Wall clock time and date at job start Tue Mar 31 2020 22:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99862 * 2 1 4 4 H 1.48504 * 109.47166 * 239.99774 * 3 2 1 5 5 H 1.48493 * 109.47565 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47135 * 120.00089 * 3 2 1 7 7 C 1.38810 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00069 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.65179 * 0.02562 * 9 7 2 11 11 C 1.54908 * 104.92961 * 204.15650 * 10 9 7 12 12 C 1.55154 * 101.58289 * 322.93718 * 11 10 9 13 13 H 1.08994 * 110.71922 * 276.96131 * 12 11 10 14 14 C 1.53003 * 110.72254 * 153.86462 * 12 11 10 15 15 N 1.46494 * 109.47093 * 174.99951 * 14 12 11 16 16 C 1.34776 * 119.99924 * 180.02562 * 15 14 12 17 17 O 1.21287 * 120.00227 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00539 * 179.97438 * 16 15 14 19 19 C 1.50698 * 109.47478 * 180.02562 * 18 16 15 20 20 C 1.36103 * 120.12122 * 264.72299 * 19 18 16 21 21 C 1.39321 * 121.06494 * 179.68371 * 20 19 18 22 22 C 1.36179 * 120.86420 * 0.64306 * 21 20 19 23 23 C 1.40382 * 119.61256 * 359.66328 * 22 21 20 24 24 C 1.40781 * 121.37580 * 180.02562 * 23 22 21 25 25 C 1.36575 * 118.14843 * 179.97438 * 24 23 22 26 26 C 1.39330 * 119.93965 * 359.97438 * 25 24 23 27 27 N 1.31079 * 121.75744 * 359.97438 * 26 25 24 28 28 C 1.33692 * 121.31884 * 0.02562 * 27 26 25 29 29 C 1.47290 * 125.79079 * 180.02562 * 9 7 2 30 30 H 0.97001 * 119.99611 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.36696 * 85.26297 * 10 9 7 32 32 H 1.08995 * 110.36608 * 323.05133 * 10 9 7 33 33 H 1.09008 * 111.00494 * 81.01141 * 11 10 9 34 34 H 1.09000 * 111.00857 * 204.82205 * 11 10 9 35 35 H 1.09000 * 109.46700 * 294.99905 * 14 12 11 36 36 H 1.09004 * 109.46934 * 55.00029 * 14 12 11 37 37 H 0.96994 * 120.00707 * 0.02562 * 15 14 12 38 38 H 1.09004 * 109.46702 * 300.00679 * 18 16 15 39 39 H 1.09003 * 109.46895 * 59.99543 * 18 16 15 40 40 H 1.08001 * 119.47169 * 0.02562 * 20 19 18 41 41 H 1.07996 * 119.56874 * 180.31069 * 21 20 19 42 42 H 1.08002 * 120.18698 * 179.68499 * 22 21 20 43 43 H 1.07998 * 120.92267 * 0.02562 * 24 23 22 44 44 H 1.08001 * 120.02888 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.12258 * 180.02562 * 26 25 24 46 46 H 1.09004 * 109.85762 * 59.49821 * 29 9 7 47 47 H 1.08995 * 110.00297 * 298.42768 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1416 -2.5331 -0.0028 11 6 -0.4048 -3.9317 0.6089 12 6 0.7740 -4.7541 0.0247 13 1 0.5403 -5.1019 -0.9815 14 6 1.1159 -5.9337 0.9372 15 7 2.1484 -6.7578 0.3039 16 6 2.6087 -7.8594 0.9291 17 8 2.1686 -8.1684 2.0162 18 6 3.6704 -8.7076 0.2775 19 6 4.0063 -9.8700 1.1758 20 6 5.0627 -9.7900 2.0301 21 6 5.3869 -10.8502 2.8739 22 6 4.6619 -12.0029 2.8575 23 6 3.5692 -12.1228 1.9845 24 6 2.7941 -13.2970 1.9373 25 6 1.7454 -13.3422 1.0635 26 6 1.4691 -12.2442 0.2515 27 7 2.1922 -11.1519 0.2987 28 6 3.2323 -11.0424 1.1315 29 6 1.9294 -3.7314 -0.0017 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5266 -2.4860 -1.0215 32 1 -0.5999 -1.7581 0.6114 33 1 -0.3558 -3.8977 1.6973 34 1 -1.3630 -4.3301 0.2754 35 1 1.4849 -5.5593 1.8920 36 1 0.2223 -6.5353 1.1036 37 1 2.5007 -6.5107 -0.5654 38 1 3.3011 -9.0816 -0.6775 39 1 4.5642 -8.1064 0.1110 40 1 5.6561 -8.8880 2.0584 41 1 6.2273 -10.7587 3.5459 42 1 4.9260 -12.8198 3.5128 43 1 3.0219 -14.1384 2.5749 44 1 1.1310 -14.2282 1.0019 45 1 0.6364 -12.2940 -0.4344 46 1 2.5552 -3.8562 0.8821 47 1 2.5277 -3.8711 -0.9020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317526293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:49 Heat of formation + Delta-G solvation = 17.189853 kcal Electronic energy + Delta-G solvation = -28031.213582 eV Core-core repulsion = 24178.191218 eV Total energy + Delta-G solvation = -3853.022363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.87500 -40.64876 -39.24811 -38.01483 -36.03145 -35.01666 -34.30105 -32.42537 -31.56530 -31.43282 -30.03715 -28.54378 -27.12645 -25.26473 -24.90442 -24.49177 -22.56637 -22.01930 -21.38748 -20.82677 -19.16608 -18.90265 -18.04965 -17.86063 -17.73384 -17.22879 -16.70127 -16.47644 -16.07181 -15.59026 -15.55220 -15.27792 -15.06870 -14.86035 -14.47954 -14.34122 -14.26261 -13.90833 -13.80724 -13.53994 -13.39575 -13.17693 -12.90423 -12.78378 -12.65319 -12.64154 -12.52741 -12.12286 -12.05620 -11.87874 -11.82330 -11.59149 -11.44814 -11.36939 -10.84652 -10.72948 -10.39143 -10.06163 -9.67567 -9.09810 -8.88184 -7.76976 -5.21407 -0.51512 -0.07544 1.04593 1.46283 1.49693 1.56067 1.71132 2.00922 2.32656 2.49866 3.18157 3.32181 3.41481 3.56158 3.63160 3.78010 3.83571 3.91073 3.98372 4.01381 4.08036 4.09819 4.18371 4.30395 4.40616 4.45089 4.49479 4.58559 4.64158 4.65760 4.69936 4.80769 4.90186 4.91632 5.05702 5.10552 5.11710 5.16530 5.18349 5.35104 5.45385 5.48337 5.49344 5.50301 5.65301 5.65481 5.82523 5.98189 6.31813 6.59935 7.01373 7.11090 7.30170 7.78805 8.43136 9.24758 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023611 B = 0.001998 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.606841 B =14011.478492 C =14806.297337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.070 4.070 3 Si 0.982 3.018 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.629 5.629 10 C 0.152 3.848 11 C -0.123 4.123 12 C -0.092 4.092 13 H 0.096 0.904 14 C 0.147 3.853 15 N -0.718 5.718 16 C 0.520 3.480 17 O -0.584 6.584 18 C -0.089 4.089 19 C -0.068 4.068 20 C -0.100 4.100 21 C -0.121 4.121 22 C -0.101 4.101 23 C -0.127 4.127 24 C -0.061 4.061 25 C -0.178 4.178 26 C 0.116 3.884 27 N -0.504 5.504 28 C 0.111 3.889 29 C 0.138 3.862 30 H 0.247 0.753 31 H -0.009 1.009 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.414 0.586 38 H 0.117 0.883 39 H 0.129 0.871 40 H 0.143 0.857 41 H 0.155 0.845 42 H 0.159 0.841 43 H 0.169 0.831 44 H 0.170 0.830 45 H 0.178 0.822 46 H 0.021 0.979 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.456 -30.648 1.574 31.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.810 3.190 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.368 4.368 8 H 0.098 0.902 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.162 4.162 12 C -0.111 4.111 13 H 0.114 0.886 14 C 0.023 3.977 15 N -0.370 5.370 16 C 0.308 3.692 17 O -0.464 6.464 18 C -0.128 4.128 19 C -0.069 4.069 20 C -0.120 4.120 21 C -0.138 4.138 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.087 4.087 25 C -0.197 4.197 26 C -0.056 4.056 27 N -0.212 5.212 28 C -0.009 4.009 29 C 0.014 3.986 30 H 0.057 0.943 31 H 0.009 0.991 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.250 0.750 38 H 0.135 0.865 39 H 0.147 0.853 40 H 0.161 0.839 41 H 0.173 0.827 42 H 0.177 0.823 43 H 0.187 0.813 44 H 0.187 0.813 45 H 0.195 0.805 46 H 0.039 0.961 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 7.999 -29.852 1.823 30.959 hybrid contribution 0.365 0.807 0.048 0.887 sum 8.364 -29.045 1.872 30.283 Atomic orbital electron populations 1.70052 1.06212 1.25079 1.58610 1.25666 0.96693 1.01078 1.02813 0.85105 0.77097 0.78653 0.78193 1.20284 1.21961 1.20382 1.19421 0.91017 0.83828 1.42553 0.90171 1.44888 1.02797 1.00999 1.86858 1.21725 0.84170 0.94769 0.96635 1.22850 0.97825 0.95656 0.99918 1.22265 0.95742 0.93259 0.99874 0.88551 1.21115 0.90859 0.90464 0.95260 1.45946 1.41419 1.26055 1.23630 1.20908 0.82803 0.80510 0.84960 1.90674 1.60765 1.71855 1.23090 1.20547 0.98847 0.93997 0.99435 1.19182 0.95544 0.93314 0.98832 1.21129 0.96567 0.99974 0.94312 1.21244 1.00790 0.92878 0.98916 1.21356 0.93558 0.99347 0.97690 1.19188 0.98975 0.95743 0.98985 1.21889 0.93151 0.96619 0.97019 1.22235 0.99231 1.01086 0.97152 1.23502 0.97278 0.88100 0.96700 1.67952 1.05607 1.26398 1.21285 1.18938 0.93636 0.94260 0.94111 1.21540 0.94676 0.84525 0.97903 0.94343 0.99114 0.91097 0.92131 0.89378 0.93213 0.91593 0.74964 0.86535 0.85281 0.83875 0.82733 0.82347 0.81317 0.81257 0.80486 0.96145 0.95088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.35 10.09 21.65 0.22 -57.14 16 2 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 3 Si 0.98 46.11 29.55 68.60 2.03 48.14 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.24 -13.59 10.28 84.03 0.86 -12.73 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 9 N -0.63 -32.80 3.40 -691.31 -2.35 -35.15 16 10 C 0.15 7.58 5.89 86.85 0.51 8.09 16 11 C -0.12 -4.60 6.53 31.98 0.21 -4.39 16 12 C -0.09 -3.01 2.96 -9.60 -0.03 -3.03 16 13 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 14 C 0.15 4.41 5.02 86.38 0.43 4.85 16 15 N -0.72 -18.40 5.47 -463.05 -2.53 -20.93 16 16 C 0.52 14.71 7.82 87.66 0.69 15.40 16 17 O -0.58 -21.79 16.03 -3.05 -0.05 -21.84 16 18 C -0.09 -1.88 5.56 29.10 0.16 -1.72 16 19 C -0.07 -1.61 4.38 -19.80 -0.09 -1.69 16 20 C -0.10 -1.97 9.56 22.03 0.21 -1.76 16 21 C -0.12 -1.93 9.96 22.05 0.22 -1.71 16 22 C -0.10 -1.60 9.77 22.31 0.22 -1.38 16 23 C -0.13 -2.57 5.74 -21.28 -0.12 -2.69 16 24 C -0.06 -0.87 9.90 22.50 0.22 -0.65 16 25 C -0.18 -2.36 10.03 22.14 0.22 -2.14 16 26 C 0.12 2.12 11.14 85.07 0.95 3.07 16 27 N -0.50 -12.65 9.51 -188.64 -1.79 -14.44 16 28 C 0.11 2.81 6.58 40.28 0.27 3.08 16 29 C 0.14 5.59 6.77 86.68 0.59 6.17 16 30 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 31 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.07 4.06 5.86 -2.39 -0.01 4.05 16 33 H 0.06 2.29 8.05 -2.38 -0.02 2.27 16 34 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.05 1.69 7.93 -2.39 -0.02 1.67 16 36 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.41 8.39 8.47 -92.71 -0.79 7.60 16 38 H 0.12 2.30 7.71 -2.38 -0.02 2.28 16 39 H 0.13 1.91 8.04 -2.39 -0.02 1.89 16 40 H 0.14 2.22 8.04 -2.91 -0.02 2.20 16 41 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 42 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 43 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 44 H 0.17 0.97 8.06 -2.91 -0.02 0.94 16 45 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 46 H 0.02 0.85 7.68 -2.38 -0.02 0.83 16 47 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -80.63 387.69 1.70 -78.93 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.20 Total: 19.27 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 5.99 Total: 3.18 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -6.46 Total: -127.67 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.05 Total: -21.84 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -80.63 1.70 -78.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317526293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.116 kcal (2) G-P(sol) polarization free energy of solvation -80.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds