Wall clock time and date at job start Tue Mar 31 2020 22:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99724 * 2 1 4 4 H 1.48500 * 109.47229 * 274.98541 * 3 2 1 5 5 H 1.48506 * 109.47275 * 34.98555 * 3 2 1 6 6 H 1.48496 * 109.47047 * 154.98665 * 3 2 1 7 7 C 1.38810 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00046 * 187.05503 * 7 2 1 9 9 N 1.36934 * 120.00394 * 7.05437 * 7 2 1 10 10 C 1.47028 * 125.64438 * 354.78961 * 9 7 2 11 11 C 1.54323 * 107.26852 * 178.97913 * 10 9 7 12 12 C 1.55150 * 103.10435 * 337.71709 * 11 10 9 13 13 H 1.09004 * 111.00911 * 277.52035 * 12 11 10 14 14 C 1.52998 * 111.00643 * 153.66450 * 12 11 10 15 15 C 1.52999 * 109.47149 * 174.99800 * 14 12 11 16 16 N 1.46508 * 109.47120 * 180.02562 * 15 14 12 17 17 C 1.34773 * 119.99921 * 180.02562 * 16 15 14 18 18 O 1.21556 * 120.00239 * 359.97438 * 17 16 15 19 19 C 1.47755 * 119.99757 * 180.02562 * 17 16 15 20 20 C 1.40603 * 120.26904 * 359.72324 * 19 17 16 21 21 N 1.30807 * 121.53736 * 179.71384 * 20 19 17 22 22 C 1.33818 * 121.71710 * 0.54802 * 21 20 19 23 23 C 1.40526 * 120.81764 * 179.71830 * 22 21 20 24 24 C 1.36142 * 119.81332 * 180.02562 * 23 22 21 25 25 C 1.39341 * 121.08918 * 0.02562 * 24 23 22 26 26 C 1.36143 * 120.83393 * 0.02684 * 25 24 23 27 27 C 1.40539 * 119.61694 * 359.95079 * 26 25 24 28 28 C 1.39009 * 120.26937 * 179.97438 * 19 17 16 29 29 C 1.47422 * 125.65362 * 174.83366 * 9 7 2 30 30 H 0.96999 * 120.00543 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.88093 * 59.55835 * 10 9 7 32 32 H 1.09004 * 110.01440 * 298.46393 * 10 9 7 33 33 H 1.08994 * 110.72425 * 96.17631 * 11 10 9 34 34 H 1.09008 * 110.71830 * 219.26735 * 11 10 9 35 35 H 1.08994 * 109.47146 * 295.00278 * 14 12 11 36 36 H 1.09003 * 109.46842 * 55.00455 * 14 12 11 37 37 H 1.08994 * 109.47487 * 300.00269 * 15 14 12 38 38 H 1.09001 * 109.47188 * 60.00790 * 15 14 12 39 39 H 0.96994 * 119.99782 * 0.02562 * 16 15 14 40 40 H 1.07998 * 119.22797 * 359.97405 * 20 19 17 41 41 H 1.07992 * 120.09377 * 0.04995 * 23 22 21 42 42 H 1.07997 * 119.45128 * 180.02562 * 24 23 22 43 43 H 1.08004 * 119.58517 * 179.97438 * 25 24 23 44 44 H 1.07993 * 120.18897 * 180.02562 * 26 25 24 45 45 H 1.08002 * 121.01883 * 359.97438 * 28 19 17 46 46 H 1.08996 * 110.36357 * 322.93117 * 29 9 7 47 47 H 1.09004 * 110.36574 * 85.25327 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4121 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0842 -1.2057 0.1143 9 7 1.3335 -2.3835 -0.1467 10 6 -0.1281 -2.5323 -0.2033 11 6 -0.4285 -4.0332 -0.3999 12 6 0.8887 -4.5784 -1.0120 13 1 0.9224 -4.4020 -2.0872 14 6 1.0661 -6.0649 -0.6966 15 6 2.3068 -6.5949 -1.4182 16 7 2.4762 -8.0186 -1.1166 17 6 3.5106 -8.7011 -1.6463 18 8 4.3027 -8.1357 -2.3746 19 6 3.6811 -10.1370 -1.3426 20 6 2.7710 -10.7956 -0.4970 21 7 2.8952 -12.0670 -0.2159 22 6 3.8989 -12.8019 -0.7092 23 6 4.0174 -14.1653 -0.3900 24 6 5.0471 -14.8934 -0.9029 25 6 5.9927 -14.3096 -1.7434 26 6 5.9125 -12.9916 -2.0749 27 6 4.8624 -12.2096 -1.5640 28 6 4.7457 -10.8466 -1.8863 29 6 1.9496 -3.7169 -0.2725 30 1 -0.4851 0.8400 0.0004 31 1 -0.5266 -1.9614 -1.0420 32 1 -0.5749 -2.1837 0.7279 33 1 -0.6372 -4.5132 0.5561 34 1 -1.2610 -4.1727 -1.0896 35 1 1.1872 -6.1962 0.3786 36 1 0.1873 -6.6151 -1.0331 37 1 2.1856 -6.4636 -2.4934 38 1 3.1856 -6.0449 -1.0816 39 1 1.8440 -8.4699 -0.5357 40 1 1.9479 -10.2396 -0.0731 41 1 3.2936 -14.6342 0.2599 42 1 5.1323 -15.9409 -0.6541 43 1 6.8000 -14.9100 -2.1362 44 1 6.6508 -12.5498 -2.7275 45 1 5.4616 -10.3651 -2.5359 46 1 2.8659 -3.6575 -0.8598 47 1 2.1562 -4.1338 0.7133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317801469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:24 Heat of formation + Delta-G solvation = 37.061918 kcal Electronic energy + Delta-G solvation = -27274.637604 eV Core-core repulsion = 23422.476958 eV Total energy + Delta-G solvation = -3852.160646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.39126 -39.73963 -37.81417 -37.33924 -35.38383 -33.88801 -33.09768 -31.56602 -30.60211 -30.44930 -28.95180 -26.80921 -25.24244 -24.54386 -24.27543 -22.57499 -22.31196 -21.29599 -19.98869 -19.61536 -18.62942 -18.20704 -17.60077 -16.81681 -16.28376 -15.80126 -15.67923 -15.11050 -15.04268 -14.71416 -14.65464 -14.51651 -14.11629 -13.91085 -13.74816 -13.61903 -13.47300 -12.48926 -12.32642 -12.28183 -12.20679 -12.02335 -11.90881 -11.82599 -11.55505 -11.11314 -10.96604 -10.86219 -10.76222 -10.54452 -10.11315 -9.96908 -9.93247 -9.80778 -9.72542 -9.61060 -9.37666 -9.16522 -8.77317 -8.54036 -6.78287 -5.68994 -3.00760 -0.23027 0.14047 1.40398 2.13621 2.87808 2.92454 3.42659 3.48016 3.49752 3.65050 3.70285 4.08155 4.22750 4.29548 4.33158 4.51625 4.53526 4.63279 4.73268 4.88472 4.93643 5.07993 5.25273 5.28427 5.39141 5.39878 5.49847 5.53904 5.61148 5.65481 5.76171 5.80637 5.86542 5.90399 5.96700 6.01950 6.09317 6.20373 6.27893 6.30826 6.41167 6.57524 6.61539 6.75361 6.99327 7.24351 7.36464 7.59847 7.67819 7.86481 7.94731 8.30214 9.26031 9.86859 10.53696 11.43231 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029550 B = 0.001651 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.330043 B =16950.425479 C =17547.651088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.176 3.824 11 C -0.138 4.138 12 C -0.101 4.101 13 H 0.076 0.924 14 C -0.117 4.117 15 C 0.117 3.883 16 N -0.721 5.721 17 C 0.561 3.439 18 O -0.533 6.533 19 C -0.192 4.192 20 C 0.162 3.838 21 N -0.475 5.475 22 C 0.141 3.859 23 C -0.099 4.099 24 C -0.091 4.091 25 C -0.120 4.120 26 C -0.085 4.085 27 C -0.113 4.113 28 C 0.013 3.987 29 C 0.140 3.860 30 H 0.251 0.749 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.399 0.601 40 H 0.163 0.837 41 H 0.138 0.862 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.154 0.846 46 H 0.038 0.962 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.815 -31.640 -2.748 32.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.051 3.949 11 C -0.176 4.176 12 C -0.121 4.121 13 H 0.095 0.905 14 C -0.155 4.155 15 C -0.005 4.005 16 N -0.373 5.373 17 C 0.347 3.653 18 O -0.410 6.410 19 C -0.198 4.198 20 C -0.012 4.012 21 N -0.182 5.182 22 C 0.020 3.980 23 C -0.117 4.117 24 C -0.111 4.111 25 C -0.138 4.138 26 C -0.104 4.104 27 C -0.115 4.115 28 C -0.014 4.014 29 C 0.014 3.986 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.234 0.766 40 H 0.180 0.820 41 H 0.156 0.844 42 H 0.150 0.850 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.172 0.828 46 H 0.056 0.944 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 6.759 -31.472 -2.699 32.303 hybrid contribution 0.641 1.169 -0.206 1.349 sum 7.400 -30.303 -2.906 31.329 Atomic orbital electron populations 1.69983 1.04907 1.24952 1.56998 1.24817 0.95698 0.97647 1.02310 0.86129 0.78695 0.83672 0.77495 1.21639 1.21802 1.20650 1.19077 0.91141 0.82663 1.42747 0.90466 1.44478 1.01752 1.01027 1.86035 1.21140 0.84467 0.88620 1.00669 1.22892 0.95829 0.99665 0.99263 1.22345 0.97685 0.91710 1.00337 0.90528 1.21755 0.96294 0.96835 1.00645 1.21570 0.99493 0.78779 1.00672 1.45993 1.28609 1.11923 1.50748 1.17947 0.81391 0.85618 0.80352 1.90809 1.43405 1.69904 1.36910 1.20998 0.99563 0.95475 1.03718 1.23063 0.96162 0.90320 0.91660 1.67961 1.20890 1.06784 1.22591 1.19030 0.90655 0.94527 0.93781 1.20857 0.98981 0.91472 1.00405 1.21022 0.93741 1.00423 0.95924 1.20982 0.99418 0.95156 0.98284 1.21104 0.96567 0.94090 0.98625 1.18850 0.97840 0.94377 1.00432 1.22004 0.94559 0.91714 0.93074 1.21699 0.94387 0.86580 0.95965 0.93826 0.93571 0.94293 0.92585 0.92367 0.91162 0.91512 0.91101 0.90629 0.76599 0.82037 0.84390 0.84989 0.85147 0.84732 0.82795 0.94421 0.96552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.42 10.36 55.49 0.57 -26.84 16 2 C -0.01 -0.25 5.48 -17.43 -0.10 -0.34 16 3 Si 0.91 22.44 29.56 -169.99 -5.02 17.42 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.23 -6.48 10.26 -15.06 -0.15 -6.64 16 8 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 9 N -0.61 -15.69 3.40 -169.77 -0.58 -16.27 16 10 C 0.18 4.28 5.38 -3.06 -0.02 4.27 16 11 C -0.14 -2.48 6.40 -24.90 -0.16 -2.64 16 12 C -0.10 -1.65 3.02 -88.22 -0.27 -1.92 16 13 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 14 C -0.12 -1.39 4.85 -26.73 -0.13 -1.52 16 15 C 0.12 1.41 5.58 -4.04 -0.02 1.39 16 16 N -0.72 -7.25 5.51 -61.28 -0.34 -7.59 16 17 C 0.56 6.68 7.77 -12.37 -0.10 6.58 16 18 O -0.53 -8.32 16.38 5.32 0.09 -8.24 16 19 C -0.19 -1.91 5.89 -104.83 -0.62 -2.53 16 20 C 0.16 1.42 10.68 -17.10 -0.18 1.24 16 21 N -0.48 -4.78 10.30 -10.67 -0.11 -4.89 16 22 C 0.14 1.34 6.61 -84.79 -0.56 0.78 16 23 C -0.10 -0.72 9.97 -39.47 -0.39 -1.12 16 24 C -0.09 -0.49 9.94 -39.92 -0.40 -0.89 16 25 C -0.12 -0.63 9.96 -39.92 -0.40 -1.03 16 26 C -0.09 -0.55 9.77 -39.47 -0.39 -0.94 16 27 C -0.11 -1.00 5.74 -106.81 -0.61 -1.61 16 28 C 0.01 0.12 9.46 -38.43 -0.36 -0.24 16 29 C 0.14 2.86 6.23 -2.27 -0.01 2.85 16 30 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.05 1.25 7.30 -51.93 -0.38 0.87 16 32 H 0.04 1.05 7.61 -51.93 -0.40 0.65 16 33 H 0.06 0.93 8.04 -51.93 -0.42 0.52 16 34 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 35 H 0.07 0.81 7.97 -51.93 -0.41 0.39 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 1.04 7.77 -51.93 -0.40 0.64 16 39 H 0.40 2.79 6.50 -40.82 -0.27 2.52 16 40 H 0.16 0.93 6.37 -52.49 -0.33 0.59 16 41 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 43 H 0.13 0.36 8.06 -52.48 -0.42 -0.06 16 44 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 45 H 0.15 1.32 7.70 -52.49 -0.40 0.92 16 46 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.02 0.34 7.92 -51.93 -0.41 -0.07 16 LS Contribution 386.10 15.07 5.82 5.82 Total: -1.00 -35.00 386.10 -11.21 -46.21 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.78 Total: -1.32 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -4.87 Total: -4.30 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.45 Total: -55.59 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.24 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.00 -11.21 -46.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317801469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.271 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds