1.29 16 28 N -0.46 -7.18 9.51 -10.97 -0.10 -7.28 16 29 C 0.14 2.25 6.58 -84.86 -0.56 1.69 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.04 0.94 3.03 -51.93 -0.16 0.78 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.01 7.86 -51.93 -0.41 0.61 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.29 8.11 -51.93 -0.42 0.86 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.41 8.08 6.07 -40.82 -0.25 7.83 16 40 H 0.11 1.68 7.72 -51.93 -0.40 1.28 16 41 H 0.11 1.69 8.03 -51.93 -0.42 1.27 16 42 H 0.13 1.76 8.04 -52.49 -0.42 1.33 16 43 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 45 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 46 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 377.61 15.07 5.69 5.69 Total: -1.00 -33.77 377.61 -9.89 -43.65 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.56 Total: 9.37 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -4.86 Total: -3.10 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: -0.03 Total: -60.88 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.21 Total: 17.72 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.77 -9.89 -43.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317506111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.437 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds