Wall clock time and date at job start Tue Mar 31 2020 22:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99724 * 2 1 4 4 H 1.48500 * 109.47229 * 274.98541 * 3 2 1 5 5 H 1.48506 * 109.47275 * 34.98555 * 3 2 1 6 6 H 1.48496 * 109.47047 * 154.98665 * 3 2 1 7 7 C 1.38810 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00046 * 187.05503 * 7 2 1 9 9 N 1.36934 * 120.00394 * 7.05437 * 7 2 1 10 10 C 1.47028 * 125.64438 * 354.78961 * 9 7 2 11 11 C 1.54323 * 107.26852 * 178.97913 * 10 9 7 12 12 C 1.55150 * 103.10435 * 337.71709 * 11 10 9 13 13 H 1.09004 * 111.00911 * 277.52035 * 12 11 10 14 14 C 1.52998 * 111.00643 * 153.66450 * 12 11 10 15 15 C 1.52999 * 109.47149 * 174.99800 * 14 12 11 16 16 N 1.46508 * 109.47120 * 180.02562 * 15 14 12 17 17 C 1.34773 * 119.99921 * 180.02562 * 16 15 14 18 18 O 1.21556 * 120.00239 * 359.97438 * 17 16 15 19 19 C 1.47755 * 119.99757 * 180.02562 * 17 16 15 20 20 C 1.40603 * 120.26904 * 359.72324 * 19 17 16 21 21 N 1.30807 * 121.53736 * 179.71384 * 20 19 17 22 22 C 1.33818 * 121.71710 * 0.54802 * 21 20 19 23 23 C 1.40526 * 120.81764 * 179.71830 * 22 21 20 24 24 C 1.36142 * 119.81332 * 180.02562 * 23 22 21 25 25 C 1.39341 * 121.08918 * 0.02562 * 24 23 22 26 26 C 1.36143 * 120.83393 * 0.02684 * 25 24 23 27 27 C 1.40539 * 119.61694 * 359.95079 * 26 25 24 28 28 C 1.39009 * 120.26937 * 179.97438 * 19 17 16 29 29 C 1.47422 * 125.65362 * 174.83366 * 9 7 2 30 30 H 0.96999 * 120.00543 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.88093 * 59.55835 * 10 9 7 32 32 H 1.09004 * 110.01440 * 298.46393 * 10 9 7 33 33 H 1.08994 * 110.72425 * 96.17631 * 11 10 9 34 34 H 1.09008 * 110.71830 * 219.26735 * 11 10 9 35 35 H 1.08994 * 109.47146 * 295.00278 * 14 12 11 36 36 H 1.09003 * 109.46842 * 55.00455 * 14 12 11 37 37 H 1.08994 * 109.47487 * 300.00269 * 15 14 12 38 38 H 1.09001 * 109.47188 * 60.00790 * 15 14 12 39 39 H 0.96994 * 119.99782 * 0.02562 * 16 15 14 40 40 H 1.07998 * 119.22797 * 359.97405 * 20 19 17 41 41 H 1.07992 * 120.09377 * 0.04995 * 23 22 21 42 42 H 1.07997 * 119.45128 * 180.02562 * 24 23 22 43 43 H 1.08004 * 119.58517 * 179.97438 * 25 24 23 44 44 H 1.07993 * 120.18897 * 180.02562 * 26 25 24 45 45 H 1.08002 * 121.01883 * 359.97438 * 28 19 17 46 46 H 1.08996 * 110.36357 * 322.93117 * 29 9 7 47 47 H 1.09004 * 110.36574 * 85.25327 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4121 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0842 -1.2057 0.1143 9 7 1.3335 -2.3835 -0.1467 10 6 -0.1281 -2.5323 -0.2033 11 6 -0.4285 -4.0332 -0.3999 12 6 0.8887 -4.5784 -1.0120 13 1 0.9224 -4.4020 -2.0872 14 6 1.0661 -6.0649 -0.6966 15 6 2.3068 -6.5949 -1.4182 16 7 2.4762 -8.0186 -1.1166 17 6 3.5106 -8.7011 -1.6463 18 8 4.3027 -8.1357 -2.3746 19 6 3.6811 -10.1370 -1.3426 20 6 2.7710 -10.7956 -0.4970 21 7 2.8952 -12.0670 -0.2159 22 6 3.8989 -12.8019 -0.7092 23 6 4.0174 -14.1653 -0.3900 24 6 5.0471 -14.8934 -0.9029 25 6 5.9927 -14.3096 -1.7434 26 6 5.9125 -12.9916 -2.0749 27 6 4.8624 -12.2096 -1.5640 28 6 4.7457 -10.8466 -1.8863 29 6 1.9496 -3.7169 -0.2725 30 1 -0.4851 0.8400 0.0004 31 1 -0.5266 -1.9614 -1.0420 32 1 -0.5749 -2.1837 0.7279 33 1 -0.6372 -4.5132 0.5561 34 1 -1.2610 -4.1727 -1.0896 35 1 1.1872 -6.1962 0.3786 36 1 0.1873 -6.6151 -1.0331 37 1 2.1856 -6.4636 -2.4934 38 1 3.1856 -6.0449 -1.0816 39 1 1.8440 -8.4699 -0.5357 40 1 1.9479 -10.2396 -0.0731 41 1 3.2936 -14.6342 0.2599 42 1 5.1323 -15.9409 -0.6541 43 1 6.8000 -14.9100 -2.1362 44 1 6.6508 -12.5498 -2.7275 45 1 5.4616 -10.3651 -2.5359 46 1 2.8659 -3.6575 -0.8598 47 1 2.1562 -4.1338 0.7133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317801469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:23 Heat of formation + Delta-G solvation = 14.903888 kcal Electronic energy + Delta-G solvation = -27275.598448 eV Core-core repulsion = 23422.476958 eV Total energy + Delta-G solvation = -3853.121490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.02842 -40.60911 -39.35464 -37.93411 -36.55287 -34.78516 -34.51885 -32.78127 -31.66777 -31.07141 -30.57380 -28.25076 -26.72423 -25.48086 -25.11207 -23.51942 -23.12299 -22.17831 -21.81736 -20.94085 -19.34360 -18.88897 -18.84227 -18.19933 -17.03441 -16.86858 -16.67947 -16.52605 -16.25746 -15.60883 -15.53720 -15.46963 -15.30283 -14.91808 -14.80147 -14.44008 -14.17445 -14.08410 -13.83728 -13.64692 -13.31269 -13.05984 -12.80877 -12.78593 -12.75001 -12.64802 -12.43745 -12.23641 -11.99688 -11.82309 -11.65108 -11.62455 -11.37129 -11.30537 -11.24693 -10.68380 -10.56412 -10.22002 -9.83750 -9.31803 -8.87552 -7.86564 -5.20194 -0.84640 -0.43796 0.81770 1.43934 1.46163 1.48838 1.54936 2.01671 2.19832 2.49077 3.04452 3.14047 3.31244 3.51771 3.55607 3.65770 3.71794 3.77031 3.81849 3.95417 3.99450 4.17482 4.20634 4.29791 4.36515 4.38611 4.42777 4.63563 4.69068 4.70820 4.76642 4.81814 4.92590 4.94001 5.02957 5.03967 5.14260 5.18421 5.27243 5.32425 5.36716 5.40871 5.45426 5.45595 5.55670 5.71689 5.80715 5.82828 6.21488 6.43673 6.73631 7.09890 7.11326 7.79781 8.44349 9.24282 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029550 B = 0.001651 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.330043 B =16950.425479 C =17547.651088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.976 3.024 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.631 5.631 10 C 0.179 3.821 11 C -0.122 4.122 12 C -0.085 4.085 13 H 0.072 0.928 14 C -0.101 4.101 15 C 0.123 3.877 16 N -0.706 5.706 17 C 0.563 3.437 18 O -0.578 6.578 19 C -0.206 4.206 20 C 0.162 3.838 21 N -0.494 5.494 22 C 0.119 3.881 23 C -0.119 4.119 24 C -0.079 4.079 25 C -0.116 4.116 26 C -0.095 4.095 27 C -0.128 4.128 28 C 0.009 3.991 29 C 0.133 3.867 30 H 0.247 0.753 31 H 0.008 0.992 32 H 0.001 0.999 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.416 0.584 40 H 0.189 0.811 41 H 0.146 0.854 42 H 0.164 0.836 43 H 0.162 0.838 44 H 0.152 0.848 45 H 0.154 0.846 46 H 0.033 0.967 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.448 -34.778 -2.652 35.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.805 3.195 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.374 4.374 8 H 0.097 0.903 9 N -0.357 5.357 10 C 0.054 3.946 11 C -0.160 4.160 12 C -0.105 4.105 13 H 0.091 0.909 14 C -0.139 4.139 15 C -0.001 4.001 16 N -0.358 5.358 17 C 0.350 3.650 18 O -0.459 6.459 19 C -0.211 4.211 20 C -0.012 4.012 21 N -0.201 5.201 22 C -0.001 4.001 23 C -0.137 4.137 24 C -0.098 4.098 25 C -0.133 4.133 26 C -0.114 4.114 27 C -0.130 4.130 28 C -0.018 4.018 29 C 0.008 3.992 30 H 0.056 0.944 31 H 0.026 0.974 32 H 0.020 0.980 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.255 0.745 40 H 0.206 0.794 41 H 0.163 0.837 42 H 0.181 0.819 43 H 0.179 0.821 44 H 0.170 0.830 45 H 0.172 0.828 46 H 0.051 0.949 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.386 -34.665 -2.580 35.537 hybrid contribution 0.536 2.015 -0.232 2.098 sum 7.921 -32.650 -2.812 33.715 Atomic orbital electron populations 1.70204 1.06269 1.25222 1.58143 1.25664 0.96632 1.01001 1.02677 0.85090 0.77850 0.79305 0.77304 1.21436 1.21934 1.19338 1.19465 0.91577 0.84216 1.42148 0.90342 1.44833 1.02727 1.02299 1.85886 1.20957 0.83669 0.92746 0.97214 1.22755 0.97326 0.94767 1.01197 1.22223 0.94852 0.94004 0.99408 0.90928 1.21605 0.97347 0.93450 1.01457 1.21363 0.98818 0.79627 1.00247 1.45784 1.28486 1.11098 1.50463 1.18222 0.80943 0.86287 0.79542 1.90783 1.45101 1.70938 1.39078 1.20869 1.00710 0.94353 1.05205 1.23402 0.96448 0.90192 0.91162 1.67998 1.21549 1.07256 1.23310 1.19431 0.90879 0.95567 0.94240 1.21084 1.00271 0.90906 1.01452 1.21446 0.92376 1.01724 0.94302 1.21404 0.99812 0.94831 0.97278 1.21402 0.96335 0.94731 0.98888 1.19027 0.98747 0.94267 1.00976 1.22154 0.94461 0.92295 0.92875 1.21931 0.95396 0.85069 0.96835 0.94418 0.97365 0.98036 0.90468 0.90013 0.89884 0.88273 0.91825 0.92705 0.74530 0.79395 0.83656 0.81880 0.82082 0.83030 0.82794 0.94867 0.95687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.59 10.36 21.65 0.22 -58.37 16 2 C -0.07 -3.92 5.48 84.86 0.46 -3.46 16 3 Si 0.98 47.09 29.56 68.60 2.03 49.12 16 4 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.24 -14.25 10.26 84.03 0.86 -13.39 16 8 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 9 N -0.63 -33.33 3.40 -691.02 -2.35 -35.68 16 10 C 0.18 8.96 5.38 86.73 0.47 9.43 16 11 C -0.12 -4.18 6.40 31.78 0.20 -3.98 16 12 C -0.08 -2.63 3.02 -9.24 -0.03 -2.66 16 13 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 14 C -0.10 -2.06 4.85 30.59 0.15 -1.91 16 15 C 0.12 2.76 5.58 86.38 0.48 3.24 16 16 N -0.71 -12.98 5.51 -466.06 -2.57 -15.55 16 17 C 0.56 13.19 7.77 86.76 0.67 13.86 16 18 O -0.58 -18.42 16.38 -3.89 -0.06 -18.48 16 19 C -0.21 -4.03 5.89 -20.00 -0.12 -4.15 16 20 C 0.16 2.67 10.68 85.42 0.91 3.59 16 21 N -0.49 -9.55 10.30 -187.68 -1.93 -11.49 16 22 C 0.12 2.17 6.61 40.27 0.27 2.44 16 23 C -0.12 -1.55 9.97 22.34 0.22 -1.33 16 24 C -0.08 -0.62 9.94 22.05 0.22 -0.40 16 25 C -0.12 -0.87 9.96 22.05 0.22 -0.65 16 26 C -0.09 -1.07 9.77 22.34 0.22 -0.86 16 27 C -0.13 -2.18 5.74 -21.28 -0.12 -2.30 16 28 C 0.01 0.16 9.46 23.02 0.22 0.38 16 29 C 0.13 5.38 6.23 87.02 0.54 5.92 16 30 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 31 H 0.01 0.46 7.30 -2.39 -0.02 0.44 16 32 H 0.00 0.08 7.61 -2.38 -0.02 0.06 16 33 H 0.08 2.34 8.04 -2.39 -0.02 2.32 16 34 H 0.08 2.44 8.14 -2.38 -0.02 2.43 16 35 H 0.08 1.57 7.97 -2.39 -0.02 1.55 16 36 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.48 7.77 -2.39 -0.02 1.46 16 39 H 0.42 4.63 6.50 -92.71 -0.60 4.03 16 40 H 0.19 1.75 6.37 -2.91 -0.02 1.73 16 41 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.16 0.22 8.06 -2.91 -0.02 0.20 16 43 H 0.16 0.21 8.06 -2.91 -0.02 0.19 16 44 H 0.15 1.08 8.06 -2.91 -0.02 1.05 16 45 H 0.15 2.75 7.70 -2.91 -0.02 2.73 16 46 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.03 0.99 7.92 -2.39 -0.02 0.97 16 Total: -1.00 -80.40 386.10 1.58 -78.83 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 0.38 Total: 7.82 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 5.85 Total: 3.79 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -6.62 Total: -121.08 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.06 Total: -18.48 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -80.40 1.58 -78.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317801469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.732 kcal (2) G-P(sol) polarization free energy of solvation -80.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds