Wall clock time and date at job start Tue Mar 31 2020 22:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00018 * 2 1 4 4 H 1.48503 * 109.46971 * 271.93828 * 3 2 1 5 5 H 1.48504 * 109.47372 * 31.93721 * 3 2 1 6 6 H 1.48495 * 109.47251 * 151.93759 * 3 2 1 7 7 C 1.38811 * 120.00155 * 179.72019 * 2 1 3 8 8 H 1.08009 * 119.99822 * 343.75994 * 7 2 1 9 9 N 1.36936 * 120.00038 * 163.75608 * 7 2 1 10 10 C 1.47419 * 125.64773 * 324.58184 * 9 7 2 11 11 C 1.54914 * 104.82799 * 155.83653 * 10 9 7 12 12 C 1.55158 * 101.58365 * 37.01229 * 11 10 9 13 13 C 1.47028 * 125.64669 * 144.27864 * 9 7 2 14 14 H 1.09003 * 109.87537 * 300.50817 * 13 9 7 15 15 C 1.52995 * 109.88294 * 61.67348 * 13 9 7 16 16 N 1.46496 * 109.47555 * 298.26755 * 15 13 9 17 17 C 1.34770 * 120.00159 * 173.05638 * 16 15 13 18 18 O 1.21284 * 120.00179 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00268 * 180.02562 * 17 16 15 20 20 C 1.50702 * 109.47691 * 179.97438 * 19 17 16 21 21 C 1.36100 * 120.12712 * 264.73105 * 20 19 17 22 22 C 1.39323 * 121.06874 * 179.67638 * 21 20 19 23 23 C 1.36176 * 120.86317 * 0.64526 * 22 21 20 24 24 C 1.40395 * 119.61423 * 359.65772 * 23 22 21 25 25 C 1.40770 * 121.37822 * 180.02562 * 24 23 22 26 26 C 1.36577 * 118.15158 * 179.97438 * 25 24 23 27 27 C 1.39331 * 119.93535 * 359.97438 * 26 25 24 28 28 N 1.31082 * 121.75873 * 359.97438 * 27 26 25 29 29 C 1.33691 * 121.31648 * 0.02562 * 28 27 26 30 30 H 0.97001 * 120.00514 * 0.28019 * 1 2 3 31 31 H 1.08998 * 110.36710 * 274.66891 * 10 9 7 32 32 H 1.08994 * 110.37199 * 36.88632 * 10 9 7 33 33 H 1.09005 * 111.00136 * 155.08487 * 11 10 9 34 34 H 1.08996 * 111.00505 * 278.93249 * 11 10 9 35 35 H 1.08992 * 110.71959 * 82.86090 * 12 11 10 36 36 H 1.08999 * 110.71250 * 206.13773 * 12 11 10 37 37 H 1.08998 * 109.47185 * 58.27471 * 15 13 9 38 38 H 1.09006 * 109.46627 * 178.26728 * 15 13 9 39 39 H 0.97004 * 119.99979 * 353.06102 * 16 15 13 40 40 H 1.08997 * 109.47419 * 300.00155 * 19 17 16 41 41 H 1.09005 * 109.46848 * 60.00079 * 19 17 16 42 42 H 1.07999 * 119.47070 * 0.02562 * 21 20 19 43 43 H 1.07997 * 119.57060 * 180.30005 * 22 21 20 44 44 H 1.08001 * 120.19306 * 179.68235 * 23 22 21 45 45 H 1.08001 * 120.92504 * 0.02562 * 25 24 23 46 46 H 1.08001 * 120.03170 * 180.02562 * 26 25 24 47 47 H 1.08001 * 119.12264 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4566 2.0700 -1.3993 5 1 1.4687 2.6405 0.7406 6 1 3.5676 1.4287 0.6586 7 6 2.0102 -1.2021 0.0059 8 1 1.5025 -2.1175 0.2719 9 7 3.3386 -1.2274 -0.3257 10 6 3.9870 -0.3777 -1.3411 11 6 5.4763 -0.3213 -0.9185 12 6 5.7051 -1.7622 -0.3904 13 6 4.3556 -2.1020 0.2764 14 1 4.4136 -1.9188 1.3493 15 6 4.0029 -3.5674 0.0139 16 7 2.7153 -3.8794 0.6391 17 6 2.1332 -5.0755 0.4224 18 8 2.6756 -5.8937 -0.2898 19 6 0.8084 -5.3963 1.0650 20 6 0.3790 -6.7843 0.6652 21 6 -0.4642 -6.9616 -0.3884 22 6 -0.8685 -8.2364 -0.7791 23 6 -0.4405 -9.3413 -0.1081 24 6 0.4252 -9.1956 0.9876 25 6 0.8908 -10.3122 1.7074 26 6 1.7311 -10.0944 2.7618 27 6 2.1039 -8.7944 3.0968 28 7 1.6693 -7.7569 2.4238 29 6 0.8447 -7.9006 1.3813 30 1 -0.4851 0.8400 -0.0041 31 1 3.8899 -0.8267 -2.3296 32 1 3.5510 0.6212 -1.3345 33 1 6.1177 -0.1126 -1.7748 34 1 5.6307 0.4135 -0.1285 35 1 5.9158 -2.4455 -1.2130 36 1 6.5107 -1.7804 0.3436 37 1 3.9361 -3.7383 -1.0605 38 1 4.7768 -4.2085 0.4363 39 1 2.2816 -3.2251 1.2090 40 1 0.9085 -5.3447 2.1492 41 1 0.0603 -4.6756 0.7345 42 1 -0.8213 -6.1006 -0.9339 43 1 -1.5344 -8.3493 -1.6218 44 1 -0.7648 -10.3240 -0.4172 45 1 0.5925 -11.3132 1.4329 46 1 2.1070 -10.9292 3.3348 47 1 2.7687 -8.6373 3.9333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317506111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:40 Heat of formation + Delta-G solvation = 27.522225 kcal Electronic energy + Delta-G solvation = -29107.200684 eV Core-core repulsion = 25254.626366 eV Total energy + Delta-G solvation = -3852.574318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.87822 -40.65907 -39.41748 -38.01748 -35.47564 -35.00914 -34.62644 -32.42523 -31.77577 -31.44126 -30.93546 -28.58415 -26.52467 -25.41794 -24.98483 -24.49408 -22.71475 -22.04306 -21.42598 -20.80146 -19.17078 -19.05794 -17.97750 -17.85526 -17.73019 -17.62186 -16.73915 -16.44886 -16.06666 -15.60713 -15.37242 -15.29290 -15.01529 -14.92120 -14.76854 -14.45085 -14.26216 -13.96206 -13.85526 -13.80541 -13.60851 -13.06242 -12.96695 -12.93800 -12.66083 -12.58303 -12.55265 -12.27310 -12.13598 -12.02440 -11.72762 -11.53830 -11.42817 -11.36225 -10.80629 -10.65857 -10.36818 -9.88127 -9.68587 -9.10539 -8.74990 -8.14813 -5.55914 -0.50842 -0.08384 1.05342 1.31021 1.40815 1.51689 1.74928 2.01834 2.40730 2.50354 3.07903 3.19043 3.34907 3.41599 3.55232 3.82346 3.90224 3.91450 3.98690 4.02680 4.09491 4.12219 4.17770 4.27839 4.32351 4.38649 4.46783 4.48937 4.58848 4.63356 4.67157 4.72729 4.85110 4.89212 4.98212 4.98718 5.08737 5.13234 5.16001 5.17649 5.30371 5.46265 5.46857 5.50507 5.61771 5.65411 5.90017 5.97540 6.21650 6.66703 6.83180 7.03804 7.34079 7.56571 8.22907 9.02419 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016442 B = 0.002914 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.558700 B = 9606.164973 C =10417.953106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.023 4.023 3 Si 0.948 3.052 4 H -0.287 1.287 5 H -0.315 1.315 6 H -0.255 1.255 7 C -0.240 4.240 8 H 0.078 0.922 9 N -0.618 5.618 10 C 0.103 3.897 11 C -0.125 4.125 12 C -0.111 4.111 13 C 0.140 3.860 14 H 0.051 0.949 15 C 0.124 3.876 16 N -0.711 5.711 17 C 0.520 3.480 18 O -0.588 6.588 19 C -0.090 4.090 20 C -0.062 4.062 21 C -0.107 4.107 22 C -0.119 4.119 23 C -0.096 4.096 24 C -0.125 4.125 25 C -0.058 4.058 26 C -0.175 4.175 27 C 0.116 3.884 28 N -0.508 5.508 29 C 0.112 3.888 30 H 0.261 0.739 31 H 0.027 0.973 32 H 0.024 0.976 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.041 0.959 38 H 0.066 0.934 39 H 0.410 0.590 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.128 0.872 43 H 0.156 0.844 44 H 0.167 0.833 45 H 0.175 0.825 46 H 0.175 0.825 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.896 -18.916 3.990 19.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.219 4.219 3 Si 0.780 3.220 4 H -0.215 1.215 5 H -0.245 1.245 6 H -0.179 1.179 7 C -0.369 4.369 8 H 0.095 0.905 9 N -0.344 5.344 10 C -0.021 4.021 11 C -0.163 4.163 12 C -0.149 4.149 13 C 0.034 3.966 14 H 0.068 0.932 15 C -0.001 4.001 16 N -0.364 5.364 17 C 0.308 3.692 18 O -0.470 6.470 19 C -0.130 4.130 20 C -0.063 4.063 21 C -0.127 4.127 22 C -0.136 4.136 23 C -0.115 4.115 24 C -0.127 4.127 25 C -0.083 4.083 26 C -0.194 4.194 27 C -0.056 4.056 28 N -0.217 5.217 29 C -0.008 4.008 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.119 0.881 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.249 0.751 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.146 0.854 43 H 0.174 0.826 44 H 0.184 0.816 45 H 0.192 0.808 46 H 0.192 0.808 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.280 -18.460 3.691 19.552 hybrid contribution -0.672 0.991 -0.167 1.209 sum 4.608 -17.470 3.524 18.407 Atomic orbital electron populations 1.69899 1.07179 1.27142 1.55179 1.25991 0.95720 1.00888 0.99340 0.85776 0.79065 0.80407 0.76782 1.21522 1.24470 1.17948 1.18806 0.83464 0.93364 1.41237 0.90500 1.44854 1.04423 1.44465 1.40688 1.22080 0.93771 0.93699 0.92527 1.22752 0.94451 0.97409 1.01692 1.22520 0.95100 0.96270 1.01003 1.21488 0.89813 0.88304 0.96968 0.93166 1.21819 0.84422 0.97217 0.96683 1.46308 1.23224 1.16301 1.50551 1.20671 0.86888 0.81246 0.80387 1.90591 1.66474 1.49107 1.40777 1.20465 0.94678 0.94895 1.02977 1.19112 0.97676 0.92979 0.96554 1.21072 0.96975 0.99352 0.95256 1.21202 1.00349 0.91376 1.00717 1.21375 0.95779 1.00634 0.93673 1.19192 1.00597 0.93903 0.99013 1.21900 0.94212 0.98946 0.93260 1.22258 0.99286 0.98902 0.98992 1.23550 0.95931 0.88722 0.97389 1.67951 1.10691 1.36070 1.06947 1.18845 0.95415 0.92698 0.93866 0.93011 0.95495 0.95867 0.88274 0.91499 0.90088 0.88102 0.94093 0.91588 0.75081 0.87175 0.87865 0.85363 0.82613 0.81569 0.80756 0.80777 0.80364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.51 13.97 21.65 0.30 -57.21 16 2 C -0.02 -1.30 5.46 84.86 0.46 -0.84 16 3 Si 0.95 46.08 24.79 68.60 1.70 47.78 16 4 H -0.29 -13.74 6.77 99.48 0.67 -13.06 16 5 H -0.32 -15.70 7.11 99.48 0.71 -14.99 16 6 H -0.26 -11.61 7.06 99.48 0.70 -10.91 16 7 C -0.24 -12.77 9.49 84.03 0.80 -11.98 16 8 H 0.08 4.26 5.35 -2.91 -0.02 4.25 16 9 N -0.62 -27.90 2.69 -668.28 -1.80 -29.70 16 10 C 0.10 4.22 6.22 86.86 0.54 4.77 16 11 C -0.12 -3.76 7.08 31.99 0.23 -3.53 16 12 C -0.11 -3.07 6.47 31.78 0.21 -2.86 16 13 C 0.14 5.11 3.34 45.33 0.15 5.26 16 14 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 15 C 0.12 4.68 5.19 86.38 0.45 5.13 16 16 N -0.71 -28.58 4.36 -463.08 -2.02 -30.60 16 17 C 0.52 21.48 7.82 87.66 0.69 22.16 16 18 O -0.59 -27.56 16.01 -3.04 -0.05 -27.61 16 19 C -0.09 -3.25 5.56 29.10 0.16 -3.08 16 20 C -0.06 -2.13 4.38 -19.79 -0.09 -2.21 16 21 C -0.11 -3.22 9.56 22.03 0.21 -3.01 16 22 C -0.12 -2.76 9.96 22.05 0.22 -2.54 16 23 C -0.10 -2.02 9.78 22.31 0.22 -1.80 16 24 C -0.13 -3.18 5.74 -21.28 -0.12 -3.30 16 25 C -0.06 -1.02 9.90 22.50 0.22 -0.80 16 26 C -0.18 -2.90 10.03 22.14 0.22 -2.68 16 27 C 0.12 2.64 11.14 85.07 0.95 3.59 16 28 N -0.51 -16.12 9.51 -188.63 -1.79 -17.91 16 29 C 0.11 3.66 6.58 40.29 0.27 3.92 16 30 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 31 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.02 1.04 3.03 -2.39 -0.01 1.04 16 33 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 35 H 0.08 2.09 7.86 -2.39 -0.02 2.07 16 36 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.04 1.71 8.11 -2.39 -0.02 1.69 16 38 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 39 H 0.41 16.87 6.07 -92.71 -0.56 16.31 16 40 H 0.11 3.77 7.72 -2.39 -0.02 3.75 16 41 H 0.10 3.63 8.03 -2.38 -0.02 3.61 16 42 H 0.13 3.72 8.04 -2.91 -0.02 3.70 16 43 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 44 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 45 H 0.18 1.61 8.06 -2.91 -0.02 1.58 16 46 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 47 H 0.18 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -77.60 377.61 2.51 -75.08 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: 0.39 Total: 33.96 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 5.78 Total: 6.20 kcal Atomic # 7 Polarization: -130.11 SS G_CDS: -5.31 Total: -135.42 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.05 Total: -27.61 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.70 Total: 47.78 kcal Total: -77.60 2.51 -75.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317506111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.605 kcal (2) G-P(sol) polarization free energy of solvation -77.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds