Wall clock time and date at job start Tue Mar 31 2020 23:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99656 * 2 1 4 4 H 1.48505 * 109.46590 * 90.00656 * 3 2 1 5 5 H 1.48495 * 109.47056 * 210.00239 * 3 2 1 6 6 H 1.48496 * 109.47294 * 330.00687 * 3 2 1 7 7 C 1.38813 * 120.00215 * 180.28470 * 2 1 3 8 8 H 1.07992 * 119.99762 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99665 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99495 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47128 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47359 * 180.02562 * 11 10 9 13 13 H 1.08992 * 110.88881 * 305.69623 * 12 11 10 14 14 C 1.55161 * 111.00346 * 181.81615 * 12 11 10 15 15 C 1.54322 * 102.94174 * 206.42276 * 14 12 11 16 16 N 1.47020 * 107.27406 * 22.19922 * 15 14 12 17 17 C 1.34775 * 125.65081 * 181.09856 * 16 15 14 18 18 O 1.21608 * 119.99798 * 174.71779 * 17 16 15 19 19 C 1.47438 * 120.00043 * 354.71315 * 17 16 15 20 20 C 1.38948 * 121.17365 * 315.64966 * 19 17 16 21 21 N 1.32200 * 121.32208 * 180.02562 * 20 19 17 22 22 C 1.31199 * 123.69431 * 359.97438 * 21 20 19 23 23 C 1.40387 * 120.91276 * 359.97438 * 22 21 20 24 24 C 1.40393 * 122.14140 * 180.02562 * 23 22 21 25 25 C 1.36232 * 119.48852 * 179.97438 * 24 23 22 26 26 C 1.39293 * 121.10092 * 0.02562 * 25 24 23 27 27 C 1.36440 * 120.95074 * 359.97438 * 26 25 24 28 28 C 1.39694 * 119.43308 * 359.74671 * 27 26 25 29 29 C 1.47472 * 108.71855 * 1.02103 * 16 15 14 30 30 H 0.97001 * 120.00172 * 359.71857 * 1 2 3 31 31 H 0.96999 * 120.00333 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.47614 * 300.00170 * 10 9 7 33 33 H 1.09003 * 109.47256 * 60.00084 * 10 9 7 34 34 H 1.09004 * 109.47141 * 300.00037 * 11 10 9 35 35 H 1.09003 * 109.47287 * 59.99731 * 11 10 9 36 36 H 1.08999 * 110.72602 * 324.78829 * 14 12 11 37 37 H 1.09000 * 110.71679 * 88.06392 * 14 12 11 38 38 H 1.09003 * 109.88103 * 141.61093 * 15 14 12 39 39 H 1.09001 * 109.88445 * 262.61975 * 15 14 12 40 40 H 1.08004 * 119.34301 * 359.97438 * 20 19 17 41 41 H 1.07998 * 119.54287 * 180.02562 * 22 21 20 42 42 H 1.08005 * 120.26085 * 359.95766 * 24 23 22 43 43 H 1.08001 * 119.44571 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.51971 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.28085 * 180.02562 * 27 26 25 46 46 H 1.09005 * 110.40415 * 217.08714 * 29 16 15 47 47 H 1.08998 * 110.34725 * 94.74800 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5477 1.4403 -0.7001 6 1 1.4475 2.6527 -0.6999 7 6 2.0104 -1.2021 -0.0060 8 1 3.0903 -1.2020 -0.0056 9 7 1.3256 -2.3880 -0.0113 10 6 2.0582 -3.6566 -0.0171 11 6 1.0641 -4.8196 -0.0230 12 6 1.8291 -6.1446 -0.0283 13 1 2.5386 -6.1803 -0.8549 14 6 0.8534 -7.3499 -0.0803 15 6 1.6638 -8.4797 0.5893 16 7 2.6918 -7.8430 1.4256 17 6 3.6184 -8.4899 2.1600 18 8 4.4824 -7.8606 2.7399 19 6 3.5846 -9.9605 2.2603 20 6 2.3916 -10.6393 2.4764 21 7 2.3579 -11.9578 2.5673 22 6 3.4194 -12.7218 2.4639 23 6 4.6896 -12.1659 2.2436 24 6 5.8423 -12.9589 2.1283 25 6 7.0481 -12.3623 1.9141 26 6 7.1570 -10.9777 1.8080 27 6 6.0574 -10.1770 1.9151 28 6 4.8045 -10.7566 2.1290 29 6 2.5426 -6.3792 1.3265 30 1 -0.4850 0.8400 0.0041 31 1 0.3556 -2.3881 -0.0113 32 1 2.6849 -3.7104 -0.9073 33 1 2.6849 -3.7184 0.8727 34 1 0.4370 -4.7661 0.8671 35 1 0.4377 -4.7577 -0.9129 36 1 -0.0529 -7.1373 0.4866 37 1 0.6129 -7.6071 -1.1119 38 1 1.0070 -9.0896 1.2095 39 1 2.1348 -9.1001 -0.1732 40 1 1.4736 -10.0787 2.5728 41 1 3.3146 -13.7934 2.5486 42 1 5.7737 -14.0338 2.2091 43 1 7.9345 -12.9730 1.8260 44 1 8.1259 -10.5315 1.6385 45 1 6.1542 -9.1047 1.8307 46 1 3.5200 -5.8966 1.3290 47 1 1.9312 -6.0042 2.1472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326440080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:11 Heat of formation + Delta-G solvation = 10.452071 kcal Electronic energy + Delta-G solvation = -28022.613295 eV Core-core repulsion = 24169.298760 eV Total energy + Delta-G solvation = -3853.314536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.04337 -40.81778 -38.92270 -38.37395 -36.87852 -34.71339 -33.83914 -32.70404 -32.21952 -30.86062 -30.77832 -28.57580 -26.58559 -25.44022 -24.70072 -24.34426 -23.48632 -22.72962 -21.32666 -20.68844 -19.35355 -19.12330 -18.57583 -18.35999 -17.23096 -17.09715 -16.69863 -16.57954 -16.03760 -15.71138 -15.44471 -15.31204 -15.21130 -15.08250 -14.94674 -14.59847 -14.44452 -14.11270 -13.95634 -13.49432 -13.39276 -13.22054 -13.05714 -13.00260 -12.91022 -12.81801 -12.35364 -12.31049 -12.20417 -12.03055 -11.74108 -11.59054 -11.46298 -11.39568 -11.13388 -10.94882 -10.51204 -10.13368 -9.83320 -9.17499 -9.02492 -7.97999 -5.26952 -0.93919 -0.17852 0.61895 1.44989 1.47037 1.48350 1.55549 1.76330 2.04873 2.53726 2.96953 3.13590 3.34830 3.35423 3.46011 3.55157 3.59216 3.65803 3.75072 3.85350 3.88508 4.13187 4.20711 4.22893 4.25989 4.28948 4.42378 4.46473 4.52339 4.57402 4.60072 4.70493 4.73148 4.79099 4.87248 4.91066 4.98034 5.02942 5.07441 5.10751 5.24362 5.35255 5.36720 5.43171 5.44234 5.47081 5.48405 5.83130 6.25120 6.29917 6.78515 6.88941 7.31035 8.07183 8.30934 9.25356 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020964 B = 0.001997 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.279987 B =14019.879909 C =14958.495927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.271 1.271 6 H -0.291 1.291 7 C -0.249 4.249 8 H 0.071 0.929 9 N -0.747 5.747 10 C 0.148 3.852 11 C -0.099 4.099 12 C -0.084 4.084 13 H 0.087 0.913 14 C -0.117 4.117 15 C 0.094 3.906 16 N -0.610 5.610 17 C 0.577 3.423 18 O -0.577 6.577 19 C -0.193 4.193 20 C 0.125 3.875 21 N -0.515 5.515 22 C 0.187 3.813 23 C -0.133 4.133 24 C -0.069 4.069 25 C -0.124 4.124 26 C -0.083 4.083 27 C -0.145 4.145 28 C -0.010 4.010 29 C 0.109 3.891 30 H 0.252 0.748 31 H 0.376 0.624 32 H 0.017 0.983 33 H 0.013 0.987 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.171 0.829 41 H 0.211 0.789 42 H 0.180 0.820 43 H 0.164 0.836 44 H 0.145 0.855 45 H 0.110 0.890 46 H 0.058 0.942 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.622 -35.832 1.539 36.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.214 1.214 5 H -0.196 1.196 6 H -0.217 1.217 7 C -0.381 4.381 8 H 0.089 0.911 9 N -0.390 5.390 10 C 0.022 3.978 11 C -0.137 4.137 12 C -0.104 4.104 13 H 0.105 0.895 14 C -0.154 4.154 15 C -0.027 4.027 16 N -0.342 5.342 17 C 0.367 3.633 18 O -0.457 6.457 19 C -0.198 4.198 20 C -0.018 4.018 21 N -0.222 5.222 22 C 0.017 3.983 23 C -0.136 4.136 24 C -0.088 4.088 25 C -0.141 4.141 26 C -0.102 4.102 27 C -0.163 4.163 28 C -0.015 4.015 29 C -0.014 4.014 30 H 0.061 0.939 31 H 0.208 0.792 32 H 0.035 0.965 33 H 0.030 0.970 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.188 0.812 41 H 0.227 0.773 42 H 0.198 0.802 43 H 0.182 0.818 44 H 0.163 0.837 45 H 0.128 0.872 46 H 0.076 0.924 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.393 -35.677 2.008 36.706 hybrid contribution 0.905 2.352 0.074 2.521 sum 9.298 -33.326 2.082 34.661 Atomic orbital electron populations 1.69808 1.06484 1.26168 1.59333 1.25593 0.96519 1.01136 1.03587 0.85132 0.77704 0.79411 0.77474 1.21413 1.19577 1.21749 1.19623 0.91409 0.85598 1.41486 0.91081 1.42584 1.05727 1.01270 1.89425 1.20860 0.94450 0.85316 0.97222 1.21516 0.97512 0.91813 1.02860 1.22198 0.97669 0.94662 0.95871 0.89462 1.22743 0.97643 0.91888 1.03162 1.22441 0.89500 0.96671 0.94083 1.48523 1.32024 1.07883 1.45776 1.17911 0.80068 0.87137 0.78231 1.90779 1.37526 1.69290 1.48150 1.21723 0.95799 0.92243 1.10078 1.22963 0.96069 0.90263 0.92483 1.67263 1.33498 1.05952 1.15509 1.24031 0.85483 1.01795 0.87040 1.19277 0.97621 0.92007 1.04647 1.21514 0.90137 1.01631 0.95514 1.21394 0.99638 0.94129 0.98965 1.21448 0.98769 0.94799 0.95200 1.21041 0.92563 1.00471 1.02237 1.19096 0.92433 0.93337 0.96613 1.22373 1.00661 0.79697 0.98643 0.93878 0.79245 0.96486 0.96952 0.91607 0.90544 0.89079 0.87405 0.89155 0.90382 0.81229 0.77285 0.80250 0.81802 0.83687 0.87169 0.92375 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.10 13.06 21.65 0.28 -59.82 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 3 Si 0.97 47.32 29.55 68.60 2.03 49.35 16 4 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 5 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 7 C -0.25 -14.48 9.99 84.03 0.84 -13.64 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.75 -39.21 5.60 -343.46 -1.92 -41.13 16 10 C 0.15 6.04 6.14 86.38 0.53 6.57 16 11 C -0.10 -2.96 4.84 30.59 0.15 -2.81 16 12 C -0.08 -1.98 3.04 -9.40 -0.03 -2.01 16 13 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 14 C -0.12 -1.87 6.42 31.78 0.20 -1.67 16 15 C 0.09 1.58 5.92 86.73 0.51 2.10 16 16 N -0.61 -15.23 3.33 -815.52 -2.71 -17.94 16 17 C 0.58 16.96 7.07 86.67 0.61 17.57 16 18 O -0.58 -21.69 15.59 -4.06 -0.06 -21.75 16 19 C -0.19 -4.67 5.56 -18.60 -0.10 -4.77 16 20 C 0.13 2.46 9.64 84.81 0.82 3.28 16 21 N -0.51 -8.97 10.22 -193.72 -1.98 -10.95 16 22 C 0.19 2.29 11.00 85.31 0.94 3.23 16 23 C -0.13 -1.98 5.74 -21.34 -0.12 -2.11 16 24 C -0.07 -0.57 9.82 22.33 0.22 -0.35 16 25 C -0.12 -1.13 9.94 22.06 0.22 -0.91 16 26 C -0.08 -1.25 9.96 22.10 0.22 -1.03 16 27 C -0.14 -3.30 9.29 22.20 0.21 -3.10 16 28 C -0.01 -0.21 5.90 -19.94 -0.12 -0.33 16 29 C 0.11 3.00 5.74 86.85 0.50 3.50 16 30 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.38 20.54 7.67 -92.71 -0.71 19.83 16 32 H 0.02 0.70 8.14 -2.38 -0.02 0.69 16 33 H 0.01 0.53 7.59 -2.39 -0.02 0.51 16 34 H 0.07 1.99 8.03 -2.38 -0.02 1.97 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.09 1.36 8.04 -2.39 -0.02 1.34 16 37 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.18 5.77 -2.39 -0.01 1.17 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.17 2.77 6.13 -2.91 -0.02 2.75 16 41 H 0.21 0.55 8.06 -2.91 -0.02 0.53 16 42 H 0.18 -0.09 8.06 -2.91 -0.02 -0.11 16 43 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 44 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.11 3.10 6.41 -2.91 -0.02 3.08 16 46 H 0.06 1.88 7.95 -2.38 -0.02 1.87 16 47 H 0.07 1.98 7.96 -2.39 -0.02 1.96 16 Total: -1.00 -80.34 384.82 1.97 -78.36 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.28 Total: 24.38 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 6.06 Total: -0.51 kcal Atomic # 7 Polarization: -123.50 SS G_CDS: -6.33 Total: -129.84 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.06 Total: -21.75 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -80.34 1.97 -78.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326440080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.817 kcal (2) G-P(sol) polarization free energy of solvation -80.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds